##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139166_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7009467 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.631626627245694 18.0 18.0 30.0 18.0 33.0 2 30.256415216734737 31.0 29.0 33.0 27.0 33.0 3 31.507895678801255 33.0 31.0 33.0 29.0 33.0 4 32.50099444080413 33.0 33.0 33.0 31.0 34.0 5 32.92989053233291 33.0 33.0 34.0 32.0 34.0 6 36.90320690574619 38.0 37.0 38.0 35.0 38.0 7 36.994989062649125 38.0 38.0 38.0 35.0 38.0 8 36.97596778756502 38.0 38.0 38.0 35.0 38.0 9 37.22033857923862 38.0 38.0 38.0 36.0 38.0 10-11 37.258587564503834 38.0 38.0 38.0 36.0 38.0 12-13 37.31354316954484 38.0 38.0 38.0 37.0 38.0 14-15 37.222964813159116 38.0 38.0 38.0 36.0 38.0 16-17 37.29868397982329 38.0 38.0 38.0 36.5 38.0 18-19 37.350874610009576 38.0 38.0 38.0 37.0 38.0 20-21 37.37179035758493 38.0 38.0 38.0 37.0 38.0 22-23 37.39702544446331 38.0 38.0 38.0 37.0 38.0 24-25 37.40726433787658 38.0 38.0 38.0 37.0 38.0 26-27 37.3774375325485 38.0 38.0 38.0 37.0 38.0 28-29 37.355967266976805 38.0 38.0 38.0 37.0 38.0 30-31 37.353290780492806 38.0 38.0 38.0 37.0 38.0 32-33 37.33391649645846 38.0 38.0 38.0 37.0 38.0 34-35 37.31239645911599 38.0 38.0 38.0 37.0 38.0 36-37 37.28865805802343 38.0 38.0 38.0 37.0 38.0 38-39 37.283239013672286 38.0 38.0 38.0 37.0 38.0 40-41 37.265128008218326 38.0 38.0 38.0 37.0 38.0 42-43 37.225423184199414 38.0 38.0 38.0 37.0 38.0 44-45 37.133277750435255 38.0 38.0 38.0 36.0 38.0 46-47 37.14056085790414 38.0 38.0 38.0 36.0 38.0 48-49 37.08849463078014 38.0 38.0 38.0 36.0 38.0 50-51 37.026619938167904 38.0 38.0 38.0 36.0 38.0 52-53 36.99437547028185 38.0 38.0 38.0 36.0 38.0 54-55 36.956725091028154 38.0 38.0 38.0 36.0 38.0 56-57 36.90346845199734 38.0 38.0 38.0 36.0 38.0 58-59 36.88483848237896 38.0 38.0 38.0 36.0 38.0 60-61 36.89225063802008 38.0 38.0 38.0 36.0 38.0 62-63 36.89549845530814 38.0 38.0 38.0 35.0 38.0 64-65 36.85235017416292 38.0 38.0 38.0 35.0 38.0 66-67 36.87949312446248 38.0 38.0 38.0 35.0 38.0 68-69 36.86185941675998 38.0 38.0 38.0 35.0 38.0 70-71 36.86759389863229 38.0 38.0 38.0 35.0 38.0 72-73 36.85051777787304 38.0 38.0 38.0 35.0 38.0 74-75 36.83906307109332 38.0 38.0 38.0 35.0 38.0 76-77 36.821128221824225 38.0 38.0 38.0 35.0 38.0 78-79 36.7964743808006 38.0 38.0 38.0 35.0 38.0 80-81 36.75873309620245 38.0 38.0 38.0 35.0 38.0 82-83 36.71714339933503 38.0 38.0 38.0 34.5 38.0 84-85 36.69099224873542 38.0 38.0 38.0 34.0 38.0 86-87 36.681603173883346 38.0 38.0 38.0 34.0 38.0 88-89 36.659994209710035 38.0 38.0 38.0 34.0 38.0 90-91 36.63605865390298 38.0 38.0 38.0 34.0 38.0 92-93 36.603605268578164 38.0 38.0 38.0 34.0 38.0 94-95 36.56988725511742 38.0 38.0 38.0 34.0 38.0 96-97 36.56494229180534 38.0 38.0 38.0 34.0 38.0 98-99 36.57397942471347 38.0 38.0 38.0 34.0 38.0 100 35.04662995581544 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 5.0 18 4.0 19 12.0 20 29.0 21 103.0 22 447.0 23 1330.0 24 3301.0 25 6946.0 26 12682.0 27 21085.0 28 33535.0 29 48447.0 30 64700.0 31 83166.0 32 108350.0 33 148338.0 34 223795.0 35 408477.0 36 1310786.0 37 4533929.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.86093364873535 18.0778224649606 15.600187574889787 23.461056311414264 2 14.875542330644679 21.26274247856179 41.5226360404438 22.33907915034973 3 18.343483132634283 26.52825503821048 30.883376366427967 24.24488546272727 4 12.650862041293582 17.54116254488394 38.913600706016595 30.894374707805888 5 13.393472000082173 37.49892823519963 35.331117187654925 13.776482577063279 6 29.660657627428154 37.64857106987149 19.09833025177475 13.592441050925608 7 26.470614670131127 32.57995222746608 23.704184640572528 17.245248461830265 8 24.547158863862258 36.49588477982705 21.527628277585155 17.42932807872553 9 26.56383145822642 16.225484762250826 21.148854827335658 36.06182895218709 10-11 24.6215297111749 26.32141645006675 28.97678953335539 20.080264305402963 12-13 25.504086116676206 24.1507521185277 29.029539621200872 21.315622143595224 14-15 22.781981853969782 25.104283963388376 26.78570282162681 25.32803136101504 16-17 22.026539250416615 28.05777529161632 27.446109668538277 22.469575789428784 18-19 22.090374346580134 27.175661145134143 29.304139672816774 21.429824835468946 20-21 23.16281348441756 26.37051539298165 29.009229704284095 21.4574414183167 22-23 22.87874281857281 26.238877111805238 28.889509190108143 21.992870879513813 24-25 22.45612255322452 26.447790232930572 29.027202533112117 22.06888468073279 26-27 22.28162082529944 26.553261419980593 29.083317023551803 22.081800731168162 28-29 22.320551291877088 26.506605804765236 29.112973334158493 22.059869569199183 30-31 22.604841836938157 26.452478899704396 28.87300429988784 22.069674963469605 32-33 22.31166318662017 26.699595455789844 28.856362122774147 22.132379234815836 34-35 22.492644832752422 26.63570351854871 28.868884099009623 22.00276754968925 36-37 22.480663202455734 26.49074286765695 28.839342987572504 22.189250942314814 38-39 22.276899070134053 26.7660472407966 28.956409443505628 22.000644245563723 40-41 22.56509781433602 26.548952304858968 28.834378979241887 22.051570901563128 42-43 22.42251950535959 26.666383578942703 28.549022793485047 22.362074122212665 44-45 22.466903650846223 26.78949240290212 28.446404141698018 22.29719980455364 46-47 22.603538286689606 26.73074839749216 28.183955530115455 22.48175778570278 48-49 22.52128356054631 26.85771907603694 28.12440749975672 22.49658986366003 50-51 22.46494978308227 27.01574856637664 27.981167665368563 22.538133985172525 52-53 22.713697688260236 26.862057553888697 27.84723819569887 22.577006562152192 54-55 22.715608819425327 26.77878867036186 27.868296853343903 22.637305656868914 56-57 22.60559398055544 26.957853238416895 27.89015695740146 22.546395823626206 58-59 22.603387861861915 26.906307893189197 27.91761686249415 22.57268738245474 60-61 22.6338118878239 26.959854312722985 27.9620724417526 22.444261357700515 62-63 22.595753572699582 26.9481130073364 28.007320075355636 22.448813344608382 64-65 22.598888180324877 26.860148898500913 28.02359213035987 22.51737079081434 66-67 22.669907818623123 26.96570440520715 27.814889108508655 22.54949866766107 68-69 22.57774159050112 26.99178403508291 27.948590629792207 22.48188374462376 70-71 22.619852484125204 26.534492506627828 28.04488634611588 22.800768663131084 72-73 22.695628897767605 26.622852931584656 27.98803344493403 22.693484725713706 74-75 22.470755245447467 26.949447721989838 27.891644133481336 22.688152899081352 76-77 22.64488248156745 26.80796924981166 27.765271910814192 22.7818763578067 78-79 22.628011407339375 26.8252898642776 27.64255187707422 22.904146851308806 80-81 22.64750985747039 26.919186261938666 27.53967269876017 22.893631181830777 82-83 22.76085768124011 26.82874030344854 27.611787606262094 22.79861440904925 84-85 22.791463347972932 26.83070167915377 27.549318664122968 22.828516308750338 86-87 22.60167680523108 26.96915941732842 27.63792671675172 22.791237060688783 88-89 22.725492886378266 26.939328049258705 27.540749350948317 22.794429713414715 90-91 22.781387591372653 26.930164505860482 27.53523863731513 22.753209265451737 92-93 22.81787382870194 26.940503301292363 27.50894684984097 22.732676020164725 94-95 22.661861833147572 26.91966744655569 27.54430576430618 22.874164955990555 96-97 22.766353353454626 27.0242970544932 27.644344466003535 22.565005126048636 98-99 23.852072250542335 29.009053056398532 27.74002475889684 19.39884993416229 100 30.81574809294586 40.06848118844222 29.115770718611923 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2293.0 1 2110.5 2 2617.0 3 3489.0 4 4195.5 5 5891.5 6 7667.0 7 9776.0 8 11926.0 9 12425.5 10 11510.0 11 10563.5 12 11109.5 13 13581.5 14 18865.0 15 25285.5 16 29729.0 17 31753.5 18 31096.5 19 28027.5 20 24440.5 21 21747.0 22 21289.0 23 23866.5 24 29303.5 25 38144.0 26 50999.5 27 65067.0 28 77368.0 29 91513.0 30 105740.0 31 118718.0 32 136109.5 33 156383.0 34 174972.5 35 193711.0 36 215156.0 37 231084.0 38 240842.0 39 248571.0 40 257482.0 41 265062.0 42 269438.0 43 276107.0 44 283574.5 45 289967.5 46 293167.5 47 294726.0 48 296304.5 49 297707.0 50 297686.5 51 295214.0 52 288903.5 53 278601.5 54 264068.5 55 247457.5 56 228022.0 57 205318.0 58 182956.0 59 159430.0 60 135458.0 61 110657.0 62 87077.0 63 67201.0 64 50409.5 65 37333.0 66 27207.5 67 20202.5 68 15132.5 69 10812.0 70 7597.0 71 5075.5 72 3245.5 73 2063.5 74 1365.5 75 885.0 76 571.0 77 355.0 78 217.0 79 138.5 80 95.0 81 65.5 82 47.5 83 33.5 84 18.5 85 10.0 86 7.0 87 6.0 88 3.5 89 0.5 90 0.5 91 1.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.001940233116155622 3 0.0018974338562404245 4 0.0 5 0.0 6 3.85193339236778E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 1.4980418453022123E-4 24-25 0.0010772345036071304 26-27 0.002647073471200911 28-29 0.0015988984731590272 30-31 0.0023655041178709977 32-33 0.0032670267799474765 34-35 0.0010134545798767163 36-37 0.0 38-39 5.089973646297877E-5 40-41 0.0 42-43 5.612490331377676E-4 44-45 0.0 46-47 0.0 48-49 1.4467454889143127E-4 50-51 0.005946391701821919 52-53 0.0 54-55 0.003015485497081245 56-57 0.04747364749927046 58-59 0.05961451199876888 60-61 0.037815003542834534 62-63 0.008414766535934442 64-65 0.0 66-67 0.0 68-69 5.906178664435819E-4 70-71 0.0025112380036067866 72-73 0.01005411847555358 74-75 0.004704333513112324 76-77 0.003945805860512578 78-79 0.003574296134645079 80-81 0.016463471966537222 82-83 0.05641005318176147 84-85 0.03559690489380179 86-87 0.009037980061405488 88-89 0.007809684294944471 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 52.0 20-21 177.0 22-23 419.0 24-25 760.0 26-27 2099.0 28-29 5559.0 30-31 16815.0 32-33 20945.0 34-35 28176.0 36-37 45175.0 38-39 52707.0 40-41 52190.0 42-43 58651.0 44-45 70375.0 46-47 71797.0 48-49 67912.0 50-51 60965.0 52-53 56125.0 54-55 60729.0 56-57 63515.0 58-59 66487.0 60-61 66254.0 62-63 62316.0 64-65 65878.0 66-67 69548.0 68-69 71986.0 70-71 71394.0 72-73 66184.0 74-75 65604.0 76-77 69210.0 78-79 72120.0 80-81 72355.0 82-83 67384.0 84-85 65523.0 86-87 67462.0 88-89 71203.0 90-91 72703.0 92-93 72000.0 94-95 79530.0 96-97 216829.0 98-99 1564547.0 100-101 3177807.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.87027344574433 #Duplication Level Percentage of deduplicated Percentage of total 1 90.21250698355043 76.56360135920045 2 6.699146028788723 11.371167106325423 3 1.6779869003312509 4.272336212084706 4 0.6242108040730798 2.1190776651788092 5 0.2929985657120702 1.2433434195597148 6 0.1493727138746842 0.7606381843126426 7 0.09290432809105152 0.5519371010566483 8 0.060244904327175046 0.4090401203168042 9 0.040793195944827 0.31159167251069675 >10 0.1450396327489383 1.9438915141073032 >50 0.0035768657783673157 0.20391151467895724 >100 0.0011328470093006763 0.17223120521567256 >500 2.8743256704007737E-5 0.022247766272456095 >1k 5.748651340088575E-5 0.0549851591797112 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.4266419971732516E-5 0.0 0.0 0.0 3 0.0 2.853283994346503E-5 0.0 0.0 0.0 4 0.0 1.5693061968905767E-4 0.0 0.0 0.0 5 0.0 1.5693061968905767E-4 0.0 1.4266419971732516E-5 0.0 6 0.0 1.711970396607902E-4 0.0 1.4266419971732516E-5 0.0 7 0.0 1.711970396607902E-4 0.0 1.4266419971732516E-5 0.0 8 0.0 1.854634596325227E-4 0.0 1.4266419971732516E-5 0.0 9 0.0 4.565254390954405E-4 0.0 1.4266419971732516E-5 1.4266419971732516E-5 10-11 0.0 4.565254390954405E-4 0.0 2.853283994346503E-5 4.279925991519754E-5 12-13 0.0 4.70791859067173E-4 0.0 2.853283994346503E-5 7.846530984452883E-5 14-15 0.0 6.91921368629027E-4 0.0 2.853283994346503E-5 1.1413135977386013E-4 16-17 0.0 7.061877886007595E-4 0.0 2.853283994346503E-5 1.2839777974559265E-4 18-19 0.0 7.703866784735558E-4 0.0 2.853283994346503E-5 1.2839777974559265E-4 20-21 0.0 8.345855683463522E-4 0.0 2.853283994346503E-5 1.2839777974559265E-4 22-23 0.0 0.0010414486579364735 0.0 2.853283994346503E-5 1.4266419971732517E-4 24-25 0.0 0.0012126456975972639 0.0 8.55985198303951E-5 1.5693061968905767E-4 26-27 0.0 0.0012697113774841938 0.0 1.5693061968905767E-4 1.5693061968905767E-4 28-29 0.0 0.0012697113774841938 0.0 6.847881586431608E-4 1.6406382967492391E-4 30-31 0.0 0.0014837076770601817 0.0 0.0021970286756468073 1.711970396607902E-4 32-33 0.0 0.0014837076770601817 0.0 0.005678035148749542 2.0686308959012146E-4 34-35 0.0 0.001747636446537233 0.0 0.009743964840693307 2.2826271954772025E-4 36-37 0.0 0.002018698426000151 0.0 0.016648912107011846 2.353959295335865E-4 38-39 0.0 0.0020543644759294824 0.0 0.03458180201147962 2.4252913951945278E-4 40-41 0.0 0.0022041618856326736 0.0 0.05437645972225848 2.4252913951945278E-4 42-43 0.0 0.0022612275655196036 0.0 0.06683817756756683 2.4252913951945278E-4 44-45 0.0 0.0023967585552510627 0.0 0.08085493518979403 2.4252913951945278E-4 46-47 0.0 0.0024823570750814577 0.0 0.09613427097951956 2.4252913951945278E-4 48-49 0.0 0.002489490285067324 0.0 0.11129947540947122 2.567955594911853E-4 50-51 0.0 0.0027177530046150443 0.0 0.12731353182774097 2.710619794629178E-4 52-53 0.0 0.002739152634572643 0.0 0.1651694772227332 2.710619794629178E-4 54-55 0.0 0.002767685474516108 0.0 0.2094025123450899 2.7819518944878404E-4 56-57 0.0 0.0028104847344313055 0.0 0.26763090545971613 2.853283994346503E-4 58-59 0.0 0.0028176179444171718 0.0 0.3123275992311541 2.853283994346503E-4 60-61 0.0 0.0028604172043323692 0.0 0.32705767785196793 2.853283994346503E-4 62-63 0.0 0.0029460157241627642 0.0 0.3443771116976512 2.853283994346503E-4 64-65 1.4266419971732516E-5 0.0032955430134702112 0.0 0.35368595072920667 2.924616094205166E-4 66-67 1.4266419971732516E-5 0.0033240758534136762 0.0 0.36142548356387155 2.9959481940638284E-4 68-69 1.4266419971732516E-5 0.00343107400320167 0.0 0.3689153540490311 2.9959481940638284E-4 70-71 1.4266419971732516E-5 0.0035024061030603324 0.0 0.3751925788365934 3.1386123937811533E-4 72-73 1.4266419971732516E-5 0.003523805733017931 0.0 0.3800859608868977 3.709269192650454E-4 74-75 1.4266419971732516E-5 0.0036379370927917916 0.0 0.38397356032919483 3.7806012925091167E-4 76-77 1.4266419971732516E-5 0.0037520684525656515 0.0 0.3876614298918877 3.851933392367779E-4 78-79 1.4266419971732516E-5 0.003823400552424314 0.0 0.39005105523715283 4.1372617918024297E-4 80-81 1.4266419971732516E-5 0.0038305337624101802 0.0 0.3908357083355981 4.1372617918024297E-4 82-83 1.4266419971732516E-5 0.0038590666023536457 0.0 0.3915989618040858 4.208593891661092E-4 84-85 1.4266419971732516E-5 0.003894732652282977 0.0 0.3919199562534498 4.2799259915197546E-4 86-87 1.4266419971732516E-5 0.003958931542155772 0.0 0.3920840200831247 4.2799259915197546E-4 88 1.4266419971732516E-5 0.004237126731604557 0.0 0.3921125529230682 4.2799259915197546E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9560 0.0 54.361523 1 GTATCAA 18195 0.0 39.330948 1 TCAACGC 23010 0.0 30.645256 4 ATCAACG 23370 0.0 30.191492 3 CAACGCA 23475 0.0 30.020432 5 TATCAAC 23930 0.0 29.852627 2 AACGCAG 24150 0.0 29.198648 6 ACGCAGA 27895 0.0 25.338531 7 CGCAGAG 28620 0.0 24.623678 8 GTACATG 27615 0.0 23.327515 1 TACATGG 27560 0.0 23.0709 2 ACATGGG 27250 0.0 22.612011 3 GTGGTAT 4065 0.0 22.403975 1 GCAGAGT 32760 0.0 21.550148 9 CATGGGG 19120 0.0 20.537493 4 TGGTATC 4100 0.0 20.072964 2 GAGTACT 18285 0.0 19.293549 12-13 CAGAGTA 31935 0.0 19.163647 10-11 AGAGTAC 30115 0.0 18.879162 10-11 GTACTTT 20050 0.0 17.49109 14-15 >>END_MODULE