##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139161_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7531452 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.694538450221817 18.0 18.0 31.0 18.0 33.0 2 30.68045657065862 31.0 29.0 33.0 27.0 33.0 3 31.775425774472172 33.0 31.0 33.0 29.0 33.0 4 32.60724452602234 33.0 33.0 33.0 31.0 34.0 5 33.00250164244557 33.0 33.0 34.0 32.0 34.0 6 36.990392025335886 38.0 38.0 38.0 35.0 38.0 7 37.10072267605237 38.0 38.0 38.0 36.0 38.0 8 37.082477323097855 38.0 38.0 38.0 36.0 38.0 9 37.28809955902262 38.0 38.0 38.0 36.0 38.0 10-11 37.31263878465931 38.0 38.0 38.0 37.0 38.0 12-13 37.367661508033244 38.0 38.0 38.0 37.0 38.0 14-15 37.27288781764791 38.0 38.0 38.0 36.5 38.0 16-17 37.345347816065214 38.0 38.0 38.0 37.0 38.0 18-19 37.37877742565444 38.0 38.0 38.0 37.0 38.0 20-21 37.39584057722546 38.0 38.0 38.0 37.0 38.0 22-23 37.41394816978537 38.0 38.0 38.0 37.0 38.0 24-25 37.425752798597 38.0 38.0 38.0 37.0 38.0 26-27 37.39344836685184 38.0 38.0 38.0 37.0 38.0 28-29 37.37099279719098 38.0 38.0 38.0 37.0 38.0 30-31 37.3702046751003 38.0 38.0 38.0 37.0 38.0 32-33 37.35591818868918 38.0 38.0 38.0 37.0 38.0 34-35 37.32880533059165 38.0 38.0 38.0 37.0 38.0 36-37 37.30570565512407 38.0 38.0 38.0 37.0 38.0 38-39 37.3037653636991 38.0 38.0 38.0 37.0 38.0 40-41 37.29431862692671 38.0 38.0 38.0 37.0 38.0 42-43 37.25780647201844 38.0 38.0 38.0 37.0 38.0 44-45 37.17095678078374 38.0 38.0 38.0 37.0 38.0 46-47 37.18852845213799 38.0 38.0 38.0 37.0 38.0 48-49 37.143580545176604 38.0 38.0 38.0 36.5 38.0 50-51 37.09399734116616 38.0 38.0 38.0 36.0 38.0 52-53 37.069515419690376 38.0 38.0 38.0 36.0 38.0 54-55 37.04292042475187 38.0 38.0 38.0 36.0 38.0 56-57 36.99789125100439 38.0 38.0 38.0 36.0 38.0 58-59 36.98613967270467 38.0 38.0 38.0 36.0 38.0 60-61 36.99451556557125 38.0 38.0 38.0 36.0 38.0 62-63 36.998696936032445 38.0 38.0 38.0 36.0 38.0 64-65 36.959424525388116 38.0 38.0 38.0 36.0 38.0 66-67 36.98551742560625 38.0 38.0 38.0 36.0 38.0 68-69 36.971806737668594 38.0 38.0 38.0 36.0 38.0 70-71 36.977678983514906 38.0 38.0 38.0 36.0 38.0 72-73 36.96138225589701 38.0 38.0 38.0 36.0 38.0 74-75 36.954266000597656 38.0 38.0 38.0 36.0 38.0 76-77 36.94058504810045 38.0 38.0 38.0 36.0 38.0 78-79 36.91932455442587 38.0 38.0 38.0 35.5 38.0 80-81 36.88511237849073 38.0 38.0 38.0 35.0 38.0 82-83 36.849695140291004 38.0 38.0 38.0 35.0 38.0 84-85 36.828185158399684 38.0 38.0 38.0 35.0 38.0 86-87 36.819613640801144 38.0 38.0 38.0 35.0 38.0 88-89 36.802283204995696 38.0 38.0 38.0 35.0 38.0 90-91 36.777353368847116 38.0 38.0 38.0 35.0 38.0 92-93 36.750975482834676 38.0 38.0 38.0 35.0 38.0 94-95 36.72195171843561 38.0 38.0 38.0 34.5 38.0 96-97 36.72238362284263 38.0 38.0 38.0 34.0 38.0 98-99 36.72873961804649 38.0 38.0 38.0 34.0 38.0 100 35.286817082565435 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 4.0 18 1.0 19 13.0 20 28.0 21 102.0 22 457.0 23 1469.0 24 3346.0 25 7295.0 26 13049.0 27 21746.0 28 33613.0 29 49320.0 30 66141.0 31 85785.0 32 111433.0 33 150099.0 34 221959.0 35 391858.0 36 1206944.0 37 5166790.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.21863194507513 19.009986387750992 15.159161872106466 23.612219795067404 2 14.446398219481418 21.397240233378376 42.132800905661696 22.023560641478504 3 18.07030306957345 26.74132126070548 31.076916662672225 24.111459007048843 4 12.267953111830229 17.96066681431416 39.70851835741634 30.062861716439272 5 13.096863659225338 37.656204938967946 35.92097513201969 13.32595626978702 6 29.089740653329216 38.327620603006736 19.44160633611833 13.141032407545715 7 25.799221717140338 32.811627824223 24.242324056503314 17.146826402133346 8 23.799726799028925 37.17018975889377 21.868253292990513 17.16183014908679 9 25.897914505728775 16.58159674920586 21.784046422920838 35.736442322144526 10-11 23.93341947874062 26.780785431547592 29.555847929456363 19.72994716025542 12-13 24.84089389403265 24.52990472487908 29.550304509674895 21.078896871413374 14-15 22.109328984636694 25.660609667299216 27.242402925757208 24.98765842230688 16-17 21.48765603232949 28.62392271769109 27.93679757900601 21.951623670973405 18-19 21.494002750067317 27.86151329119538 29.653398839958083 20.99108511877922 20-21 22.45021510346948 27.06696140698336 29.451293458943855 21.031530030603307 22-23 22.138102698539093 26.993098928198073 29.2726249341236 21.596173439139232 24-25 21.797318121196255 27.141409440761016 29.396472696559467 21.66479974148326 26-27 21.728808467648488 27.25065842238133 29.382152719462727 21.638380390507457 28-29 21.748430964184408 27.222797140672483 29.394926064025924 21.633845831117192 30-31 21.95400598158311 27.169381210381154 29.293445029450737 21.583167778585004 32-33 21.75131433720614 27.332262046313726 29.24864167382043 21.667781942659705 34-35 21.91762317158523 27.266972301745763 29.267175630685667 21.548228895983346 36-37 21.902562611297636 27.181433674663985 29.210856795788036 21.705146918250342 38-39 21.725387673486207 27.408324635801407 29.28971394408585 21.57657374662654 40-41 21.988742379877817 27.218630236274798 29.146195339584153 21.646432044263232 42-43 21.838895289657557 27.31880259529423 28.986173723231584 21.856128391816632 44-45 21.94213387075597 27.42139423822392 28.838455288871 21.798016602149104 46-47 22.02124168124116 27.420817578491295 28.56964422429548 21.98829651597206 48-49 21.938435679406982 27.48746324706038 28.57514957315362 21.998951500379015 50-51 21.979864305119676 27.62604744154095 28.43811023839171 21.955978014947657 52-53 22.14222538049938 27.55864522713725 28.32863772113295 21.97049167123042 54-55 22.074934285604844 27.480535023947724 28.385532642546213 22.058998047901223 56-57 22.055624840041386 27.635579773217998 28.332300573249352 21.976494813491264 58-59 22.056259735247696 27.586031525894978 28.353448944939245 22.004259793918077 60-61 22.103394582935152 27.59363686029005 28.39061819636125 21.912350360413548 62-63 22.068839689234558 27.575498047350326 28.47359220838999 21.88207005502512 64-65 22.051841742938603 27.4806861619875 28.44280160143583 22.02467049363807 66-67 22.080512687317338 27.501536028207784 28.382386182300667 22.035565102174207 68-69 22.059574713113385 27.549334467629826 28.432624521855637 21.95846629740115 70-71 22.046139956888375 27.266036792009263 28.425679089484486 22.26214416161788 72-73 22.13628178560767 27.301400751666073 28.43674867118126 22.125568791544996 74-75 22.031477021774105 27.53071058127567 28.343469267434774 22.094343129515455 76-77 22.142150406171027 27.438339099764512 28.222370133296103 22.197140360768362 78-79 22.073397311329035 27.451548255946413 28.193569011803753 22.2814854209208 80-81 22.11639695323125 27.55317807289106 28.095620673072748 22.234804300804946 82-83 22.202068238945202 27.520060960242677 28.133463358191896 22.144407442620224 84-85 22.22129890843437 27.498037206010356 28.080909592329505 22.19975429322577 86-87 22.109084519621053 27.554242679530883 28.13990416168507 22.196768639162993 88-89 22.250440666758127 27.533776517362895 28.041656586761693 22.174126229117284 90-91 22.28139519170596 27.579418825236125 28.047125793018328 22.092060190039586 92-93 22.261381548117747 27.579974368441235 28.02618359580239 22.13246048763863 94-95 22.15379522738568 27.610578607024934 28.028761334042006 22.206864831547385 96-97 22.303179673551675 27.689570655748035 28.069746131626026 21.93750353907426 98-99 23.32659778440457 29.60740396399442 28.3231927313474 18.742805520253608 100 29.685474054207152 40.579109403656524 29.735416542136324 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1385.0 1 1347.0 2 1942.5 3 2808.0 4 3636.0 5 5287.5 6 6791.5 7 8420.0 8 9970.5 9 10329.0 10 9767.0 11 9263.5 12 10240.0 13 12891.5 14 18051.0 15 24282.0 16 28775.5 17 31072.0 18 31039.0 19 29110.5 20 26892.0 21 25631.5 22 26521.5 23 31090.5 24 39203.5 25 50140.5 26 64504.0 27 81029.0 28 97413.5 29 115049.5 30 133144.0 31 150533.5 32 169615.0 33 190584.0 34 209580.0 35 227055.5 36 246709.5 37 263518.5 38 276706.5 39 287175.0 40 296878.5 41 305384.0 42 309125.0 43 313321.5 44 318607.5 45 322185.5 46 321998.5 47 320397.0 48 317721.0 49 312185.5 50 305278.5 51 296195.0 52 283272.5 53 267211.5 54 247655.5 55 226290.5 56 204188.0 57 181471.0 58 159331.0 59 135507.5 60 112067.5 61 90682.0 62 71608.0 63 54875.0 64 40482.0 65 29967.5 66 22351.0 67 16907.5 68 12834.0 69 9394.5 70 6904.0 71 4834.5 72 3279.0 73 2260.0 74 1511.0 75 992.0 76 643.0 77 392.5 78 237.5 79 159.5 80 113.5 81 79.0 82 53.5 83 38.0 84 22.0 85 11.0 86 5.5 87 3.0 88 1.5 89 1.5 90 2.0 91 1.0 92 0.0 93 0.0 94 0.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0021642573039036828 3 0.0019252595648222945 4 0.0 5 0.0 6 3.5849660862208245E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 1.8589426360842278E-4 24-25 0.0011486255002828409 26-27 0.002443583435425984 28-29 0.0014547118315499496 30-31 0.002619991103999749 32-33 0.0035189940369046505 34-35 9.691785189401545E-4 36-37 0.0 38-39 4.728752986629721E-5 40-41 6.801858131604391E-6 42-43 5.68497356007839E-4 44-45 0.0 46-47 0.0 48-49 2.74623055211064E-4 50-51 0.0064100126956626174 52-53 0.0 54-55 0.0026379017334627955 56-57 0.04657473972853747 58-59 0.05817216958546528 60-61 0.03798454566101701 62-63 0.008742443119291688 64-65 0.0 66-67 0.0 68-69 6.346323845475993E-4 70-71 0.0029268217861344713 72-73 0.009857514610442653 74-75 0.004676367397805385 76-77 0.003635700837083761 78-79 0.003922336431216437 80-81 0.016429441625540695 82-83 0.05389871859414608 84-85 0.0350717388781307 86-87 0.009101210940066131 88-89 0.008282507413579781 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 43.0 20-21 164.0 22-23 402.0 24-25 621.0 26-27 1928.0 28-29 5253.0 30-31 16387.0 32-33 19954.0 34-35 27854.0 36-37 44473.0 38-39 51142.0 40-41 49962.0 42-43 57259.0 44-45 68836.0 46-47 69702.0 48-49 66273.0 50-51 59889.0 52-53 57812.0 54-55 62392.0 56-57 66597.0 58-59 66852.0 60-61 65158.0 62-63 61663.0 64-65 64109.0 66-67 68665.0 68-69 71097.0 70-71 70385.0 72-73 65625.0 74-75 65355.0 76-77 68819.0 78-79 71858.0 80-81 71019.0 82-83 66954.0 84-85 65148.0 86-87 67075.0 88-89 71047.0 90-91 72211.0 92-93 71196.0 94-95 80436.0 96-97 229591.0 98-99 1690128.0 100-101 3580118.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.82137933101332 #Duplication Level Percentage of deduplicated Percentage of total 1 90.9103296013231 78.92960211423922 2 6.374778967792789 11.069342058282066 3 1.5444274096174808 4.022679539388408 4 0.5686326497989627 1.9747788395277994 5 0.23342783717768037 1.01332633990107 6 0.1291080530680896 0.6725603550067922 7 0.07445351959171331 0.4524910086900822 8 0.04401597077813081 0.30572218364407144 9 0.03015070756578399 0.23559534168006466 >10 0.08882046657931103 1.1500185095626665 >50 0.0014718106735024676 0.08529635651415332 >100 3.1409555354257204E-4 0.050835329532871266 >500 6.89104798381582E-5 0.03775202403077627 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.983295651356472E-5 0.0 0.0 0.0 3 0.0 3.983295651356472E-5 0.0 0.0 0.0 4 0.0 1.1949886954069414E-4 0.0 0.0 0.0 5 0.0 1.1949886954069414E-4 0.0 0.0 0.0 6 1.3277652171188239E-5 1.1949886954069414E-4 0.0 0.0 0.0 7 2.6555304342376478E-5 1.3277652171188239E-4 0.0 0.0 0.0 8 5.3110608684752955E-5 1.4605417388307063E-4 0.0 0.0 0.0 9 5.3110608684752955E-5 2.6555304342376477E-4 0.0 1.3277652171188239E-5 0.0 10-11 5.974943477034707E-5 2.6555304342376477E-4 0.0 3.3194130427970596E-5 0.0 12-13 6.638826085594119E-5 2.721918695093589E-4 0.0 4.647178259915884E-5 0.0 14-15 6.638826085594119E-5 3.3858013036530004E-4 0.0 6.638826085594119E-5 3.3194130427970596E-5 16-17 7.966591302712944E-5 3.452189564508942E-4 0.0 6.638826085594119E-5 3.983295651356472E-5 18-19 7.966591302712944E-5 3.6513543470767653E-4 0.0 9.294356519831767E-5 3.983295651356472E-5 20-21 7.966591302712944E-5 3.850519129644589E-4 0.0 1.0622121736950591E-4 5.3110608684752955E-5 22-23 7.966591302712944E-5 4.44801347734806E-4 0.0 1.1286004345510003E-4 5.974943477034707E-5 24-25 7.966591302712944E-5 4.514401738204001E-4 0.0 1.3277652171188239E-4 6.638826085594119E-5 26-27 7.966591302712944E-5 4.514401738204001E-4 0.0 1.9916478256782358E-4 6.638826085594119E-5 28-29 9.294356519831767E-5 4.514401738204001E-4 0.0 4.3816252164921186E-4 7.966591302712944E-5 30-31 9.294356519831767E-5 5.311060868475295E-4 0.0 0.0015402076518578358 7.966591302712944E-5 32-33 9.294356519831767E-5 5.311060868475295E-4 0.0 0.004149266303496324 9.294356519831767E-5 34-35 1.1949886954069414E-4 5.974943477034707E-4 0.0 0.007362458128923878 9.294356519831767E-5 36-37 1.1949886954069414E-4 6.572437824738178E-4 0.0 0.011783916301929563 9.294356519831767E-5 38-39 1.1949886954069414E-4 7.169932172441649E-4 0.0 0.018801155474402545 9.294356519831767E-5 40-41 1.4605417388307063E-4 7.701038259289178E-4 0.0 0.02620344655983999 1.3277652171188239E-4 42-43 1.5933182605425887E-4 7.701038259289178E-4 0.0 0.033778347123502875 1.3277652171188239E-4 44-45 1.6597065213985298E-4 8.298532606992649E-4 0.0 0.04240218220868964 1.4605417388307063E-4 46-47 1.9916478256782358E-4 8.763250432984237E-4 0.0 0.052499836684878294 1.4605417388307063E-4 48-49 2.058036086534177E-4 8.89602695469612E-4 0.0 0.0619734415090211 1.5933182605425887E-4 50-51 2.1244243473901182E-4 9.759074345823355E-4 0.0 0.07122132624625371 1.5933182605425887E-4 52-53 2.1244243473901182E-4 9.825462606679297E-4 0.0 0.08022357441831934 1.7924830431104123E-4 54-55 2.1244243473901182E-4 9.891850867535237E-4 0.0 0.08935859911209684 1.9916478256782358E-4 56-57 2.1244243473901182E-4 9.95823912839118E-4 0.0 0.09849362380587434 1.9916478256782358E-4 58-59 2.2572008691020004E-4 0.0010024627389247122 0.0 0.10738301193448488 1.9916478256782358E-4 60-61 2.3235891299579415E-4 0.0010356568693526825 0.0 0.11572801632407669 1.9916478256782358E-4 62-63 2.3899773908138828E-4 0.0010754898258662474 0.0 0.1238539394528439 2.1244243473901182E-4 64-65 2.3899773908138828E-4 0.0011551557388933768 0.0 0.13112345401656944 2.1908126082460593E-4 66-67 2.3899773908138828E-4 0.0011551557388933768 0.0 0.13845271801506537 2.2572008691020004E-4 68-69 2.3899773908138828E-4 0.001168433391064565 0.0 0.14571559375270532 2.3235891299579415E-4 70-71 2.3899773908138828E-4 0.001175072217150159 0.0 0.15177020314276718 2.3899773908138828E-4 72-73 2.5227539125257655E-4 0.0011817110432357533 0.0 0.15646385318528222 2.5227539125257655E-4 74-75 2.5891421733817064E-4 0.0012149051736637237 0.0 0.15998906983673267 2.5227539125257655E-4 76-77 2.6555304342376477E-4 0.001274654608434071 0.0 0.16377320070552132 2.5227539125257655E-4 78-79 2.6555304342376477E-4 0.0013144875649476356 0.0 0.16630259344413267 2.5227539125257655E-4 80-81 2.78830695594953E-4 0.0013211263910332298 0.0 0.16723202909611587 2.5891421733817064E-4 82-83 2.9210834776614126E-4 0.0013277652171188239 0.0 0.16800213292204477 2.6555304342376477E-4 84-85 2.9210834776614126E-4 0.0013410428692900121 0.0 0.16836062953066688 2.6555304342376477E-4 86-87 2.9874717385173534E-4 0.0013543205214612004 0.0 0.16847348957412195 2.6555304342376477E-4 88 3.1866365210851775E-4 0.0014339864344883298 0.0 0.16848012840020757 2.6555304342376477E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9135 0.0 52.413784 1 GTATCAA 16670 0.0 36.693623 1 TCAACGC 20180 0.0 29.766829 4 ATCAACG 20485 0.0 29.282642 3 CAACGCA 20675 0.0 29.013348 5 TATCAAC 21460 0.0 28.208525 2 AACGCAG 21335 0.0 28.175133 6 ACGCAGA 24680 0.0 24.322075 7 CGCAGAG 25565 0.0 23.496603 8 GTACATG 24685 0.0 22.45538 1 TACATGG 24835 0.0 21.861128 2 ACATGGG 24240 0.0 21.770647 3 GCAGAGT 29860 0.0 20.088646 9 CATGGGG 15685 0.0 19.014227 4 GAGTACT 17510 0.0 18.80302 12-13 GTGGTAT 4395 0.0 18.332964 1 CAGAGTA 29575 0.0 18.199806 10-11 AGAGTAC 27485 0.0 17.987581 10-11 TGGTATC 4295 0.0 17.188305 2 GTACTTT 20155 0.0 16.304321 14-15 >>END_MODULE