##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139160_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6599691 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.825522740382844 18.0 18.0 30.0 18.0 33.0 2 30.3627422859646 31.0 29.0 33.0 27.0 33.0 3 31.587412350063055 33.0 31.0 33.0 29.0 33.0 4 32.541309737077086 33.0 33.0 33.0 31.0 34.0 5 32.96333388941997 33.0 33.0 34.0 32.0 34.0 6 36.95949946747507 38.0 38.0 38.0 35.0 38.0 7 37.0597726469315 38.0 38.0 38.0 36.0 38.0 8 37.047865422790245 38.0 38.0 38.0 36.0 38.0 9 37.26995172955825 38.0 38.0 38.0 36.0 38.0 10-11 37.301217814591624 38.0 38.0 38.0 37.0 38.0 12-13 37.35836609623087 38.0 38.0 38.0 37.0 38.0 14-15 37.26418850518911 38.0 38.0 38.0 36.5 38.0 16-17 37.33533069957366 38.0 38.0 38.0 37.0 38.0 18-19 37.378788037197495 38.0 38.0 38.0 37.0 38.0 20-21 37.39818651811216 38.0 38.0 38.0 37.0 38.0 22-23 37.4177495610309 38.0 38.0 38.0 37.0 38.0 24-25 37.43038484972153 38.0 38.0 38.0 37.0 38.0 26-27 37.397887450388026 38.0 38.0 38.0 37.0 38.0 28-29 37.37440878858929 38.0 38.0 38.0 37.0 38.0 30-31 37.37348487085254 38.0 38.0 38.0 37.0 38.0 32-33 37.35511819235316 38.0 38.0 38.0 37.0 38.0 34-35 37.3307618761623 38.0 38.0 38.0 37.0 38.0 36-37 37.308037146325375 38.0 38.0 38.0 37.0 38.0 38-39 37.303181761703584 38.0 38.0 38.0 37.0 38.0 40-41 37.29084138473295 38.0 38.0 38.0 37.0 38.0 42-43 37.25469443252858 38.0 38.0 38.0 37.0 38.0 44-45 37.16827512787876 38.0 38.0 38.0 37.0 38.0 46-47 37.18791548938201 38.0 38.0 38.0 37.0 38.0 48-49 37.143240286373924 38.0 38.0 38.0 36.5 38.0 50-51 37.0867946799078 38.0 38.0 38.0 36.0 38.0 52-53 37.05993585913374 38.0 38.0 38.0 36.0 38.0 54-55 37.02838703640104 38.0 38.0 38.0 36.0 38.0 56-57 36.98095454475052 38.0 38.0 38.0 36.0 38.0 58-59 36.96782943881479 38.0 38.0 38.0 36.0 38.0 60-61 36.97420860931171 38.0 38.0 38.0 36.0 38.0 62-63 36.97675460585819 38.0 38.0 38.0 36.0 38.0 64-65 36.935714646760175 38.0 38.0 38.0 36.0 38.0 66-67 36.96119271238092 38.0 38.0 38.0 36.0 38.0 68-69 36.94610858361766 38.0 38.0 38.0 36.0 38.0 70-71 36.94998253951684 38.0 38.0 38.0 36.0 38.0 72-73 36.934259984331696 38.0 38.0 38.0 36.0 38.0 74-75 36.9251385758763 38.0 38.0 38.0 35.5 38.0 76-77 36.90824667690572 38.0 38.0 38.0 35.0 38.0 78-79 36.88575497412017 38.0 38.0 38.0 35.0 38.0 80-81 36.852819831264384 38.0 38.0 38.0 35.0 38.0 82-83 36.8155510611343 38.0 38.0 38.0 35.0 38.0 84-85 36.791879182055325 38.0 38.0 38.0 35.0 38.0 86-87 36.78188591240202 38.0 38.0 38.0 35.0 38.0 88-89 36.763151970498456 38.0 38.0 38.0 35.0 38.0 90-91 36.73874532097868 38.0 38.0 38.0 35.0 38.0 92-93 36.709274529542725 38.0 38.0 38.0 34.0 38.0 94-95 36.67812926521309 38.0 38.0 38.0 34.0 38.0 96-97 36.68236334101808 38.0 38.0 38.0 34.0 38.0 98-99 36.689389662593186 38.0 38.0 38.0 34.0 38.0 100 35.21092446956379 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 4.0 19 9.0 20 18.0 21 106.0 22 365.0 23 1212.0 24 2888.0 25 6272.0 26 11012.0 27 19085.0 28 29720.0 29 43055.0 30 57363.0 31 74346.0 32 97361.0 33 132522.0 34 198053.0 35 359077.0 36 1157149.0 37 4410073.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.98661725223196 18.666873949098527 15.498346816540352 23.848161982129163 2 14.532128347013757 21.272454280024313 41.97576602257993 22.219651350382 3 18.124652156790784 26.437523382109546 31.17216096679843 24.265663494301243 4 12.464053241280538 17.648826285957934 39.46413551785985 30.42298495490168 5 13.223103930168852 37.41246370474012 35.86442153125048 13.500010833840554 6 29.41674713799607 38.15975946636031 19.183960868281225 13.2395325273624 7 25.881060189030062 32.68072702191663 24.260150967674093 17.178061821379213 8 23.866768913877937 37.11570738690645 21.85743241615403 17.160091283061586 9 25.97761016386979 16.457558391748947 21.69021246600788 35.87461897837338 10-11 24.252464888502338 26.525601960092065 29.432253636155636 19.789679515249958 12-13 24.971153952510807 24.278076049318067 29.493774784304293 21.25699521386683 14-15 22.194569412416428 25.40081800799462 27.104647778206587 25.29996480138237 16-17 21.73774499442474 28.287309208870536 27.817969053399622 22.156976743305105 18-19 21.779163600235226 27.576730486321253 29.460818695905612 21.183287217537913 20-21 22.63284672063732 26.859026770567347 29.221891934646095 21.28623457414924 22-23 22.36987203377137 26.709515274523817 29.100810349489688 21.819802342215127 24-25 22.0634844384826 26.879628634810445 29.206010362474455 21.850876564232504 26-27 21.94599077423287 26.961835744728766 29.205578138904226 21.886595342134132 28-29 21.979590161268792 27.045746381081447 29.15224174452505 21.822421713124715 30-31 22.24595035220829 26.90414764743927 29.04498421365547 21.80491778669697 32-33 22.005676108765023 27.120724933784945 28.969154219316678 21.904444738133353 34-35 22.190615822794378 27.043095856110728 29.017788923259268 21.748499397835626 36-37 22.171724561448713 26.95144126535405 28.989598938912632 21.887235234284606 38-39 21.979335109463687 27.143851113942624 29.07825012548747 21.79856365110622 40-41 22.25941279976878 27.00952659328629 28.893763586058835 21.8372970208861 42-43 22.12343240618279 27.104918988307514 28.725513601080156 22.046135004429544 44-45 22.13380481778387 27.252531999711916 28.61888982190329 21.994773360600924 46-47 22.25499078589078 27.111401751396514 28.41772355880943 22.215883903903276 48-49 22.219566168349473 27.21490851120072 28.379625847132356 22.18589947331745 50-51 22.127400645641497 27.40182113807334 28.294439362417183 22.17633885386798 52-53 22.33076084037974 27.31560411099045 28.121115091699593 22.232519956930222 54-55 22.339080641873576 27.177641292333142 28.183684336893894 22.29959372889939 56-57 22.269737704895984 27.344051064184654 28.164912809290122 22.22129842162924 58-59 22.268629399623926 27.32532337859435 28.207674470109183 22.198372751672537 60-61 22.32940068889769 27.25574830732082 28.26363068680473 22.151220316976758 62-63 22.333639810020312 27.292419881273972 28.276361000271887 22.097579308433822 64-65 22.22450311360665 27.206457824862312 28.295152993808724 22.273886067722316 66-67 22.28450258039376 27.21568543345945 28.212943169655674 22.286868816491122 68-69 22.241387751281188 27.233611051682725 28.306029851838314 22.21897134519777 70-71 22.23929896777714 26.90505956751672 28.291080565590526 22.564560899115612 72-73 22.329006573951837 26.993414291412897 28.338469104042918 22.339110030592348 74-75 22.166543178590512 27.280928189392313 28.238617235764625 22.313911396252553 76-77 22.304618291263154 27.22147716860494 28.035110807053627 22.438793733078278 78-79 22.249820553224204 27.173299575865183 28.018904740430468 22.557975130480145 80-81 22.32904745878107 27.282250613900988 27.95064613012686 22.43805579719108 82-83 22.455863790461652 27.210668921430937 28.03575088163015 22.297716406477264 84-85 22.49102721995367 27.232449226412207 27.909829121255758 22.366694432378363 86-87 22.277333169521224 27.327301699387235 27.94731986612362 22.448045264967924 88-89 22.428853623556176 27.297187628451415 27.817661618737144 22.456297129255265 90-91 22.468719139598527 27.355039883899412 27.86231234693369 22.313928629568366 92-93 22.56430605602122 27.32509026603295 27.80185485153181 22.30874882641402 94-95 22.35764885882703 27.319738210282924 27.85284268366238 22.46977024722766 96-97 22.45477249245312 27.403193906405793 27.936712459813783 22.205321141327307 98-99 23.524630474975297 29.383666657613322 28.12318483868866 18.968518028722723 100 30.13974789991037 40.43318970437448 29.427062395715154 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1257.0 1 1264.5 2 1895.5 3 2738.5 4 3458.0 5 4798.0 6 6019.5 7 7511.5 8 9061.5 9 9469.0 10 8920.0 11 8363.5 12 9068.5 13 11270.5 14 15390.0 15 20302.0 16 24105.5 17 26289.0 18 26151.5 19 24362.0 20 22736.5 21 22192.5 22 23571.0 23 27678.5 24 34981.5 25 45488.5 26 59680.0 27 75152.0 28 89183.0 29 104305.5 30 118299.0 31 129995.5 32 144887.5 33 162600.5 34 178560.5 35 192890.0 36 209384.5 37 223115.0 38 231786.5 39 239237.0 40 247495.0 41 255203.0 42 259612.0 43 264355.0 44 269666.5 45 274606.5 46 277007.0 47 278185.5 48 279389.0 49 278098.0 50 274487.0 51 268216.5 52 259040.5 53 246311.0 54 230847.0 55 214749.0 56 197071.0 57 177953.5 58 158699.0 59 136215.0 60 113819.0 61 92669.5 62 72643.5 63 56238.5 64 42385.0 65 31671.0 66 23434.5 67 17678.0 68 13378.0 69 9655.5 70 6987.0 71 4953.5 72 3400.5 73 2255.0 74 1474.5 75 948.0 76 633.5 77 414.0 78 270.0 79 174.5 80 108.5 81 67.5 82 43.5 83 33.5 84 24.5 85 15.5 86 13.0 87 11.0 88 5.5 89 2.5 90 1.0 91 0.5 92 1.0 93 1.0 94 0.5 95 0.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0017273535988275815 3 0.001424309107805199 4 0.0 5 0.0 6 4.8487118563581233E-4 7 0.0 8 0.0 9 0.0 10-11 1.5152224551119135E-5 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 2.2729161658359033E-4 24-25 0.001106215476227278 26-27 0.0027355402449498216 28-29 0.0017435061408181394 30-31 0.0026030360203267515 32-33 0.0034541491749642966 34-35 8.548844356533829E-4 36-37 7.668588747312255E-6 38-39 5.405611194310332E-5 40-41 0.0 42-43 5.176138503427781E-4 44-45 0.0 46-47 0.0 48-49 2.6668218272093405E-4 50-51 0.006326057061687708 52-53 0.0 54-55 0.0027776458719400467 56-57 0.04551825053288788 58-59 0.05643180763038899 60-61 0.0371046332629387 62-63 0.008908950268018872 64-65 0.0 66-67 0.0 68-69 7.531855714750692E-4 70-71 0.0028862124361266664 72-73 0.009836125194862733 74-75 0.004579501020169776 76-77 0.0037217356032035872 78-79 0.0038442906241843372 80-81 0.01663722379292652 82-83 0.05358899321717015 84-85 0.03506226120752135 86-87 0.009413641196414772 88-89 0.008106729964014226 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 32.0 20-21 140.0 22-23 342.0 24-25 572.0 26-27 1797.0 28-29 4613.0 30-31 15892.0 32-33 19859.0 34-35 26560.0 36-37 42529.0 38-39 50449.0 40-41 48549.0 42-43 54973.0 44-45 64418.0 46-47 65925.0 48-49 62708.0 50-51 57978.0 52-53 55229.0 54-55 60848.0 56-57 63613.0 58-59 63077.0 60-61 61006.0 62-63 59133.0 64-65 61373.0 66-67 65173.0 68-69 67203.0 70-71 65835.0 72-73 62082.0 74-75 61694.0 76-77 64707.0 78-79 67468.0 80-81 66732.0 82-83 62278.0 84-85 61107.0 86-87 63421.0 88-89 65535.0 90-91 66269.0 92-93 65626.0 94-95 72963.0 96-97 202231.0 98-99 1455381.0 100-101 3022371.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.54249520939521 #Duplication Level Percentage of deduplicated Percentage of total 1 90.52174932655662 77.43456308113043 2 6.56739379306385 11.235825041627525 3 1.5762532962005977 4.045099201170991 4 0.5787841617582695 1.9804256553792237 5 0.2873663891259879 1.2291018982575508 6 0.1449595772873754 0.744012236739676 7 0.0869618684301206 0.5207254649508554 8 0.053834580217117255 0.3684115456258044 9 0.042054478562900934 0.323770052790051 >10 0.1367326200614833 1.812989743401208 >50 0.0033712947188894293 0.18430077317286625 >100 4.8005316839499357E-4 0.07721821544467103 >500 5.856084840130728E-5 0.04355709030913996 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.545667365335741E-5 0.0 0.0 0.0 3 0.0 4.545667365335741E-5 0.0 0.0 0.0 4 0.0 1.2121779640895308E-4 0.0 1.5152224551119135E-5 0.0 5 0.0 1.2121779640895308E-4 0.0 1.5152224551119135E-5 0.0 6 0.0 1.2121779640895308E-4 0.0 1.5152224551119135E-5 0.0 7 1.5152224551119135E-5 1.3637002096007222E-4 0.0 1.5152224551119135E-5 0.0 8 1.5152224551119135E-5 1.8182669461342963E-4 0.0 1.5152224551119135E-5 0.0 9 7.576112275559568E-5 3.788056137779784E-4 0.0 1.5152224551119135E-5 0.0 10-11 9.848945958227439E-5 3.788056137779784E-4 0.0 2.2728336826678704E-5 0.0 12-13 1.0606557185783395E-4 3.939578383290975E-4 0.0 3.030444910223827E-5 0.0 14-15 1.0606557185783395E-4 4.8487118563581233E-4 0.0 3.030444910223827E-5 0.0 16-17 1.0606557185783395E-4 4.8487118563581233E-4 0.0 3.030444910223827E-5 0.0 18-19 1.1364168413339351E-4 5.454800838402889E-4 0.0 3.030444910223827E-5 0.0 20-21 1.3637002096007222E-4 5.757845329425271E-4 0.0 3.030444910223827E-5 0.0 22-23 1.6667447006231048E-4 6.13665094320325E-4 0.0 3.788056137779784E-5 0.0 24-25 1.6667447006231048E-4 6.666978802492419E-4 0.0 5.3032785928916975E-5 0.0 26-27 1.6667447006231048E-4 6.970023293514803E-4 0.0 1.1364168413339351E-4 0.0 28-29 1.6667447006231048E-4 6.970023293514803E-4 0.0 3.712295015024188E-4 0.0 30-31 1.818266946134296E-4 7.576112275559568E-4 0.0 0.0016288641392453072 0.0 32-33 1.9697891916454875E-4 7.87915676658195E-4 0.0 0.0042350467620377984 0.0 34-35 1.9697891916454875E-4 9.773184835471843E-4 0.0 0.007318524458190543 0.0 36-37 1.9697891916454875E-4 0.0011667212904361735 0.0 0.012568770265153323 0.0 38-39 2.121311437156679E-4 0.0012349063009162095 0.0 0.020349437572153 0.0 40-41 2.575878173690253E-4 0.0014091568832540796 0.0 0.028630128289339606 0.0 42-43 2.8789226647126355E-4 0.001454613556907437 0.0 0.03687293844514841 0.0 44-45 2.8789226647126355E-4 0.0016364402515208667 0.0 0.046494601035109065 0.0 46-47 2.8789226647126355E-4 0.001772810272480939 0.0 0.05659355869842997 0.0 48-49 3.0304449102238273E-4 0.001787962497032058 0.0 0.06717738754738668 0.0 50-51 3.4850116467574014E-4 0.001977365303921047 0.0 0.07784455363137456 0.0 52-53 3.4850116467574014E-4 0.0019849414161966067 0.0 0.08787532628421543 0.0 54-55 3.4850116467574014E-4 0.002000093640747726 0.0 0.09667876874841565 0.0 56-57 3.6365338922685926E-4 0.0020607025389522025 0.0 0.10405032599253511 0.0 58-59 3.788056137779784E-4 0.0020607025389522025 0.0 0.11152037269623684 0.0 60-61 3.788056137779784E-4 0.002068278651227762 0.0 0.11930104000323652 0.0 62-63 4.015339506046571E-4 0.0020910069880544406 0.0 0.12689988061562277 0.0 64-65 4.242622874313358E-4 0.0022879859072189894 0.0 0.13421082896153774 0.0 66-67 4.394145119824549E-4 0.0022879859072189894 0.0 0.14100660167271467 0.0 68-69 4.394145119824549E-4 0.0023107142440456684 0.0 0.14865847507102983 0.0 70-71 4.394145119824549E-4 0.002318290356321228 0.0 0.15490119158609092 0.0 72-73 4.469906242580145E-4 0.0023258664685967875 0.0 0.15976505566700017 0.0 74-75 4.545667365335741E-4 0.0023940514790768237 0.0 0.163242491201482 0.0 76-77 4.545667365335741E-4 0.002500117050934657 0.0 0.16673507896051498 0.0 78-79 4.545667365335741E-4 0.0025455737245880148 0.0 0.1692579243482763 0.0 80-81 4.697189610846932E-4 0.0025683020614146934 0.0 0.17005341613721006 0.0 82-83 4.697189610846932E-4 0.002598606510516932 0.0 0.17071253790518376 0.0 84-85 5.000234101869315E-4 0.0026213348473436105 0.0 0.17105346295758392 0.0 86-87 5.151756347380506E-4 0.0026364870718947296 0.0 0.1712655941012996 0.0 88 5.151756347380506E-4 0.0027425526437525635 0.0 0.1712655941012996 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7480 0.0 50.647858 1 GTATCAA 14090 0.0 37.749447 1 TCAACGC 17480 0.0 29.948904 4 ATCAACG 17670 0.0 29.65076 3 CAACGCA 17670 0.0 29.532219 5 AACGCAG 18150 0.0 28.935503 6 TATCAAC 18475 0.0 28.744432 2 ACGCAGA 20985 0.0 24.986378 7 CGCAGAG 21555 0.0 24.228643 8 GTACATG 19790 0.0 21.129475 1 TACATGG 19380 0.0 21.101803 2 ACATGGG 19240 0.0 20.689651 3 GCAGAGT 25515 0.0 20.55023 9 GAGTACT 14955 0.0 18.998434 12-13 AGAGTAC 22715 0.0 18.941631 10-11 GTGGTAT 3925 0.0 18.21759 1 CAGAGTA 24710 0.0 18.139978 10-11 CATGGGG 13985 0.0 17.909454 4 AGTACTT 16395 0.0 17.215002 12-13 GTACTTT 17235 0.0 16.54599 14-15 >>END_MODULE