##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139159_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7560070 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.86565560900891 33.0 32.0 34.0 28.0 34.0 2 32.19741576466885 33.0 33.0 34.0 29.0 34.0 3 31.97413820242405 33.0 31.0 33.0 29.0 34.0 4 32.562785397489705 33.0 33.0 34.0 31.0 34.0 5 32.85397701344035 33.0 33.0 34.0 31.0 34.0 6 36.58662089107641 38.0 37.0 38.0 34.0 38.0 7 37.06256833600747 38.0 38.0 38.0 36.0 38.0 8 37.0144736755083 38.0 38.0 38.0 36.0 38.0 9 37.12257108730475 38.0 38.0 38.0 36.0 38.0 10-11 37.229591987904875 38.0 38.0 38.0 36.0 38.0 12-13 37.30936380218702 38.0 38.0 38.0 37.0 38.0 14-15 37.27013896696724 38.0 38.0 38.0 37.0 38.0 16-17 37.33662942274344 38.0 38.0 38.0 37.0 38.0 18-19 37.3559505401405 38.0 38.0 38.0 37.0 38.0 20-21 37.37026017259846 38.0 38.0 38.0 37.0 38.0 22-23 37.380670275502126 38.0 38.0 38.0 37.0 38.0 24-25 37.394809830137916 38.0 38.0 38.0 37.0 38.0 26-27 37.36595095239915 38.0 38.0 38.0 37.0 38.0 28-29 37.346753129312134 38.0 38.0 38.0 37.0 38.0 30-31 37.342454584187436 38.0 38.0 38.0 37.0 38.0 32-33 37.32723122401455 38.0 38.0 38.0 37.0 38.0 34-35 37.30947112734623 38.0 38.0 38.0 37.0 38.0 36-37 37.292013935126775 38.0 38.0 38.0 37.0 38.0 38-39 37.28874957369046 38.0 38.0 38.0 37.0 38.0 40-41 37.280702334238995 38.0 38.0 38.0 37.0 38.0 42-43 37.240243237486 38.0 38.0 38.0 37.0 38.0 44-45 37.156239179165574 38.0 38.0 38.0 36.0 38.0 46-47 37.19014279972521 38.0 38.0 38.0 37.0 38.0 48-49 37.15317556110552 38.0 38.0 38.0 36.0 38.0 50-51 37.11084447389665 38.0 38.0 38.0 36.0 38.0 52-53 37.087091943348796 38.0 38.0 38.0 36.0 38.0 54-55 37.05323849100769 38.0 38.0 38.0 36.0 38.0 56-57 37.003040502394676 38.0 38.0 38.0 36.0 38.0 58-59 36.98452088010968 38.0 38.0 38.0 36.0 38.0 60-61 36.989055979102986 38.0 38.0 38.0 36.0 38.0 62-63 36.98928313818288 38.0 38.0 38.0 36.0 38.0 64-65 36.94774862241497 38.0 38.0 38.0 36.0 38.0 66-67 36.96884164596262 38.0 38.0 38.0 36.0 38.0 68-69 36.95029831861991 38.0 38.0 38.0 36.0 38.0 70-71 36.947701856676275 38.0 38.0 38.0 36.0 38.0 72-73 36.923973728428635 38.0 38.0 38.0 35.0 38.0 74-75 36.91039429836634 38.0 38.0 38.0 35.0 38.0 76-77 36.891697737018546 38.0 38.0 38.0 35.0 38.0 78-79 36.8631247376734 38.0 38.0 38.0 35.0 38.0 80-81 36.82397412772008 38.0 38.0 38.0 35.0 38.0 82-83 36.77961461603498 38.0 38.0 38.0 35.0 38.0 84-85 36.75327351630436 38.0 38.0 38.0 35.0 38.0 86-87 36.7420506716406 38.0 38.0 38.0 35.0 38.0 88-89 36.721468559995 38.0 38.0 38.0 34.5 38.0 90-91 36.69531581355396 38.0 38.0 38.0 34.0 38.0 92-93 36.6629919561038 38.0 38.0 38.0 34.0 38.0 94-95 36.6271512641608 38.0 38.0 38.0 34.0 38.0 96-97 36.61695980634521 38.0 38.0 38.0 34.0 38.0 98-99 36.622761158667224 38.0 38.0 38.0 34.0 38.0 100 35.12789627094207 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 5.0 20 19.0 21 89.0 22 384.0 23 1410.0 24 3393.0 25 7069.0 26 12770.0 27 21064.0 28 32088.0 29 46317.0 30 62732.0 31 83196.0 32 109613.0 33 149384.0 34 220012.0 35 381222.0 36 1004217.0 37 5425083.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.97967743684913 19.034307883392614 13.219414635049676 25.766600044708582 2 14.299760195335839 20.35519503358707 43.03690139939626 22.308143371680828 3 18.348563054298815 25.85750928353578 29.977874013758665 25.816053648406744 4 12.296169215364408 17.279694500183197 39.87652230733313 30.54761397711926 5 13.380643300921816 37.0361782364449 35.98399221171233 13.599186250920958 6 29.735301349954785 37.95264860686417 19.11887662894504 13.193173414236 7 26.15668902536617 32.28915869826602 24.187328953303343 17.36682332306447 8 23.69653984685327 37.33039508893436 21.808779548337515 17.16428551587485 9 25.709709037085638 16.543722478760117 21.607445433706303 36.13912305044795 10-11 24.115927498025812 26.51497935865673 29.503509888135955 19.865583255181498 12-13 24.81299114955285 24.165424394218572 29.562193207205755 21.459391249022826 14-15 22.101647206970306 25.384837706529172 26.850346623774644 25.66316846272587 16-17 21.802595743161106 28.39014056748152 27.600723273726302 22.20654041563107 18-19 21.89075630252101 27.74905523361556 29.072336631803676 21.287851832059758 20-21 22.538734065501483 27.077734797246357 28.863862914503308 21.51966822274885 22-23 22.34778642631428 26.90638587928843 28.729419564487845 22.016408129909447 24-25 22.12882780682463 26.985449851200606 28.811284214882026 22.074438127092737 26-27 22.024471620433683 27.12150760391217 28.8393394439288 22.014681331725345 28-29 22.02923821517408 27.093520046286518 28.865578001834734 22.01166373670467 30-31 22.24820824179962 27.06092842193148 28.696981339540308 21.993881996728597 32-33 22.014571564541598 27.230407139628564 28.68364757708082 22.071373718749022 34-35 22.174011568649046 27.167431288061223 28.700079296124603 21.958477847165124 36-37 22.18309508582396 27.096843471356273 28.61318186097733 22.106879581842428 38-39 21.980988307881955 27.255006441838308 28.747688346793833 22.016316903485908 40-41 22.241765272391685 27.081469091054807 28.662594732839246 22.014170903714263 42-43 22.097106515639048 27.16206388661887 28.478168857130587 22.262660740611494 44-45 22.11692453721633 27.283816444287712 28.403972667762194 22.195286350733763 46-47 22.19863497544813 27.241866947725747 28.26193581681546 22.297562260010668 48-49 22.112228294425282 27.335988214879634 28.21964823286197 22.332135257833112 50-51 22.14844252892812 27.426508712881276 28.13395292730737 22.291095830883233 52-53 22.298953661117558 27.297267166714335 28.057461197272115 22.34631797489599 54-55 22.282219490706733 27.204936721114727 28.093939205044734 22.41890458313381 56-57 22.17279424606663 27.306703438472034 28.101262281887834 22.4192400335735 58-59 22.15489743662737 27.266084444444772 28.11796114256141 22.461056976366454 60-61 22.152616576029025 27.289771976338123 28.188645739735296 22.368965707897555 62-63 22.139239909214727 27.313758530525384 28.231545732095075 22.315455828164808 64-65 22.081406422712966 27.24152577025861 28.220719846447633 22.45634796058079 66-67 22.106657685856344 27.307945480427776 28.02708320684707 22.558313626868813 68-69 22.026353141902092 27.346061583225683 28.14011070674209 22.487474568130136 70-71 22.11160161863324 27.078840075143702 28.216403630448667 22.59315467577439 72-73 22.213360291410993 27.177665473487256 28.05224392159579 22.556730313505962 74-75 22.118182817140276 27.316497311794087 28.000809228845103 22.564510642220533 76-77 22.31692022553741 27.22572210442437 27.853870082902983 22.603487587135238 78-79 22.2669731006538 27.298038564508285 27.756652750762616 22.678335584075292 80-81 22.319726235784202 27.35900001017016 27.686421337561473 22.63485241648416 82-83 22.415423594849443 27.341328462120163 27.719024502036948 22.524223440993442 84-85 22.424071845143022 27.34419560081896 27.673102768637463 22.55862978540055 86-87 22.343696758309324 27.431216558752077 27.755423353487185 22.469663329451414 88-89 22.428859307256314 27.423712024462443 27.680859089139336 22.466569579141904 90-91 22.489707724453446 27.41409024291838 27.651874036714723 22.444327995913447 92-93 22.5555892939719 27.456658226908655 27.61123746167855 22.376515017440898 94-95 22.419986057828986 27.40769959876686 27.732049093012662 22.440265250391498 96-97 22.543628481023273 27.510244306225935 27.770707761459 22.175419451291795 98-99 23.576002172804916 29.407643954069428 28.005639383707337 19.010714489418316 100 30.072344688809988 40.48867432402133 29.438980987168677 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1111.0 1 1085.5 2 1628.0 3 2346.5 4 2922.0 5 4301.5 6 5591.0 7 6828.0 8 8020.0 9 8171.0 10 7527.0 11 7075.5 12 7695.5 13 9509.5 14 13026.0 15 17269.0 16 20638.5 17 22865.5 18 23231.5 19 21918.5 20 20641.5 21 20444.0 22 22063.0 23 26276.5 24 33498.5 25 44048.5 26 58094.5 27 74012.0 28 90449.5 29 109177.0 30 127743.0 31 145025.5 32 165027.0 33 186244.0 34 204861.0 35 223602.0 36 244624.5 37 260481.0 38 273779.0 39 285923.0 40 295525.5 41 303481.0 42 308122.0 43 313408.5 44 319276.0 45 323178.0 46 322936.0 47 321088.5 48 319522.5 49 316490.0 50 310969.0 51 302794.0 52 291869.0 53 277585.5 54 258732.5 55 239428.5 56 218908.5 57 196199.5 58 173881.0 59 149364.0 60 125420.5 61 102805.0 62 81804.5 63 63310.5 64 47012.5 65 34788.5 66 25671.0 67 19361.0 68 14869.5 69 10875.5 70 7971.0 71 5756.0 72 3997.0 73 2685.5 74 1788.5 75 1167.5 76 771.5 77 479.5 78 292.0 79 173.0 80 108.5 81 72.0 82 55.0 83 45.5 84 35.5 85 23.0 86 12.5 87 8.5 88 8.5 89 7.5 90 5.5 91 3.0 92 2.5 93 3.0 94 2.5 95 2.0 96 2.0 97 1.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.00220897425552938 3 0.002394157726052801 4 0.0 5 0.0 6 5.158682393152444E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 2.3810131660768587E-4 24-25 0.0010715108481544118 26-27 0.002553347938571741 28-29 0.0015681800000674911 30-31 0.0020199983813521164 32-33 0.003086256898033059 34-35 7.054410334152111E-4 36-37 1.3364105522709925E-5 38-39 4.0337105256045826E-5 40-41 6.7688066045682805E-6 42-43 4.975462450491592E-4 44-45 0.0 46-47 0.0 48-49 1.8200708735598164E-4 50-51 0.006005647852549899 52-53 0.0 54-55 0.0024919111630079737 56-57 0.04424456319938898 58-59 0.05607631938064009 60-61 0.03560815950741184 62-63 0.008232036863404388 64-65 0.0 66-67 0.0 68-69 4.545856247851794E-4 70-71 0.002510340341340799 72-73 0.009337808225552234 74-75 0.004553100434139323 76-77 0.0034356900123684838 78-79 0.003314366882454264 80-81 0.015409967553916491 82-83 0.05246677125417016 84-85 0.034007173531134104 86-87 0.00901945956975806 88-89 0.00812662814737536 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 36.0 20-21 148.0 22-23 369.0 24-25 555.0 26-27 1577.0 28-29 4251.0 30-31 15412.0 32-33 18958.0 34-35 26127.0 36-37 43271.0 38-39 50021.0 40-41 50322.0 42-43 55194.0 44-45 66260.0 46-47 68197.0 48-49 66886.0 50-51 59773.0 52-53 55329.0 54-55 60278.0 56-57 63576.0 58-59 69176.0 60-61 68526.0 62-63 65613.0 64-65 68301.0 66-67 73600.0 68-69 75778.0 70-71 75157.0 72-73 69728.0 74-75 69918.0 76-77 73663.0 78-79 76713.0 80-81 76920.0 82-83 71383.0 84-85 69508.0 86-87 72063.0 88-89 75985.0 90-91 77313.0 92-93 76268.0 94-95 85691.0 96-97 236886.0 98-99 1701930.0 100-101 3523410.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.54304255238608 #Duplication Level Percentage of deduplicated Percentage of total 1 90.68944318040145 78.48540340213684 2 6.589419548778444 11.405368328109152 3 1.5519081075798706 4.029205481750331 4 0.5482075429474204 1.897741948673505 5 0.2479716369341234 1.0730109963487338 6 0.12481925901685331 0.6481343066671702 7 0.07565976435956569 0.45834783445313787 8 0.04638378357591558 0.3211355004600903 9 0.02947320498376346 0.22956307497585351 >10 0.09429491371821022 1.25693412337989 >50 0.00196404337196213 0.11586933088797398 >100 4.0759616428472957E-4 0.05259103531441001 >500 4.741816812496244E-5 0.026694636842886088 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.9682172255018806E-5 2 0.0 3.9682172255018806E-5 0.0 1.3227390751672934E-5 3.9682172255018806E-5 3 0.0 3.9682172255018806E-5 0.0 1.3227390751672934E-5 3.9682172255018806E-5 4 0.0 1.0581912601338347E-4 0.0 1.3227390751672934E-5 3.9682172255018806E-5 5 0.0 1.190465167650564E-4 0.0 1.3227390751672934E-5 3.9682172255018806E-5 6 1.3227390751672935E-4 1.190465167650564E-4 0.0 1.3227390751672934E-5 5.2909563006691734E-5 7 1.3227390751672935E-4 1.190465167650564E-4 0.0 2.6454781503345867E-5 5.2909563006691734E-5 8 1.3227390751672935E-4 1.3227390751672935E-4 0.0 2.6454781503345867E-5 5.2909563006691734E-5 9 1.7195607977174814E-4 2.380930335301128E-4 0.0 2.6454781503345867E-5 6.613695375836468E-5 10-11 1.8518347052342107E-4 2.380930335301128E-4 0.0 6.613695375836468E-5 6.613695375836468E-5 12-13 1.9841086127509402E-4 2.5132042428178573E-4 0.0 6.613695375836468E-5 7.275064913420115E-5 14-15 1.9841086127509402E-4 3.1745737804015045E-4 0.0 6.613695375836468E-5 9.9205430637547E-5 16-17 2.579341196576222E-4 3.1745737804015045E-4 0.0 7.936434451003761E-5 1.190465167650564E-4 18-19 2.645478150334587E-4 3.439121595434963E-4 0.0 7.936434451003761E-5 1.4550129826840227E-4 20-21 2.645478150334587E-4 3.835943317985151E-4 0.0 8.597803988587407E-5 1.4550129826840227E-4 22-23 2.645478150334587E-4 4.2989019942937036E-4 0.0 9.259173526171053E-5 1.8518347052342107E-4 24-25 2.645478150334587E-4 4.827997624360621E-4 0.0 9.259173526171053E-5 2.2486564277843989E-4 26-27 3.0422998728847747E-4 4.894134578118986E-4 0.0 1.2566021214089286E-4 2.2486564277843989E-4 28-29 3.0422998728847747E-4 4.894134578118986E-4 0.0 3.968217225501881E-4 2.2486564277843989E-4 30-31 3.1084368266431396E-4 6.084599745769549E-4 0.0 0.0018452210098583743 2.2486564277843989E-4 32-33 3.2407107341598693E-4 6.084599745769549E-4 0.0 0.004880907187367313 2.380930335301128E-4 34-35 3.3068476879182337E-4 7.07665405214502E-4 0.0 0.008577962902459896 2.645478150334587E-4 36-37 3.3068476879182337E-4 8.06870835852049E-4 0.0 0.0159059373788867 2.97616291912641E-4 38-39 3.3068476879182337E-4 8.597803988587407E-4 6.613695375836467E-6 0.037810496463657084 3.1745737804015045E-4 40-41 3.3068476879182337E-4 9.126899618654324E-4 1.3227390751672934E-5 0.06193725719470851 3.1745737804015045E-4 42-43 3.439121595434963E-4 9.457584387446147E-4 1.3227390751672934E-5 0.07549533271517328 3.1745737804015045E-4 44-45 3.439121595434963E-4 0.0010185090878788161 1.3227390751672934E-5 0.09187084246574437 3.1745737804015045E-4 46-47 3.439121595434963E-4 0.0010714186508855076 1.3227390751672934E-5 0.10996591301403294 3.1745737804015045E-4 48-49 3.439121595434963E-4 0.001091259737013017 1.3227390751672934E-5 0.1275649564091338 3.3068476879182337E-4 50-51 3.769806364226786E-4 0.0012235336445297464 1.3227390751672934E-5 0.14561373108979148 3.372984641676598E-4 52-53 3.9682172255018803E-4 0.0012301473399055829 1.3227390751672934E-5 0.20233278263296506 3.571395502951692E-4 54-55 3.9682172255018803E-4 0.0012367610352814193 1.3227390751672934E-5 0.2745344950509717 3.769806364226786E-4 56-57 4.1004911330186095E-4 0.0012566021214089288 1.3227390751672934E-5 0.3739581776359214 3.9682172255018803E-4 58-59 4.232765040535339E-4 0.001276443207536438 1.3227390751672934E-5 0.4328531349577451 4.1004911330186095E-4 60-61 4.629586763085527E-4 0.00132935277054313 1.3227390751672934E-5 0.45420875732632104 4.232765040535339E-4 62-63 4.960271531877351E-4 0.0013888760289256581 1.3227390751672934E-5 0.4719665294104419 4.232765040535339E-4 64-65 5.026408485635715E-4 0.0014682403734356958 1.3227390751672934E-5 0.48152331922852565 4.232765040535339E-4 66-67 5.09254543939408E-4 0.0014814677641873685 1.3227390751672934E-5 0.49022694234312647 4.232765040535339E-4 68-69 5.224819346910809E-4 0.001514536241066551 1.3227390751672934E-5 0.4995919349953109 4.232765040535339E-4 70-71 5.357093254427538E-4 0.0015476047179457334 1.3227390751672934E-5 0.5058484908208523 4.3650389480520685E-4 72-73 5.621641069460997E-4 0.0015476047179457334 1.3227390751672934E-5 0.5107624664850987 4.4973128555687977E-4 74-75 5.687778023219361E-4 0.0015872868902007521 1.3227390751672934E-5 0.5150018452210099 4.4973128555687977E-4 76-77 5.687778023219361E-4 0.0016468101485832805 1.3227390751672934E-5 0.5189369939696326 4.4973128555687977E-4 78-79 5.753914976977726E-4 0.0016931060162141355 1.3227390751672934E-5 0.5215692447292155 4.4973128555687977E-4 80-81 5.886188884494456E-4 0.001699719711589972 1.3227390751672934E-5 0.5223562744789401 4.4973128555687977E-4 82-83 5.952325838252821E-4 0.0017195607977174814 1.3227390751672934E-5 0.5230308714072753 4.629586763085527E-4 84-85 6.349147560803009E-4 0.0017460155792208274 1.3227390751672934E-5 0.5232623507454296 4.629586763085527E-4 86-87 6.481421468319738E-4 0.0017724703607241731 1.3227390751672934E-5 0.5234739889974565 4.629586763085527E-4 88 6.481421468319738E-4 0.0018915168774892297 1.3227390751672934E-5 0.523487216388208 4.629586763085527E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7325 0.0 46.05573 1 GTATCAA 14165 0.0 37.927494 1 TCAACGC 15790 0.0 32.954243 4 CAACGCA 16170 0.0 32.23196 5 ATCAACG 16255 0.0 31.934345 3 AACGCAG 16705 0.0 31.199692 6 TATCAAC 17360 0.0 30.291306 2 ACGCAGA 19445 0.0 26.802979 7 CGCAGAG 20415 0.0 25.508808 8 GTACATG 20395 0.0 23.302444 1 TACATGG 20505 0.0 22.251986 2 ACATGGG 20255 0.0 21.942965 3 GCAGAGT 24750 0.0 21.143124 9 CATGGGG 14570 0.0 18.63823 4 AGAGTAC 21530 0.0 18.508036 10-11 GAGTACT 13965 0.0 18.267832 12-13 CAGAGTA 23725 0.0 17.906528 10-11 GTGGTAT 4530 0.0 16.7562 1 TGGTATC 4265 0.0 15.819845 2 GTACTTT 16285 0.0 15.665508 14-15 >>END_MODULE