##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139157_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8940275 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.680483765879686 33.0 33.0 33.0 33.0 33.0 2 32.69452606323631 33.0 33.0 33.0 33.0 33.0 3 32.67031394448157 33.0 33.0 33.0 33.0 33.0 4 36.611709035795876 37.0 37.0 37.0 37.0 37.0 5 36.63612964925576 37.0 37.0 37.0 37.0 37.0 6 36.60357091923906 37.0 37.0 37.0 37.0 37.0 7 36.512530542964285 37.0 37.0 37.0 37.0 37.0 8 36.54527886446446 37.0 37.0 37.0 37.0 37.0 9 36.59907049839071 37.0 37.0 37.0 37.0 37.0 10-11 36.580448308357404 37.0 37.0 37.0 37.0 37.0 12-13 36.56724737214459 37.0 37.0 37.0 37.0 37.0 14-15 38.69940152847647 40.0 37.0 40.0 37.0 40.0 16-17 38.638259561366965 40.0 37.0 40.0 37.0 40.0 18-19 38.660099381730426 40.0 37.0 40.0 37.0 40.0 20-21 38.66906910611688 40.0 37.0 40.0 37.0 40.0 22-23 38.65075112695921 40.0 37.0 40.0 37.0 40.0 24-25 38.67080513053067 40.0 37.0 40.0 37.0 40.0 26-27 38.59479996028381 40.0 37.0 40.0 37.0 40.0 28-29 38.48535438236826 40.0 37.0 40.0 37.0 40.0 30-31 38.35107750104248 40.0 37.0 40.0 37.0 40.0 32-33 38.25754944980003 40.0 37.0 40.0 37.0 40.0 34-35 38.224004400203626 40.0 37.0 40.0 37.0 40.0 36-37 38.199629312435405 40.0 37.0 40.0 37.0 40.0 38-39 38.162462873500345 40.0 37.0 40.0 37.0 40.0 40-41 38.128455239981136 40.0 37.0 40.0 37.0 40.0 42-43 38.08179409154904 40.0 37.0 40.0 37.0 40.0 44-45 37.98832973183367 40.0 37.0 40.0 33.0 40.0 46-47 37.9015698623675 40.0 37.0 40.0 33.0 40.0 48-49 37.83986119470774 40.0 37.0 40.0 33.0 40.0 50-51 37.798425791965556 40.0 37.0 40.0 33.0 40.0 52-53 37.734517244862445 40.0 37.0 40.0 33.0 40.0 54-55 37.640513184630564 40.0 37.0 40.0 33.0 40.0 56-57 37.48409207224336 40.0 37.0 40.0 33.0 40.0 58-59 37.283373445006575 38.5 37.0 40.0 33.0 40.0 60-61 37.120245523524595 37.0 37.0 40.0 33.0 40.0 62-63 36.98121413721845 37.0 37.0 40.0 33.0 40.0 64-65 36.81371407403462 37.0 37.0 40.0 33.0 40.0 66-67 36.606627792167714 37.0 37.0 40.0 33.0 40.0 68-69 36.411373592977654 37.0 37.0 40.0 33.0 40.0 70-71 36.195010390768594 37.0 37.0 38.5 33.0 40.0 72-73 35.90601750478088 37.0 37.0 37.0 33.0 40.0 74-75 35.567971463452295 37.0 33.0 37.0 33.0 40.0 76-77 33.40767898363639 35.0 33.0 37.0 27.0 37.0 78-79 35.0886537659682 37.0 33.0 37.0 33.0 37.0 80-81 35.30133049648854 37.0 33.0 37.0 33.0 37.0 82-83 35.16527638318999 37.0 33.0 37.0 33.0 37.0 84-85 34.990764216604504 37.0 33.0 37.0 33.0 37.0 86-87 34.86952272987526 37.0 33.0 37.0 33.0 37.0 88-89 34.76776973365996 37.0 33.0 37.0 33.0 37.0 90-91 34.67911958242963 37.0 33.0 37.0 33.0 37.0 92-93 34.65669662404456 37.0 33.0 37.0 33.0 37.0 94-95 34.61816733212234 37.0 33.0 37.0 33.0 37.0 96-97 34.614902895118476 37.0 33.0 37.0 33.0 37.0 98-99 34.62835066110204 37.0 33.0 37.0 33.0 37.0 100 34.58240610420522 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 5.0 20 44.0 21 209.0 22 889.0 23 2655.0 24 6619.0 25 13517.0 26 24281.0 27 39471.0 28 59418.0 29 84584.0 30 116124.0 31 156530.0 32 210349.0 33 286409.0 34 400330.0 35 595585.0 36 1070872.0 37 2645896.0 38 3135289.0 39 91198.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.447349214649435 20.27750824219613 14.921755762546454 23.35338678060798 2 14.32053120757242 20.462428612047514 42.84070193241027 22.376338247969795 3 18.494330431670168 25.615766852809337 30.341046556174167 25.54885615934633 4 12.337774844733524 17.782450763539153 38.94050238946789 30.93927200225944 5 13.244659700065153 37.472314889642654 35.702313407585336 13.580712002706852 6 29.970890157181966 37.78560502892808 18.624136282161345 13.61936853172861 7 26.488804874570416 32.715089860211236 22.909272925049844 17.886832340168507 8 23.895696720738457 37.54838637513947 20.793924124257924 17.761992779864155 9 24.85810559518583 17.59168481953855 21.737989043961175 35.812220541314446 10-11 24.06545659948939 27.073177279222392 28.701175299417525 20.160190821870692 12-13 24.82430645991583 24.48962573075604 29.260471867444526 21.4255959418836 14-15 21.770644639007187 25.981795861984114 27.151933245901272 25.09562625310743 16-17 21.089463131726934 29.194359233916185 27.87209006434366 21.844087570013226 18-19 21.0245322431357 28.046726750575345 30.112188942733866 20.81655206355509 20-21 21.70425754544538 27.146170564791866 30.28757515831435 20.861996731448404 22-23 21.497471041383704 27.07715431035462 30.120546216355855 21.304828431905825 24-25 21.277634135674152 27.23475542931908 30.193025673317464 21.294584761689304 26-27 21.233806623828492 27.333979683344456 30.159648452747195 21.272565240079857 28-29 21.131440450844437 27.506906142311998 30.08998478341791 21.27166862342565 30-31 21.392312859914963 27.36193459071774 30.034935940125578 21.210816609241718 32-33 21.202523308517836 27.482371122687592 29.930172046877622 21.384933521916945 34-35 21.341251998609508 27.535555930539296 29.94652614238683 21.176665928464367 36-37 21.369744854753147 27.46575914977298 29.85547307858359 21.309022916890292 38-39 21.238746113573963 27.60889745126694 29.83623029547506 21.316126139684034 40-41 21.50755542893243 27.56630971656199 29.59633974177776 21.32979511272782 42-43 21.451713321378957 27.68686283657956 29.31980223747544 21.54162160456604 44-45 21.507664720032423 27.822079123261528 29.12674256331686 21.54351359338919 46-47 21.63160157237576 27.826803762994178 28.75121681831739 21.79037784631267 48-49 21.58841911597483 28.0181269853009 28.582496780337692 21.81095711838658 50-51 21.59225606761804 28.10829005520751 28.488248686775496 21.81120519039895 52-53 21.759930716108357 28.102847022545735 28.29593691330074 21.841285348045172 54-55 21.77447414221203 27.951499592364854 28.36270641261703 21.911319852806095 56-57 21.749987040900738 28.13304683342511 28.28222991793867 21.834736207735485 58-59 21.725281975822273 28.175668475040936 28.291095187525713 21.807954361611074 60-61 21.8403192719351 28.09929410943625 28.2616711960484 21.798715422580248 62-63 21.827918637306485 28.196044848018342 28.174301641559296 21.801734873115876 64-65 21.8316963027504 28.126484732839003 28.128575211640637 21.91324375276996 66-67 21.85381956714297 28.14937682379055 27.997895688245507 21.998907920820976 68-69 21.81002731826979 28.120557197129592 28.083984166553837 21.985431318046782 70-71 21.86001509050227 27.905693279862724 28.080814458495247 22.153477171139755 72-73 21.92230225240694 27.948481207875975 28.020239442359653 22.108977097357435 74-75 21.7732551150199 28.101527428177764 28.019460881102155 22.105756575700184 76-77 21.938954609607375 28.006275814619464 27.92609462654057 22.12867494923259 78-79 21.903403133930375 28.027315906552325 27.851984559884112 22.217296399633195 80-81 21.929626720813648 27.976981750750852 27.901326338532943 22.192065189902557 82-83 21.990161175759418 27.994002969037773 27.95797690320665 22.05785895199616 84-85 22.131392658996525 27.990455032238025 27.82409697035527 22.054055338410176 86-87 21.955984933977675 28.015961807261874 27.935335679090734 22.092717579669714 88-89 22.044487582036105 27.976350009436345 27.844130241427045 22.1350321671005 90-91 22.06644147303568 28.010234713860072 27.81043615367782 22.11288765942643 92-93 22.08334365763815 27.929446647317796 27.88853045111402 22.098679243930036 94-95 21.94681653298734 28.06098500621892 27.884716280905504 22.107482179888237 96-97 22.066429628256138 28.13265652500595 27.910832757069272 21.890081089668644 98-99 23.170396756698537 30.0528969747264 28.083227708299212 18.693478560275846 100 22.134656288673874 30.94148137907601 21.949421443002933 24.974440889247184 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3312.0 1 2831.0 2 3274.0 3 4478.5 4 5865.0 5 9297.5 6 12568.0 7 15319.5 8 17468.0 9 17754.0 10 16425.5 11 14723.5 12 15680.0 13 20210.5 14 31245.5 15 46898.5 16 59818.0 17 67654.0 18 69861.0 19 66885.0 20 61210.0 21 54875.0 22 50745.0 23 51727.0 24 57722.0 25 68814.0 26 84277.5 27 100484.0 28 117043.5 29 136502.0 30 155158.5 31 173264.0 32 193217.0 33 213756.5 34 233561.0 35 251458.5 36 272909.0 37 294587.0 38 309736.0 39 319058.5 40 330033.5 41 342480.5 42 351690.0 43 360760.5 44 368031.0 45 373737.0 46 376314.0 47 374793.5 48 372361.5 49 366418.0 50 355032.5 51 337982.0 52 317475.5 53 295303.5 54 271155.5 55 244465.0 56 217923.0 57 192383.5 58 166649.0 59 141971.5 60 116311.0 61 92867.0 62 73355.0 63 55879.0 64 41100.0 65 30151.0 66 22775.5 67 17353.5 68 12977.5 69 9422.5 70 6722.5 71 4793.0 72 3429.5 73 2422.0 74 1644.5 75 1124.0 76 767.5 77 501.0 78 328.5 79 222.0 80 139.5 81 85.5 82 68.5 83 54.5 84 41.5 85 30.5 86 22.5 87 18.0 88 13.0 89 8.5 90 5.0 91 4.0 92 3.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 4.5859886860303515E-4 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.006274974763080554 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 5.0348368754809314E-5 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0017572360389286356 36-37 0.03568974401809532 38-39 0.1172751141991714 40-41 0.15297490134579494 42-43 0.05427823499748031 44-45 0.001525831013693086 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.009358453484201291 64-65 0.07251953180214446 66-67 0.17322679328513169 68-69 0.19186894380060637 70-71 0.0755686095459196 72-73 0.005546409940718057 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 139.0 20-21 519.0 22-23 1247.0 24-25 2695.0 26-27 4286.0 28-29 7829.0 30-31 17467.0 32-33 21776.0 34-35 30217.0 36-37 43099.0 38-39 51544.0 40-41 55238.0 42-43 66860.0 44-45 77915.0 46-47 77687.0 48-49 66675.0 50-51 58977.0 52-53 54412.0 54-55 58269.0 56-57 59984.0 58-59 59010.0 60-61 59077.0 62-63 56280.0 64-65 61465.0 66-67 69183.0 68-69 63530.0 70-71 65116.0 72-73 61297.0 74-75 60197.0 76-77 55868.0 78-79 63293.0 80-81 63875.0 82-83 64444.0 84-85 68257.0 86-87 77736.0 88-89 84698.0 90-91 85492.0 92-93 92172.0 94-95 109462.0 96-97 298624.0 98-99 560634.0 100-101 6003730.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.31134379329971 #Duplication Level Percentage of deduplicated Percentage of total 1 88.4817858124255 73.7153647726409 2 7.886528731096084 13.140746129041636 3 1.999834288027184 4.998266456983845 4 0.7449272252232798 2.482435526462619 5 0.34710248788312015 1.4458787349770137 6 0.18566489046781753 0.9280794912065811 7 0.10518733286892658 0.6134308635940379 8 0.06332285853157635 0.42204099496789105 9 0.046827814679964136 0.35111593511022776 >10 0.13592614098589154 1.6947745821783538 >50 0.0023554032426519756 0.12407102005391633 >100 5.14098860489753E-4 0.07140518462288589 >500 2.291570756690422E-5 0.012390308160011273 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.2370676517221225E-5 0.0 1.1185338258610612E-5 0.0 3 0.0 2.2370676517221225E-5 0.0 3.355601477583184E-5 0.0 4 0.0 4.474135303444245E-5 0.0 7.829736781027429E-5 0.0 5 0.0 4.474135303444245E-5 0.0 7.829736781027429E-5 0.0 6 1.3422405910332736E-4 4.474135303444245E-5 0.0 7.829736781027429E-5 0.0 7 1.3422405910332736E-4 4.474135303444245E-5 0.0 8.94827060688849E-5 0.0 8 1.3422405910332736E-4 6.711202955166368E-5 0.0 8.94827060688849E-5 1.1185338258610612E-5 9 1.3422405910332736E-4 1.5659473562054858E-4 0.0 1.4540939736193797E-4 3.355601477583184E-5 10-11 1.3422405910332736E-4 1.5659473562054858E-4 0.0 1.6218740474985388E-4 3.355601477583184E-5 12-13 1.3422405910332736E-4 1.6218740474985388E-4 0.0 1.9015075039638044E-4 3.355601477583184E-5 14-15 1.3422405910332736E-4 2.0692875778429635E-4 0.0 1.9574341952568574E-4 3.9148683905137144E-5 16-17 1.789654121377698E-4 2.2370676517221227E-4 0.0 2.0692875778429635E-4 4.474135303444245E-5 18-19 1.789654121377698E-4 2.572627799480441E-4 0.0 2.2370676517221227E-4 4.474135303444245E-5 20-21 1.789654121377698E-4 2.796334564652653E-4 0.0 2.460774416894335E-4 4.474135303444245E-5 22-23 1.789654121377698E-4 3.2996747862901307E-4 0.0 2.572627799480441E-4 4.474135303444245E-5 24-25 1.789654121377698E-4 3.635234934048449E-4 0.0 2.796334564652653E-4 4.474135303444245E-5 26-27 1.8455808126707513E-4 3.970795081806768E-4 0.0 3.46745486016929E-4 4.474135303444245E-5 28-29 1.9015075039638044E-4 4.082648464392874E-4 0.0 5.704522511891413E-4 4.474135303444245E-5 30-31 1.9015075039638044E-4 4.8096954512025637E-4 0.0 0.0012639432232229993 5.033402216374776E-5 32-33 1.9015075039638044E-4 4.92154883378867E-4 0.0 0.002790741895523348 7.829736781027429E-5 34-35 1.9015075039638044E-4 5.816375894477519E-4 0.0 0.004602766693418268 8.94827060688849E-5 36-37 1.9015075039638044E-4 6.543422881287208E-4 0.0 0.007046763102924687 8.94827060688849E-5 38-39 1.9015075039638044E-4 6.711202955166368E-4 0.0 0.011224486942515752 1.1185338258610613E-4 40-41 1.9015075039638044E-4 7.158616485510792E-4 0.0 0.015318320745167235 1.1185338258610613E-4 42-43 1.9015075039638044E-4 7.382323250683005E-4 0.0 0.0192835231578447 1.1185338258610613E-4 44-45 1.9015075039638044E-4 8.165296928785748E-4 0.0 0.023958994549943935 1.1185338258610613E-4 46-47 1.9015075039638044E-4 8.612710459130172E-4 0.0 0.028779875339405108 1.1185338258610613E-4 48-49 1.9015075039638044E-4 8.612710459130172E-4 0.0 0.03333230801065963 1.1185338258610613E-4 50-51 2.1252142691360166E-4 9.395684137232915E-4 0.0 0.0378399993288797 1.1185338258610613E-4 52-53 2.2370676517221227E-4 9.395684137232915E-4 0.0 0.042302949294065334 1.1185338258610613E-4 54-55 2.2370676517221227E-4 9.451610828525969E-4 0.0 0.046497451141044324 1.1744605171541144E-4 56-57 2.2370676517221227E-4 9.675317593698181E-4 0.0 0.050602470281954415 1.2303872084471675E-4 58-59 2.2370676517221227E-4 0.0010010877741456498 0.0 0.05493119618803672 1.2303872084471675E-4 60-61 2.572627799480441E-4 0.0010290511197921764 0.0 0.05921518074108459 1.3422405910332736E-4 62-63 3.1318947124109716E-4 0.001040236458050787 0.0 0.06354949931629619 1.4540939736193797E-4 64-65 3.1878214037040246E-4 0.0011073484876024508 0.0 0.06772722315588726 1.4540939736193797E-4 66-67 3.355601477583184E-4 0.0011129411567317561 0.0 0.07232998984930553 1.4540939736193797E-4 68-69 3.46745486016929E-4 0.0011353118332489772 0.0 0.0770502025944392 1.4540939736193797E-4 70-71 3.523381551462343E-4 0.0011409045023782825 0.0 0.08114962906622 1.4540939736193797E-4 72-73 4.3622819208581393E-4 0.0011464971715075879 0.0 0.08414170705039833 2.0133608865499105E-4 74-75 4.3622819208581393E-4 0.0011744605171541145 0.0 0.08654655477599962 2.0133608865499105E-4 76-77 4.3622819208581393E-4 0.0012136092010592515 0.0 0.08914155325199728 2.0133608865499105E-4 78-79 4.3622819208581393E-4 0.001219201870188557 0.0 0.0907466492921079 2.0133608865499105E-4 80-81 4.3622819208581393E-4 0.001219201870188557 0.0 0.09121084082984024 2.0692875778429635E-4 82-83 4.3622819208581393E-4 0.0012471652158350835 0.0 0.09154080830846925 2.1252142691360166E-4 84-85 4.4182086121511923E-4 0.0012751285614816098 0.0 0.09174773706625355 2.1252142691360166E-4 86-87 4.4741353034442454E-4 0.001297499237998831 0.0 0.09188196112535688 2.1252142691360166E-4 88 4.5859886860303515E-4 0.0013534259292918842 0.0 0.09194348048577924 2.1252142691360166E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13690 0.0 51.324856 1 GTATCAA 24780 0.0 36.830326 1 TCAACGC 29905 0.0 29.843493 4 ATCAACG 30015 0.0 29.676886 3 CAACGCA 30520 0.0 29.284342 5 TATCAAC 30935 0.0 29.071972 2 AACGCAG 31455 0.0 28.4858 6 GTGGTAT 6340 0.0 25.13232 1 ACGCAGA 35635 0.0 25.07222 7 CGCAGAG 36290 0.0 24.667036 8 TGGTATC 6255 0.0 23.413965 2 GCAGAGT 41245 0.0 21.609913 9 GAGTACT 29140 0.0 20.576626 12-13 GTACATG 23910 0.0 19.75882 1 CAGAGTA 40800 0.0 19.492598 10-11 TACATGG 23870 0.0 19.360107 2 ACATGGG 23645 0.0 18.763287 3 AGAGTAC 38710 0.0 18.741861 10-11 GTACTTT 32095 0.0 18.640987 14-15 AGTACTT 31480 0.0 17.64859 12-13 >>END_MODULE