##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139156_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9350338 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.69903173553726 33.0 33.0 33.0 33.0 33.0 2 32.71103483104033 33.0 33.0 33.0 33.0 33.0 3 32.686468660277306 33.0 33.0 33.0 33.0 33.0 4 36.633800724636906 37.0 37.0 37.0 37.0 37.0 5 36.65923766606084 37.0 37.0 37.0 37.0 37.0 6 36.63125771496175 37.0 37.0 37.0 37.0 37.0 7 36.538692398071596 37.0 37.0 37.0 37.0 37.0 8 36.57366043879911 37.0 37.0 37.0 37.0 37.0 9 36.6243931502797 37.0 37.0 37.0 37.0 37.0 10-11 36.6062355179032 37.0 37.0 37.0 37.0 37.0 12-13 36.59315834358074 37.0 37.0 37.0 37.0 37.0 14-15 38.74433009801357 40.0 37.0 40.0 37.0 40.0 16-17 38.68759926111762 40.0 37.0 40.0 37.0 40.0 18-19 38.71143406794492 40.0 37.0 40.0 37.0 40.0 20-21 38.719480949357006 40.0 37.0 40.0 37.0 40.0 22-23 38.69955427251642 40.0 37.0 40.0 37.0 40.0 24-25 38.71894864493171 40.0 37.0 40.0 37.0 40.0 26-27 38.645892540846646 40.0 37.0 40.0 37.0 40.0 28-29 38.53828698184422 40.0 37.0 40.0 37.0 40.0 30-31 38.39592434921077 40.0 37.0 40.0 37.0 40.0 32-33 38.304013539230695 40.0 37.0 40.0 37.0 40.0 34-35 38.27096038193062 40.0 37.0 40.0 37.0 40.0 36-37 38.245628322065414 40.0 37.0 40.0 37.0 40.0 38-39 38.20101091483667 40.0 37.0 40.0 37.0 40.0 40-41 38.166361999808814 40.0 37.0 40.0 37.0 40.0 42-43 38.11722101404072 40.0 37.0 40.0 37.0 40.0 44-45 38.015315380735714 40.0 37.0 40.0 33.0 40.0 46-47 37.92930215727799 40.0 37.0 40.0 33.0 40.0 48-49 37.86347103790625 40.0 37.0 40.0 33.0 40.0 50-51 37.807268664880475 40.0 37.0 40.0 33.0 40.0 52-53 37.7354610450612 40.0 37.0 40.0 33.0 40.0 54-55 37.63337570565924 40.0 37.0 40.0 33.0 40.0 56-57 37.46319641902464 40.0 37.0 40.0 33.0 40.0 58-59 37.24902409902798 37.0 37.0 40.0 33.0 40.0 60-61 37.07236538874331 37.0 37.0 40.0 33.0 40.0 62-63 36.929266916526366 37.0 37.0 40.0 33.0 40.0 64-65 36.75433142132117 37.0 37.0 40.0 33.0 40.0 66-67 36.54693478360491 37.0 37.0 40.0 33.0 40.0 68-69 36.34550883519115 37.0 37.0 40.0 33.0 40.0 70-71 36.135799213799906 37.0 37.0 38.5 33.0 40.0 72-73 35.85608563290366 37.0 37.0 37.0 33.0 40.0 74-75 35.524668207231734 37.0 33.0 37.0 33.0 40.0 76-77 33.32904517881218 35.0 33.0 37.0 27.0 37.0 78-79 35.03931777552672 37.0 33.0 37.0 33.0 37.0 80-81 35.27680694273502 37.0 33.0 37.0 33.0 37.0 82-83 35.15374274978795 37.0 33.0 37.0 33.0 37.0 84-85 34.991584353477265 37.0 33.0 37.0 33.0 37.0 86-87 34.88232545210356 37.0 33.0 37.0 33.0 37.0 88-89 34.788806428221264 37.0 33.0 37.0 33.0 37.0 90-91 34.70558468050312 37.0 33.0 37.0 33.0 37.0 92-93 34.68759464731914 37.0 33.0 37.0 33.0 37.0 94-95 34.6545714545534 37.0 33.0 37.0 33.0 37.0 96-97 34.658907842691974 37.0 33.0 37.0 33.0 37.0 98-99 34.669672937413964 37.0 33.0 37.0 33.0 37.0 100 34.62534062189249 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 1.0 17 2.0 18 4.0 19 13.0 20 42.0 21 193.0 22 893.0 23 2664.0 24 6438.0 25 13508.0 26 24008.0 27 39137.0 28 59647.0 29 84580.0 30 116231.0 31 156019.0 32 210590.0 33 287401.0 34 403951.0 35 611021.0 36 1135403.0 37 2882726.0 38 3212062.0 39 103803.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.611854031372985 20.23105474903688 14.689030492801436 23.4680607267887 2 14.459241111305044 20.457677097985265 42.51908814943343 22.563993641276262 3 17.94383261867111 26.244259833173945 30.65092406285206 25.160983485302886 4 12.216264267666046 17.723530422108805 39.13017903737811 30.930026272847034 5 13.035731970330913 37.769297751589306 35.67076398735532 13.524206290724464 6 29.67465988930026 38.04777966315228 18.630449508884066 13.647110938663392 7 26.282686251555827 32.99730982986925 23.15104544883832 17.5689584697366 8 24.43512737186613 36.54006946059062 21.078564218748028 17.94623894879522 9 25.425604935350997 16.972851676591798 21.619795990262595 35.98174739779461 10-11 24.226466465704235 26.806913290193357 28.73252817170887 20.234092072393533 12-13 25.03258785163395 24.317476024566066 29.00483773509311 21.64509838870688 14-15 22.10179460892216 25.61806321867723 27.161285506470463 25.11885666593015 16-17 21.32502055005926 28.69528887618822 27.772477315793292 22.20721325795923 18-19 21.23892205821864 27.536453762420138 30.0802602002195 21.144363979141716 20-21 22.156571829177548 26.739305682522176 30.040050298833144 21.064072189467137 22-23 21.808551458939576 26.69460283084158 29.916089361997745 21.5807563482211 24-25 21.43054052857093 26.917282181703506 30.11812261834031 21.534054671385253 26-27 21.51758240047264 27.08479992226822 29.926343683498548 21.471273993760594 28-29 21.38931528698567 27.24168270299464 29.858504122189323 21.510497887830365 30-31 21.68752070828069 27.014565603592004 29.83961867119965 21.458295016927654 32-33 21.40319231567382 27.17358704654314 29.77045726061997 21.65276337716307 34-35 21.47767769589129 27.29552514334534 29.699962795845607 21.52683436491776 36-37 21.64876969058479 27.143533178634023 29.689453634867945 21.518243495913243 38-39 21.5316214834916 27.27007710563335 29.641517173823868 21.556784237051183 40-41 21.793427958001583 27.272610055661666 29.464815040336255 21.469146946000496 42-43 21.831054868326763 27.33459100103485 29.130185090780536 21.704169039857852 44-45 21.852096395054836 27.731841490602484 28.66097093248753 21.755091181855153 46-47 22.036680477937594 27.530196612927604 28.286505496986415 22.146617412148387 48-49 22.10269534950509 27.552699835077625 28.204304005588064 22.140300809829217 50-51 21.898935967822926 27.778626161292475 28.131773619580013 22.190664251304582 52-53 22.137256310352843 27.742406022462347 27.892700660439512 22.2276370067453 54-55 22.156259148849596 27.674683669780205 27.849908841829063 22.319148339541137 56-57 22.22664342502682 27.935990310221946 27.68141622551847 22.155950039232767 58-59 22.12053137225948 27.97318338659524 27.87251887547444 22.033766365670836 60-61 22.20677539785444 27.886866752594585 27.74576157628838 22.160596273262595 62-63 22.221672829603826 27.985067508631982 27.600725111093034 22.19253455067116 64-65 22.167234691735377 27.920798316031913 27.62886189284499 22.283105099387722 66-67 22.272376660862815 27.87544854005748 27.449405068762832 22.40276973031688 68-69 22.291947788556715 27.762998623710384 27.615965301946005 22.329088285786895 70-71 22.232026566105144 27.42493277204921 27.62775623803521 22.71528442381043 72-73 22.400368743567295 27.50236300264575 27.625709095311564 22.47155915847539 74-75 22.25551175577936 27.581014626692667 27.590415404405938 22.573058213122042 76-77 22.3356917035686 27.632874707191245 27.418868767571773 22.612564821668375 78-79 22.35786427028398 27.590495291091123 27.43862143973236 22.613018998892542 80-81 22.320061129444497 27.478643925578407 27.568432486809375 22.632862458167722 82-83 22.56167815151951 27.356201565542122 27.62897690027054 22.453143382667832 84-85 22.75889225175236 27.31362410516283 27.439242887061223 22.48824075602359 86-87 22.393492759154633 27.429234706132217 27.534767695916152 22.642504838797002 88-89 22.58992124655675 27.27009041529512 27.500594418071827 22.639393920076305 90-91 22.67262917082943 27.23685239829981 27.54507534396006 22.545443086910698 92-93 22.680422659980735 27.316670524972192 27.450453808615155 22.552453006431914 94-95 22.406685217811 27.315589958504866 27.62934680343687 22.648378020247268 96-97 22.57589145185374 27.349297428047155 27.685779260133543 22.389031859965563 98-99 23.749025182067385 29.276275232941952 27.72552894050701 19.249170644483655 100 22.77065379969835 30.153416133315282 21.449289540054632 25.62664052693173 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1475.0 1 1605.5 2 3124.0 3 4857.0 4 6947.5 5 12419.0 6 17058.5 7 19549.0 8 20529.0 9 19214.0 10 16975.0 11 15212.5 12 17008.5 13 23309.0 14 37505.5 15 57407.0 16 74004.0 17 83565.5 18 84889.0 19 79101.0 20 69634.5 21 59583.5 22 52588.5 23 51552.5 24 56337.5 25 67945.0 26 85450.0 27 102455.5 28 116199.5 29 132465.5 30 147975.5 31 162127.5 32 183158.0 33 205476.0 34 226645.0 35 247891.0 36 273685.0 37 297452.5 38 307177.5 39 314019.5 40 328984.5 41 340714.5 42 348496.0 43 359585.0 44 371020.0 45 382528.5 46 390242.5 47 397033.0 48 399326.0 49 390776.0 50 378921.0 51 366019.5 52 351451.5 53 338183.0 54 319797.5 55 292106.0 56 260958.5 57 227607.5 58 194615.0 59 164421.5 60 131626.0 61 100873.5 62 76837.5 63 57515.0 64 42598.5 65 30684.0 66 22106.0 67 16519.5 68 12066.0 69 8639.0 70 6399.0 71 4653.0 72 3301.0 73 2199.5 74 1502.5 75 1032.5 76 702.0 77 462.5 78 306.5 79 218.5 80 157.5 81 115.0 82 90.0 83 68.5 84 50.0 85 37.0 86 28.5 87 24.5 88 17.0 89 9.0 90 8.0 91 7.0 92 3.5 93 2.0 94 1.0 95 0.0 96 0.0 97 0.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 3.6362321875423113E-4 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.006539870537300363 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 2.1394950791613178E-5 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0018636741733056468 36-37 0.037278523975841873 38-39 0.11723604343091387 40-41 0.15241772756733177 42-43 0.055398394522895605 44-45 0.0017496067952513235 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.009359268629312231 64-65 0.07237033458908877 66-67 0.17319792075515597 68-69 0.19203468024510817 70-71 0.07594941234126791 72-73 0.005564456542123465 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 109.0 20-21 562.0 22-23 1185.0 24-25 2583.0 26-27 4749.0 28-29 9021.0 30-31 19191.0 32-33 23287.0 34-35 30010.0 36-37 39054.0 38-39 41163.0 40-41 58843.0 42-43 70437.0 44-45 79799.0 46-47 89283.0 48-49 73827.0 50-51 63424.0 52-53 62121.0 54-55 63747.0 56-57 64313.0 58-59 66801.0 60-61 60064.0 62-63 53666.0 64-65 70847.0 66-67 89339.0 68-69 80254.0 70-71 80345.0 72-73 77037.0 74-75 75649.0 76-77 70159.0 78-79 78563.0 80-81 83909.0 82-83 80949.0 84-85 91261.0 86-87 96664.0 88-89 104421.0 90-91 103440.0 92-93 108890.0 94-95 122556.0 96-97 309835.0 98-99 576999.0 100-101 6071982.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 76.21081104676232 #Duplication Level Percentage of deduplicated Percentage of total 1 85.60411449748305 65.23958994793088 2 8.450698033570683 12.880691020994023 3 2.8087100422055387 6.421622109350104 4 1.273433867152103 3.88197711320307 5 0.6377213104138256 2.430062914422086 6 0.377323156870432 1.725366228709221 7 0.22698739680937804 1.210922552576518 8 0.1633894931961307 0.9961636634397258 9 0.10231053264876512 0.7017451804609781 >10 0.3498739017540811 3.957256843693501 >50 0.003718215273313547 0.18550518887168035 >100 0.0014732867951338681 0.1762079174038846 >500 1.8469938400533193E-4 0.11342981468469722 >1k 6.156644353670714E-5 0.0794595042595925 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 5.347400275797517E-5 2 0.0 0.0 0.0 0.0 5.347400275797517E-5 3 0.0 0.0 0.0 0.0 5.347400275797517E-5 4 0.0 0.0 0.0 0.0 5.347400275797517E-5 5 0.0 0.0 0.0 0.0 6.41688033095702E-5 6 0.0 0.0 0.0 0.0 6.41688033095702E-5 7 0.0 0.0 0.0 0.0 6.41688033095702E-5 8 1.0694800551595033E-5 0.0 0.0 0.0 6.41688033095702E-5 9 1.0694800551595033E-5 0.0 0.0 1.0694800551595033E-5 6.41688033095702E-5 10-11 5.882140303377268E-5 0.0 0.0 1.0694800551595033E-5 9.090580468855778E-5 12-13 9.62532049643553E-5 0.0 0.0 1.0694800551595033E-5 3.6362321875423113E-4 14-15 9.62532049643553E-5 0.0 0.0 1.0694800551595033E-5 4.0640242096061125E-4 16-17 1.2299020634334287E-4 0.0 0.0 2.6737001378987583E-5 4.6522382399438397E-4 18-19 1.3903240717073542E-4 0.0 0.0 3.20844016547851E-5 4.812660248217765E-4 20-21 1.3903240717073542E-4 0.0 0.0 3.20844016547851E-5 5.347400275797517E-4 22-23 3.3688621737524356E-4 0.0 0.0 5.347400275797517E-5 5.561296286829417E-4 24-25 4.117498212364088E-4 0.0 0.0 1.283376066191404E-4 5.668244292345368E-4 26-27 4.812660248217765E-4 0.0 0.0 2.2993821185929322E-4 6.149510317167144E-4 28-29 5.133504264765616E-4 0.0 0.0 5.293926273039541E-4 6.30993232544107E-4 30-31 5.668244292345368E-4 0.0 0.0 0.0014758824761201147 6.30993232544107E-4 32-33 5.775192297861318E-4 0.0 0.0 0.003240524567133295 6.844672353020821E-4 34-35 5.828666300619293E-4 0.0 0.0 0.0052939262730395415 6.951620358536772E-4 36-37 6.470354333714995E-4 0.0 0.0 0.008106658818109035 7.005094361294747E-4 38-39 6.52382833647297E-4 0.0 0.0 0.011935397415580057 7.165516369568672E-4 40-41 6.791198350262846E-4 0.0 0.0 0.015988726824634578 7.165516369568672E-4 42-43 7.112042366810697E-4 0.0 0.0 0.020587491061820437 7.272464375084623E-4 44-45 7.165516369568672E-4 0.0 0.0 0.025458972713071976 7.593308391632474E-4 46-47 7.272464375084623E-4 0.0 0.0 0.030747551585835718 7.967626410938299E-4 48-49 7.379412380600573E-4 0.0 0.0 0.03581153964701597 8.716262449549952E-4 50-51 7.967626410938299E-4 0.0 0.0 0.04028731367785849 9.197528474371729E-4 52-53 8.234996424728176E-4 0.0 0.0 0.04460801310070288 9.678794499193505E-4 54-55 8.555840441276027E-4 0.0 0.0 0.04842605689762231 0.0010106586521257306 56-57 8.930158460581852E-4 0.0 0.0 0.05235104870005769 0.0010641326548837056 58-59 0.001016006052401528 0.0 0.0 0.05607818669228856 0.0010801748557110983 60-61 0.0010641326548837058 0.0 0.0 0.05958073387293593 0.0010801748557110983 62-63 0.0010748274554353008 0.0 0.0 0.06255388842627935 0.001171080660399656 64-65 0.001096217056538491 0.0 0.0 0.06558586438265654 0.0012192072628818339 66-67 0.0011122592573658834 0.0 0.0 0.07053755703804504 0.0012405968639850238 68-69 0.0011122592573658834 0.0 0.0 0.0753823016879176 0.001251291664536619 70-71 0.0011122592573658834 0.0 0.0 0.07995967632400028 0.001294070866742999 72-73 0.0011176066576416809 0.0 0.0 0.08404509013470957 0.0013528922697767717 74-75 0.0011229540579174785 0.0 0.0 0.08694338108419182 0.0014010188722589495 76-77 0.0011229540579174785 0.0 0.0 0.08970798702677914 0.001417061073086342 78-79 0.0011229540579174785 0.0 0.0 0.09152610312055029 0.0014758824761201147 80-81 0.0011550384595722636 0.0 0.0 0.09218383335447339 0.0015186616783264947 82-83 0.0011764280606754536 0.0 0.0 0.09266509937929517 0.001604220082739255 84-85 0.0011764280606754536 0.0 0.0 0.09288969019087866 0.0016309570841182425 86-87 0.0011764280606754536 0.0 0.0 0.09306080699970418 0.001716515488531003 88 0.0011764280606754536 0.0 0.0 0.09308754400108317 0.0017967264926679657 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14795 0.0 51.89323 1 GTATCAA 27925 0.0 39.38363 1 ATCAACG 35990 0.0 30.21427 3 TATCAAC 36205 0.0 30.188084 2 TCAACGC 36320 0.0 29.974997 4 CAACGCA 36445 0.0 29.883896 5 AACGCAG 37605 0.0 28.978065 6 ACGCAGA 41305 0.0 26.320843 7 CGCAGAG 42135 0.0 25.842882 8 GCAGAGT 47870 0.0 22.577389 9 TACATGG 29085 0.0 21.980484 2 GTACATG 30830 0.0 21.428509 1 ACATGGG 29340 0.0 21.062162 3 GAGTACT 32725 0.0 20.44403 12-13 AGAGTAC 44660 0.0 19.903973 10-11 GTGGTAT 7720 0.0 19.845938 1 CAGAGTA 46600 0.0 19.76692 10-11 CTTATAC 5450 0.0 19.028488 1 TGGTATC 7570 0.0 18.829773 2 CATGGGG 21125 0.0 18.7072 4 >>END_MODULE