##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139155_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10409735 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.67157953588636 33.0 33.0 33.0 33.0 33.0 2 32.690155224892855 33.0 33.0 33.0 33.0 33.0 3 32.66354590198502 33.0 33.0 33.0 33.0 33.0 4 36.60634732776579 37.0 37.0 37.0 37.0 37.0 5 36.633284997168516 37.0 37.0 37.0 37.0 37.0 6 36.603103345089956 37.0 37.0 37.0 37.0 37.0 7 36.51294177997807 37.0 37.0 37.0 37.0 37.0 8 36.545076027391666 37.0 37.0 37.0 37.0 37.0 9 36.59927241183373 37.0 37.0 37.0 37.0 37.0 10-11 36.58126911972303 37.0 37.0 37.0 37.0 37.0 12-13 36.56790292932529 37.0 37.0 37.0 37.0 37.0 14-15 38.69512350698649 40.0 37.0 40.0 37.0 40.0 16-17 38.63438901182403 40.0 37.0 40.0 37.0 40.0 18-19 38.66238866791518 40.0 37.0 40.0 37.0 40.0 20-21 38.67534481706869 40.0 37.0 40.0 37.0 40.0 22-23 38.65545174648455 40.0 37.0 40.0 37.0 40.0 24-25 38.67485616422164 40.0 37.0 40.0 37.0 40.0 26-27 38.601610081528804 40.0 37.0 40.0 37.0 40.0 28-29 38.493831349504205 40.0 37.0 40.0 37.0 40.0 30-31 38.35547770860403 40.0 37.0 40.0 37.0 40.0 32-33 38.26088614218733 40.0 37.0 40.0 37.0 40.0 34-35 38.22343742824141 40.0 37.0 40.0 37.0 40.0 36-37 38.21112286887087 40.0 37.0 40.0 37.0 40.0 38-39 38.16985911386651 40.0 37.0 40.0 37.0 40.0 40-41 38.14856264168383 40.0 37.0 40.0 37.0 40.0 42-43 38.10605804797522 40.0 37.0 40.0 37.0 40.0 44-45 38.0128245434958 40.0 37.0 40.0 33.0 40.0 46-47 37.93608502377337 40.0 37.0 40.0 33.0 40.0 48-49 37.881599922478756 40.0 37.0 40.0 33.0 40.0 50-51 37.83074124350379 40.0 37.0 40.0 33.0 40.0 52-53 37.77244227311785 40.0 37.0 40.0 33.0 40.0 54-55 37.67172913611897 40.0 37.0 40.0 33.0 40.0 56-57 37.51039389166034 40.0 37.0 40.0 33.0 40.0 58-59 37.31125134693515 38.5 37.0 40.0 33.0 40.0 60-61 37.15038337031532 37.0 37.0 40.0 33.0 40.0 62-63 37.02225864724377 37.0 37.0 40.0 33.0 40.0 64-65 36.86217080900939 37.0 37.0 40.0 33.0 40.0 66-67 36.66692266545574 37.0 37.0 40.0 33.0 40.0 68-69 36.47685260328073 37.0 37.0 40.0 33.0 40.0 70-71 36.271463637994216 37.0 37.0 40.0 33.0 40.0 72-73 35.99072109835942 37.0 37.0 37.0 33.0 40.0 74-75 35.65811109825793 37.0 35.0 37.0 33.0 40.0 76-77 33.478386456804515 35.0 33.0 37.0 27.0 37.0 78-79 35.16477339869213 37.0 33.0 37.0 33.0 37.0 80-81 35.37722949278215 37.0 33.0 37.0 33.0 37.0 82-83 35.242693834275926 37.0 33.0 37.0 33.0 37.0 84-85 35.07570014580586 37.0 33.0 37.0 33.0 37.0 86-87 34.95934538663351 37.0 33.0 37.0 33.0 37.0 88-89 34.865022984851294 37.0 33.0 37.0 33.0 37.0 90-91 34.778644345148706 37.0 33.0 37.0 33.0 37.0 92-93 34.75807533333479 37.0 33.0 37.0 33.0 37.0 94-95 34.72043739828852 37.0 33.0 37.0 33.0 37.0 96-97 34.72076386699519 37.0 33.0 37.0 33.0 37.0 98-99 34.732946388775346 37.0 33.0 37.0 33.0 37.0 100 34.6892013286657 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 1.0 19 4.0 20 43.0 21 262.0 22 1070.0 23 3222.0 24 7574.0 25 15279.0 26 26962.0 27 44202.0 28 66055.0 29 94355.0 30 129749.0 31 174753.0 32 234331.0 33 319111.0 34 448634.0 35 668500.0 36 1218244.0 37 3086506.0 38 3746343.0 39 124533.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.78556666289456 20.90452071109598 14.854375721800384 23.45553690420908 2 13.995899206239724 20.69760565442282 43.36016858135668 21.946326557980775 3 17.682699673209708 26.796102570920638 30.876946519478786 24.64425123639086 4 11.801723271699354 18.338067043788055 39.73174530684454 30.128464377668056 5 12.735464710241395 38.012863729274926 36.05778015077043 13.193891409713254 6 28.64095278515282 38.784699013442605 19.108221209110628 13.466126992293944 7 25.583679659826082 33.185257183324765 23.571783870750203 17.659279286098954 8 23.755890400273437 37.21060499720742 21.481644007426127 17.551860595093018 9 24.910319514408343 17.17284034347083 21.888657289417772 36.028182852703054 10-11 23.68206412949341 27.25717452255867 29.08246603215481 19.978295315793115 12-13 24.656195843405897 24.66879065152049 29.324205443896854 21.35080806117676 14-15 21.721191749838013 25.99622853031321 27.371878342724383 24.910701377124393 16-17 20.89593058805051 29.221070469132982 28.013854339231496 21.86914460358501 18-19 20.747190010120335 28.000025937259693 30.3326357491329 20.92014830348707 20-21 21.654228818680952 27.195825425085623 30.20733674682076 20.94260900941266 22-23 21.35235932320403 27.286801492912787 30.10596487321112 21.25487431067206 24-25 21.10960183071287 27.360756391782203 30.405602678596093 21.12403909890884 26-27 21.058287215072195 27.536110271665205 30.261730263345076 21.14387224991753 28-29 20.774933852446956 27.664022367538983 30.38040493555483 21.180638844459235 30-31 21.251106197407015 27.41056167933299 30.038140786081684 21.300191337178312 32-33 21.235242586924503 27.592191835943442 30.141219735042355 21.031345842089692 34-35 21.187522484812007 27.87448015598831 30.081214051536765 20.856783307662923 36-37 21.148646610909026 27.595916338246585 29.953327217309837 21.30210983353455 38-39 21.11341238620602 27.62820958941969 30.059556329028652 21.198821695345647 40-41 21.340937125927834 27.57477348328306 29.89012201308416 21.19416737770495 42-43 21.397063941197153 27.654521690820843 29.697863738347852 21.25055062963415 44-45 21.293745037412215 28.00683121814349 29.31161734749974 21.387806396944555 46-47 21.584633495775606 27.775479844671324 28.745850732764154 21.894035926788916 48-49 21.64579093462324 27.86592237472103 28.709047352190314 21.77923933846542 50-51 21.409330035922434 28.057594735716773 28.678933680063718 21.854141548297076 52-53 21.50395022454544 28.160335903476092 28.631356269457864 21.70435760252061 54-55 21.570274499434454 28.161334641228585 28.38095246096188 21.887438398375078 56-57 21.752162382725803 28.299786950761995 28.176290361293372 21.77176030521883 58-59 21.489999858231798 28.50578186902383 28.48503021401381 21.519188058730553 60-61 21.750365325319517 28.64466453287264 28.02980218559515 21.575167956212702 62-63 21.705502525291926 28.68775166582412 27.899301045109798 21.707444763774152 64-65 21.623694617480858 28.651686787267305 27.94335915411373 21.781259441138108 66-67 21.728336296153987 28.482406404626765 27.874556058317506 21.91470124090174 68-69 21.765134993178194 28.288026996377507 28.090926252685477 21.85591175775882 70-71 21.818168356346987 27.895310727754296 28.10516312883175 22.18135778706696 72-73 21.89641684444782 27.980428309019366 28.14104907564335 21.98210577088946 74-75 21.744084456593722 28.17998192075945 28.06027759682226 22.01565602582457 76-77 21.78935957186637 28.084173725192723 27.95902233923824 22.167444363702664 78-79 21.884674649062045 28.004093780773815 27.947062869629598 22.164168700534542 80-81 21.79375176428944 27.94644028001607 28.110668182150846 22.14913977354365 82-83 22.019880216307477 27.852615999881646 28.13244138150083 21.99506240231005 84-85 22.24978711960131 27.842557254764255 27.910539719075445 21.99711590655899 86-87 21.782142842793064 27.95597077039716 28.078283114721213 22.18360327208856 88-89 22.08037576934968 27.740900705945243 28.03251823165317 22.14620529305191 90-91 22.154042275067734 27.743260122480002 28.054843193778883 22.047854408673384 92-93 22.133615130683005 27.72841728889614 28.02097916333295 22.116988417087907 94-95 21.97959880956416 27.742041351720193 28.088963919608023 22.18939591910763 96-97 22.006539724980673 27.907486276771454 28.152106785199987 21.933867213047886 98-99 23.137434390315057 29.756235112876112 28.35838721398836 18.74794328282047 100 22.22607650601587 30.541208211748888 22.10014461151399 25.13257067072125 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1517.0 1 1597.5 2 3218.5 3 5121.0 4 7357.0 5 13129.0 6 17979.5 7 20521.0 8 21483.5 9 19987.0 10 17726.0 11 15914.5 12 17563.5 13 24205.0 14 39645.5 15 61691.0 16 80350.0 17 91087.0 18 93170.0 19 87985.0 20 79030.0 21 69437.5 22 63335.0 23 65176.0 24 74219.0 25 89583.0 26 111060.5 27 133048.0 28 150212.0 29 168997.0 30 189338.5 31 209706.0 32 233898.5 33 257735.0 34 282981.5 35 307766.0 36 333252.0 37 359077.0 38 373105.0 39 381315.0 40 391231.0 41 399240.5 42 406793.0 43 416674.0 44 425671.0 45 434472.5 46 443906.5 47 452510.0 48 461158.5 49 453056.0 50 433900.0 51 417772.5 52 393455.0 53 360141.5 54 324664.0 55 290014.5 56 254852.0 57 220629.5 58 187444.0 59 156948.0 60 125732.0 61 94879.0 62 71164.5 63 51989.5 64 36651.0 65 24937.5 66 17283.5 67 12879.5 68 9485.5 69 6814.0 70 5118.0 71 3738.0 72 2669.5 73 1860.0 74 1317.5 75 898.5 76 606.0 77 423.0 78 272.5 79 176.0 80 125.5 81 92.5 82 63.5 83 34.5 84 20.5 85 14.5 86 11.5 87 12.0 88 9.5 89 6.5 90 3.5 91 1.0 92 2.0 93 2.5 94 2.0 95 2.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 9.606392477810433E-6 2 4.130748765458487E-4 3 9.606392477810433E-6 4 9.606392477810433E-6 5 9.606392477810433E-6 6 9.606392477810433E-6 7 9.606392477810433E-6 8 9.606392477810433E-6 9 9.606392477810433E-6 10-11 4.803196238905217E-6 12-13 0.006570772454822337 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 9.60882982277138E-6 26-27 0.0 28-29 0.0 30-31 9.63114589303139E-6 32-33 9.65420100143027E-6 34-35 0.0016752871325940379 36-37 0.03672642624642649 38-39 0.11733119448292433 40-41 0.15341170851243352 42-43 0.054651792560921335 44-45 0.0015241307754341204 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.00892477127000477 64-65 0.07311833384090057 66-67 0.175584969351611 68-69 0.1946717818882729 70-71 0.0774599289560819 72-73 0.005292068453508776 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 130.0 20-21 571.0 22-23 1367.0 24-25 2914.0 26-27 5350.0 28-29 10776.0 30-31 23654.0 32-33 29430.0 34-35 39825.0 36-37 57192.0 38-39 70593.0 40-41 76461.0 42-43 91985.0 44-45 107633.0 46-47 103934.0 48-49 90793.0 50-51 79739.0 52-53 74289.0 54-55 85306.0 56-57 89796.0 58-59 87025.0 60-61 92832.0 62-63 91106.0 64-65 94358.0 66-67 105221.0 68-69 89837.0 70-71 85716.0 72-73 84287.0 74-75 83736.0 76-77 79580.0 78-79 83627.0 80-81 86974.0 82-83 94043.0 84-85 96401.0 86-87 102060.0 88-89 111014.0 90-91 110711.0 92-93 116651.0 94-95 132125.0 96-97 329382.0 98-99 621241.0 100-101 6590070.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 78.13107999122789 #Duplication Level Percentage of deduplicated Percentage of total 1 86.15589209873373 67.31452897281764 2 8.481741361123389 13.253752255016751 3 2.590420172711805 6.071769771751092 4 1.1508765125559979 3.596768994501523 5 0.5518167621455858 2.155701979184857 6 0.3573027622996446 1.674987042139213 7 0.20933998229900938 1.1449171231656292 8 0.1387901586481359 0.8675059989866172 9 0.09087582939185257 0.6390204025935611 >10 0.26993992048063975 3.001444822895711 >50 0.0021975563173625558 0.1129688335152619 >100 6.836349049002295E-4 0.09131163845816254 >500 1.2324838792663828E-4 0.07532216497402049 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 9.606392477810435E-6 0.0 2 0.0 0.0 0.0 9.606392477810435E-6 0.0 3 0.0 0.0 0.0 3.842556991124174E-5 0.0 4 0.0 0.0 0.0 4.803196238905217E-5 0.0 5 0.0 0.0 0.0 5.7638354866862606E-5 0.0 6 0.0 0.0 0.0 6.724474734467304E-5 0.0 7 0.0 0.0 0.0 6.724474734467304E-5 0.0 8 0.0 0.0 0.0 6.724474734467304E-5 0.0 9 0.0 0.0 0.0 1.5370227964496696E-4 0.0 10-11 0.0 0.0 0.0 2.545694006619765E-4 0.0 12-13 0.0 0.0 0.0 3.3622373672336517E-4 0.0 14-15 0.0 0.0 0.0 3.3622373672336517E-4 0.0 16-17 0.0 0.0 0.0 3.698461103957017E-4 0.0 18-19 0.0 0.0 0.0 4.3709085774037477E-4 0.0 20-21 0.0 0.0 0.0 5.091388013239531E-4 0.0 22-23 0.0 0.0 0.0 5.331547825184791E-4 0.0 24-25 0.0 0.0 0.0 5.427611749962895E-4 0.0 26-27 0.0 0.0 0.0 5.715803524297208E-4 0.0 28-29 9.606392477810435E-6 0.0 0.0 7.877241831804557E-4 0.0 30-31 9.606392477810435E-6 0.0 0.0 0.0013641077318490816 0.0 32-33 9.606392477810435E-6 0.0 0.0 0.0028002634072817416 0.0 34-35 9.606392477810435E-6 0.0 0.0 0.004543823642004336 0.0 36-37 9.606392477810435E-6 0.0 0.0 0.007031879293757238 0.0 38-39 9.606392477810435E-6 0.0 0.0 0.011191447236649155 0.0 40-41 9.606392477810435E-6 0.0 0.0 0.015749680467370207 0.0 42-43 9.606392477810435E-6 0.0 0.0 0.020221456165790963 0.0 44-45 9.606392477810435E-6 0.0 0.0 0.02543772728124203 4.8031962389052175E-6 46-47 9.606392477810435E-6 0.0 0.0 0.03142250979491793 9.606392477810435E-6 48-49 9.606392477810435E-6 0.0 0.0 0.03738807952363821 9.606392477810435E-6 50-51 9.606392477810435E-6 0.0 0.0 0.043161521402802286 9.606392477810435E-6 52-53 9.606392477810435E-6 0.0 0.0 0.04869000027378219 9.606392477810435E-6 54-55 9.606392477810435E-6 0.0 0.0 0.05393028737042778 9.606392477810435E-6 56-57 9.606392477810435E-6 0.0 0.0 0.05912254250468432 9.606392477810435E-6 58-59 9.606392477810435E-6 0.0 0.0 0.06428597846150742 9.606392477810435E-6 60-61 9.606392477810435E-6 0.0 0.0 0.06928130254996885 9.606392477810435E-6 62-63 9.606392477810435E-6 0.0 0.0 0.07432465860081933 9.606392477810435E-6 64-65 9.606392477810435E-6 0.0 0.0 0.07934399867047529 9.606392477810435E-6 66-67 9.606392477810435E-6 0.0 0.0 0.08475720083172146 9.606392477810435E-6 68-69 9.606392477810435E-6 0.0 0.0 0.08987740802239443 9.606392477810435E-6 70-71 9.606392477810435E-6 0.0 0.0 0.09393130564803043 9.606392477810435E-6 72-73 9.606392477810435E-6 0.0 0.0 0.09746165488362576 9.606392477810435E-6 74-75 9.606392477810435E-6 0.0 0.0 0.10035798221568559 9.606392477810435E-6 76-77 9.606392477810435E-6 0.0 0.0 0.10326391594022327 9.606392477810435E-6 78-79 9.606392477810435E-6 0.0 0.0 0.1051467688658741 9.606392477810435E-6 80-81 9.606392477810435E-6 0.0 0.0 0.10573756200325946 9.606392477810435E-6 82-83 9.606392477810435E-6 0.0 0.0 0.10626591358953902 9.606392477810435E-6 84-85 9.606392477810435E-6 0.0 0.0 0.10653489257891771 9.606392477810435E-6 86-87 9.606392477810435E-6 0.0 0.0 0.10665977568112925 9.606392477810435E-6 88 9.606392477810435E-6 0.0 0.0 0.10667898846608487 9.606392477810435E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15455 0.0 50.857334 1 GTATCAA 28985 0.0 39.098602 1 CTTATAC 8920 0.0 32.884266 1 ATCAACG 36340 0.0 30.53583 3 TCAACGC 37225 0.0 29.866468 4 CAACGCA 37395 0.0 29.70815 5 TATCAAC 37990 0.0 29.486923 2 AACGCAG 38930 0.0 28.57199 6 TATACAC 13140 0.0 26.52491 3 ACGCAGA 43185 0.0 25.688608 7 CGCAGAG 44040 0.0 25.228167 8 GTGGTAT 7175 0.0 22.849226 1 GCAGAGT 50280 0.0 22.038544 9 TTATACA 14500 0.0 21.973415 2 TGGTATC 7250 0.0 20.927061 2 TACATGG 31605 0.0 20.428982 2 GTACATG 32425 0.0 20.328276 1 ACATGGG 31035 0.0 20.24742 3 ACACATC 15055 0.0 20.241516 6 AGAGTAC 47425 0.0 19.521421 10-11 >>END_MODULE