##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139154_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8273599 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.71123521940089 33.0 33.0 33.0 33.0 33.0 2 32.72661776332162 33.0 33.0 33.0 33.0 33.0 3 32.700037674052126 33.0 33.0 33.0 33.0 33.0 4 36.64788346643341 37.0 37.0 37.0 37.0 37.0 5 36.67410712073428 37.0 37.0 37.0 37.0 37.0 6 36.64220165855271 37.0 37.0 37.0 37.0 37.0 7 36.54812760444397 37.0 37.0 37.0 37.0 37.0 8 36.583160000865405 37.0 37.0 37.0 37.0 37.0 9 36.635049994567055 37.0 37.0 37.0 37.0 37.0 10-11 36.61812072352068 37.0 37.0 37.0 37.0 37.0 12-13 36.604072907086746 37.0 37.0 37.0 37.0 37.0 14-15 38.7762329307959 40.0 37.0 40.0 37.0 40.0 16-17 38.72101409555866 40.0 37.0 40.0 37.0 40.0 18-19 38.744543275544295 40.0 37.0 40.0 37.0 40.0 20-21 38.754597455040724 40.0 37.0 40.0 37.0 40.0 22-23 38.732358581269594 40.0 37.0 40.0 37.0 40.0 24-25 38.752891554706274 40.0 37.0 40.0 37.0 40.0 26-27 38.68499808231093 40.0 37.0 40.0 37.0 40.0 28-29 38.58340586470298 40.0 37.0 40.0 37.0 40.0 30-31 38.45189589105038 40.0 37.0 40.0 37.0 40.0 32-33 38.360769654082205 40.0 37.0 40.0 37.0 40.0 34-35 38.33013595317209 40.0 37.0 40.0 37.0 40.0 36-37 38.3042845694644 40.0 37.0 40.0 37.0 40.0 38-39 38.26309390644009 40.0 37.0 40.0 37.0 40.0 40-41 38.22519101862774 40.0 37.0 40.0 37.0 40.0 42-43 38.175453993794754 40.0 37.0 40.0 37.0 40.0 44-45 38.07950629268126 40.0 37.0 40.0 35.0 40.0 46-47 37.994080319605374 40.0 37.0 40.0 33.0 40.0 48-49 37.931873113158844 40.0 37.0 40.0 33.0 40.0 50-51 37.888504537760575 40.0 37.0 40.0 33.0 40.0 52-53 37.82368822957638 40.0 37.0 40.0 33.0 40.0 54-55 37.72936143831333 40.0 37.0 40.0 33.0 40.0 56-57 37.57376253294786 40.0 37.0 40.0 33.0 40.0 58-59 37.37508923317499 40.0 37.0 40.0 33.0 40.0 60-61 37.21608442865474 37.0 37.0 40.0 33.0 40.0 62-63 37.07998067853901 37.0 37.0 40.0 33.0 40.0 64-65 36.908932265713744 37.0 37.0 40.0 33.0 40.0 66-67 36.70345209952753 37.0 37.0 40.0 33.0 40.0 68-69 36.50620117568025 37.0 37.0 40.0 33.0 40.0 70-71 36.28619368401496 37.0 37.0 40.0 33.0 40.0 72-73 35.997305133193606 37.0 37.0 37.0 33.0 40.0 74-75 35.663114275053005 37.0 35.0 37.0 33.0 40.0 76-77 33.53877012434631 35.0 33.0 37.0 27.0 37.0 78-79 35.17210157706623 37.0 33.0 37.0 33.0 37.0 80-81 35.37024725182109 37.0 33.0 37.0 33.0 37.0 82-83 35.23111039557474 37.0 33.0 37.0 33.0 37.0 84-85 35.05441768730152 37.0 33.0 37.0 33.0 37.0 86-87 34.93276456404619 37.0 33.0 37.0 33.0 37.0 88-89 34.826269275113894 37.0 33.0 37.0 33.0 37.0 90-91 34.73445547264707 37.0 33.0 37.0 33.0 37.0 92-93 34.71318776494611 37.0 33.0 37.0 33.0 37.0 94-95 34.673610943508606 37.0 33.0 37.0 33.0 37.0 96-97 34.674697473833916 37.0 33.0 37.0 33.0 37.0 98-99 34.70354519603248 37.0 33.0 37.0 33.0 37.0 100 34.68113010569242 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 3.0 20 29.0 21 155.0 22 749.0 23 2232.0 24 5517.0 25 11614.0 26 20700.0 27 33547.0 28 51348.0 29 73432.0 30 102244.0 31 137640.0 32 184210.0 33 252291.0 34 356237.0 35 532985.0 36 965281.0 37 2455899.0 38 3006235.0 39 81249.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.545027744274286 20.16106896164535 14.87753999196722 23.416363302113144 2 14.168659763709822 20.528778677511824 43.13522504712605 22.167336511652305 3 18.474233522799448 25.860595854355523 30.2595883605188 25.405582262326227 4 12.158481454080624 17.92148737206142 39.293069436891976 30.62696173696598 5 13.209390496203646 37.55243637019392 35.65697346463129 13.581199668971145 6 29.58112908300245 37.96732232248626 18.932087474870368 13.519461119640921 7 26.37580090599025 32.75660326298144 23.132375644504886 17.735220186523424 8 23.68892908636254 37.595138463926034 21.03384512592404 17.68208732378739 9 24.95772396027412 17.743535793794212 21.78808762667855 35.51065261925312 10-11 24.00613082650005 27.179145375549385 28.730272037598148 20.08445176035242 12-13 24.87089389148366 24.581429559146336 29.25405896744123 21.29361758192877 14-15 21.75759303780616 25.96018371207016 27.343886257963433 24.93833699216024 16-17 21.028786867722257 29.123855289578334 28.017142237616305 21.830215605083108 18-19 20.948434895140554 28.044028964903905 30.218638829365553 20.788897310589984 20-21 21.71394154775601 27.15681641781402 30.348133026510794 20.78110900791917 22-23 21.424252191567042 27.079919405670914 30.21745201936396 21.278376383398083 24-25 21.184219394769922 27.243816329176784 30.293686772594874 21.27827750345842 26-27 21.168084783719713 27.41068813365089 30.23714267815995 21.184084404469445 28-29 21.03401168265475 27.59616852289672 30.173308703924445 21.19651109052409 30-31 21.299193907803204 27.396810267986897 30.13682736838026 21.167168455829636 32-33 21.111036256777744 27.534336460903692 30.08411895516475 21.27050832715381 34-35 21.28468093118171 27.594250870022048 30.00742783220266 21.113640366593582 36-37 21.27556989922152 27.529311655637066 29.971885188894426 21.22323325624699 38-39 21.151001583675217 27.74180991191857 29.94643981682778 21.160748687578433 40-41 21.432621962478596 27.63364934683958 29.705852365978902 21.227876324702926 42-43 21.319055147112227 27.71168425854959 29.505620530885775 21.463640063452406 44-45 21.445940976528448 27.90974677089732 29.21548782441005 21.428824428164184 46-47 21.49186905073813 28.00279469815426 28.884144035112747 21.62119221599486 48-49 21.502253127046675 28.051377012419636 28.81744458578189 21.6289252747518 50-51 21.535599981871943 28.168634195943575 28.64725518618692 21.64851063599756 52-53 21.62775073991914 28.189212392304274 28.459108166038227 21.72392870173836 54-55 21.653288944652388 28.08252326971445 28.504597116718735 21.75959066891443 56-57 21.667097965078852 28.164325969815913 28.4364646447907 21.73211142031454 58-59 21.668130398659603 28.14953310067384 28.503417111595063 21.678919389071496 60-61 21.719912837029103 28.12641436178913 28.49737045330742 21.65630234787435 62-63 21.67144854833253 28.20218183423758 28.425911539266696 21.70045807816319 64-65 21.63202474930382 28.20555859369369 28.3626832195341 21.799733437468387 66-67 21.742213178419664 28.15259086329946 28.232082728099527 21.873113230181353 68-69 21.686668109365552 28.191761740589143 28.269697839060143 21.85187231098516 70-71 21.73356939416325 27.98906843279077 28.309552503668016 21.967809669377964 72-73 21.78449460591398 28.01612149395116 28.28771965421743 21.91166424591743 74-75 21.657518568629484 28.137738284824003 28.218382619503856 21.986360527042656 76-77 21.784567019513336 28.09453694767816 28.109896912287063 22.010999120521443 78-79 21.76805435011964 28.067421185708174 28.107603523589276 22.05692094058291 80-81 21.776725725046507 28.117588740214767 28.107543491751823 21.998142042986903 82-83 21.848179258108033 28.060948335487556 28.179280367894293 21.911592038510115 84-85 21.986465994288192 28.015287987706973 28.087411727348126 21.910834290656705 86-87 21.778708186745174 28.097889718305 28.157446782293295 21.965955312656526 88-89 21.91213926685049 28.055786023583945 28.062404898396693 21.969669811168867 90-91 21.949327836703667 28.037290990642443 28.069727126842952 21.94365404581094 92-93 21.95909653505679 28.045000856461016 28.068215746740634 21.92768686174156 94-95 21.831488479816315 28.09739597714656 28.11013718728844 21.960978355748686 96-97 21.87751290792392 28.193010073210722 28.198739285975314 21.73073773289004 98-99 22.078128753798445 28.966150713762488 27.22689125820821 21.72882927423086 100 20.25891158094297 28.6492357687196 28.292287435213247 22.799565215124183 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2684.0 1 2228.5 2 2709.5 3 3872.5 4 5172.0 5 8478.5 6 11504.5 7 14028.0 8 16133.0 9 16206.0 10 14736.5 11 13149.5 12 13870.0 13 18016.0 14 28302.0 15 42558.5 16 54241.5 17 61375.0 18 62865.0 19 59119.0 20 53037.5 21 46354.0 22 41498.0 23 41620.0 24 46306.5 25 55068.0 26 68123.0 27 83304.0 28 99719.5 29 117573.5 30 135312.5 31 153625.5 32 174086.5 33 193969.5 34 213410.0 35 231471.5 36 249905.5 37 267191.5 38 280015.5 39 291653.5 40 304151.0 41 316690.5 42 325881.5 43 333047.0 44 338123.5 45 342407.0 46 345270.5 47 343062.5 48 337542.5 49 327117.0 50 312296.5 51 294822.5 52 273326.5 53 251458.0 54 230567.5 55 207162.5 56 183969.5 57 161020.5 58 138238.5 59 118383.5 60 97703.0 61 78701.0 62 62445.0 63 47665.5 64 35443.5 65 25848.5 66 19435.0 67 15008.0 68 11501.0 69 8383.0 70 5992.5 71 4380.0 72 3094.0 73 2086.5 74 1397.5 75 955.0 76 677.0 77 462.0 78 306.5 79 228.5 80 161.0 81 112.5 82 89.0 83 66.5 84 50.5 85 40.5 86 34.0 87 29.0 88 18.0 89 8.0 90 4.0 91 3.0 92 2.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 5.197254544243684E-4 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.006756430907516789 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 3.0224318849638245E-5 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0016823179936906393 36-37 0.03696172097375907 38-39 0.11761507465252005 40-41 0.15336047981654072 42-43 0.05431446914942458 44-45 0.001477354504379707 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.008965425986826182 64-65 0.07077218901488708 66-67 0.16964089366336563 68-69 0.18676580607409146 70-71 0.07257678941025565 72-73 0.004784609910753976 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 103.0 20-21 478.0 22-23 1019.0 24-25 2290.0 26-27 3778.0 28-29 6103.0 30-31 11248.0 32-33 12344.0 34-35 16022.0 36-37 22662.0 38-39 25657.0 40-41 35848.0 42-43 36951.0 44-45 43052.0 46-47 49667.0 48-49 41902.0 50-51 39997.0 52-53 32454.0 54-55 37250.0 56-57 39517.0 58-59 38536.0 60-61 21936.0 62-63 37223.0 64-65 49895.0 66-67 62565.0 68-69 58970.0 70-71 60150.0 72-73 57672.0 74-75 55435.0 76-77 52792.0 78-79 57977.0 80-81 59332.0 82-83 60978.0 84-85 64215.0 86-87 71191.0 88-89 77579.0 90-91 80435.0 92-93 86653.0 94-95 102721.0 96-97 285114.0 98-99 45241.0 100-101 6328647.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.9995394341281 #Duplication Level Percentage of deduplicated Percentage of total 1 87.6383514747629 72.73942809171561 2 8.551091326947056 14.194732835915454 3 2.2032105894356797 5.485963925986658 4 0.7811058316768638 2.5932569711396507 5 0.3550444297258544 1.4734262072949287 6 0.17532718585428841 0.8731245405712631 7 0.09361959122641407 0.5439268067662594 8 0.062235380500832625 0.4132406334461459 9 0.036471883945062164 0.2724434612761617 >10 0.10152394376067352 1.21554678358189 >50 0.001556829317345385 0.08966251537154857 >100 3.910557344367284E-4 0.07063737615056925 >500 7.047711253128909E-5 0.034609850783797386 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.2086638474985312E-5 2 0.0 3.625991542495594E-5 0.0 1.2086638474985312E-5 1.2086638474985312E-5 3 0.0 3.625991542495594E-5 0.0 1.2086638474985312E-5 1.2086638474985312E-5 4 0.0 7.251983084991188E-5 0.0 1.2086638474985312E-5 1.2086638474985312E-5 5 0.0 7.251983084991188E-5 0.0 1.2086638474985312E-5 1.2086638474985312E-5 6 1.5712630017480905E-4 7.251983084991188E-5 0.0 1.2086638474985312E-5 1.2086638474985312E-5 7 1.5712630017480905E-4 7.251983084991188E-5 0.0 1.2086638474985312E-5 1.2086638474985312E-5 8 1.5712630017480905E-4 7.251983084991188E-5 0.0 1.2086638474985312E-5 1.2086638474985312E-5 9 1.5712630017480905E-4 9.66931077998825E-5 0.0 1.2086638474985312E-5 4.834655389994125E-5 10-11 1.631696194123017E-4 9.66931077998825E-5 0.0 6.043319237492656E-5 4.834655389994125E-5 12-13 1.6921293864979436E-4 1.0273642703737515E-4 0.0 6.647651161241922E-5 4.834655389994125E-5 14-15 1.812995771247797E-4 1.5712630017480905E-4 0.0 8.460646932489718E-5 5.4389873137433906E-5 16-17 2.7799268492466214E-4 1.5712630017480905E-4 0.0 1.087797462748678E-4 6.043319237492656E-5 18-19 2.7799268492466214E-4 1.6921293864979436E-4 0.0 1.087797462748678E-4 1.0273642703737516E-4 20-21 2.7799268492466214E-4 1.812995771247797E-4 0.0 1.3295302322483842E-4 1.4503966169982375E-4 22-23 2.840360041621548E-4 2.5381940797469154E-4 0.0 1.4503966169982375E-4 1.4503966169982375E-4 24-25 2.900793233996475E-4 2.961226426371401E-4 0.0 1.6921293864979436E-4 1.5712630017480905E-4 26-27 2.900793233996475E-4 3.142526003496181E-4 0.0 2.054728540747503E-4 1.631696194123017E-4 28-29 2.900793233996475E-4 3.142526003496181E-4 0.0 4.8346553899941247E-4 1.8129957712477966E-4 30-31 2.900793233996475E-4 3.988590696745153E-4 0.0 0.0011844905705485605 1.93386215599765E-4 32-33 2.900793233996475E-4 4.049023889120079E-4 0.0 0.0028101434454340848 1.93386215599765E-4 34-35 3.142526003496181E-4 4.955521774743978E-4 0.0 0.00445996959726958 1.93386215599765E-4 36-37 3.2029591958711073E-4 5.80158646799295E-4 0.0 0.0069860770385415105 1.93386215599765E-4 38-39 3.263392388246034E-4 5.922452852742803E-4 0.0 0.010726891646549464 1.93386215599765E-4 40-41 3.384258772995887E-4 6.526784776492068E-4 0.0 0.014649005831682198 1.93386215599765E-4 42-43 3.384258772995887E-4 6.768517545991774E-4 0.0 0.01877659287088968 1.93386215599765E-4 44-45 3.384258772995887E-4 7.37284946974104E-4 0.0 0.022233371474735482 1.93386215599765E-4 46-47 3.384258772995887E-4 7.856315008740452E-4 0.0 0.025490720543744023 2.054728540747503E-4 48-49 3.384258772995887E-4 7.91674820111538E-4 0.0 0.029068365532339675 2.054728540747503E-4 50-51 3.5051251577457407E-4 8.883679279114204E-4 0.0 0.03312343274069725 2.054728540747503E-4 52-53 3.625991542495594E-4 8.944112471489131E-4 0.0 0.03754109910330438 2.054728540747503E-4 54-55 3.625991542495594E-4 9.004545663864057E-4 0.0 0.04059901863747566 2.054728540747503E-4 56-57 3.625991542495594E-4 9.185845240988837E-4 0.0 0.04322181918654748 2.054728540747503E-4 58-59 3.625991542495594E-4 9.185845240988837E-4 0.0 0.04612261242054395 2.054728540747503E-4 60-61 4.049023889120079E-4 9.427578010488542E-4 0.0 0.04823777415366638 2.175594925497356E-4 62-63 4.7137890052442716E-4 9.608877587613323E-4 0.0 0.04988760030550188 2.175594925497356E-4 64-65 4.7137890052442716E-4 0.001087797462748678 0.0 0.05240766442753631 2.175594925497356E-4 66-67 4.7742221976191984E-4 0.001087797462748678 0.0 0.05639021180504397 2.2360281178722825E-4 68-69 4.8346553899941247E-4 0.0011361440166486193 0.0 0.060838094763838564 2.2964613102472093E-4 70-71 4.955521774743978E-4 0.0011663606128360826 0.0 0.0646816457988839 2.4173276949970623E-4 72-73 5.559853698493243E-4 0.0011724039320735753 0.0 0.0681323810834922 2.4173276949970623E-4 74-75 5.559853698493243E-4 0.0011784472513110679 0.0 0.07087604801731387 2.4173276949970623E-4 76-77 5.80158646799295E-4 0.001208663847498531 0.0 0.07323898583917349 2.4173276949970623E-4 78-79 5.922452852742803E-4 0.0012328371244485017 0.0 0.07481024884092158 2.4173276949970623E-4 80-81 5.922452852742803E-4 0.0012328371244485017 0.0 0.07544479736085832 2.477760887371989E-4 82-83 5.982886045117729E-4 0.0012509670821609798 0.0 0.07572883336502048 2.5381940797469154E-4 84-85 6.043319237492656E-4 0.0012872269975859358 0.0 0.0759403495383327 2.5986272721218416E-4 86-87 6.043319237492656E-4 0.0012932703168234284 0.0 0.07601286936918263 2.6590604644967684E-4 88 6.043319237492656E-4 0.0013416168707233696 0.0 0.07601286936918263 2.7799268492466214E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13910 0.0 46.861427 1 GTATCAA 25125 0.0 37.035336 1 TCAACGC 29235 0.0 31.407751 4 ATCAACG 29455 0.0 31.113476 3 CAACGCA 29930 0.0 30.649063 5 TATCAAC 30475 0.0 30.187489 2 AACGCAG 30770 0.0 29.872393 6 CGCAGAG 34930 0.0 26.31489 8 ACGCAGA 34975 0.0 26.268463 7 GCAGAGT 40255 0.0 22.76839 9 GTACATG 23990 0.0 21.45498 1 GAGTACT 26480 0.0 21.339252 12-13 TACATGG 23270 0.0 21.268824 2 ACATGGG 23385 0.0 20.431189 3 GTGGTAT 7350 0.0 19.973797 1 AGAGTAC 35835 0.0 19.81122 10-11 CAGAGTA 39280 0.0 19.78595 10-11 TGGTATC 7110 0.0 19.473429 2 GTACTTT 29490 0.0 19.145645 14-15 CATGGGG 16325 0.0 18.44331 4 >>END_MODULE