##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139152_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8418527 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.70128325299663 33.0 33.0 33.0 33.0 33.0 2 32.77918904340391 33.0 33.0 33.0 33.0 33.0 3 33.51127269651805 33.0 33.0 33.0 33.0 37.0 4 36.61144354588398 37.0 37.0 37.0 37.0 37.0 5 36.625578916596695 37.0 37.0 37.0 37.0 37.0 6 36.599723918447964 37.0 37.0 37.0 37.0 37.0 7 36.59168617027658 37.0 37.0 37.0 37.0 37.0 8 36.56996906941084 37.0 37.0 37.0 37.0 37.0 9 36.60641392490634 37.0 37.0 37.0 37.0 37.0 10-11 36.59916420057809 37.0 37.0 37.0 37.0 37.0 12-13 36.84095685622913 37.0 37.0 37.0 37.0 38.5 14-15 38.669100841513014 40.0 37.0 40.0 37.0 40.0 16-17 38.60527031629167 40.0 37.0 40.0 37.0 40.0 18-19 38.636952224539996 40.0 37.0 40.0 37.0 40.0 20-21 38.649605853099004 40.0 37.0 40.0 37.0 40.0 22-23 38.64896996991058 40.0 37.0 40.0 37.0 40.0 24-25 38.63924879740591 40.0 37.0 40.0 37.0 40.0 26-27 38.55836031646829 40.0 37.0 40.0 37.0 40.0 28-29 38.44547722441912 40.0 37.0 40.0 37.0 40.0 30-31 38.30144322686833 40.0 37.0 40.0 37.0 40.0 32-33 38.18154513653445 40.0 37.0 40.0 37.0 40.0 34-35 38.145351328795044 40.0 37.0 40.0 37.0 40.0 36-37 38.1307378101189 40.0 37.0 40.0 37.0 40.0 38-39 38.08261311310337 40.0 37.0 40.0 37.0 40.0 40-41 38.076487388890556 40.0 37.0 40.0 37.0 40.0 42-43 38.03477088784872 40.0 37.0 40.0 35.0 40.0 44-45 37.93138573168795 40.0 37.0 40.0 33.0 40.0 46-47 37.85492737705779 40.0 37.0 40.0 33.0 40.0 48-49 37.805718177923524 40.0 37.0 40.0 33.0 40.0 50-51 37.74943392402127 40.0 37.0 40.0 33.0 40.0 52-53 37.70916564166582 40.0 37.0 40.0 33.0 40.0 54-55 37.59973926358727 40.0 37.0 40.0 33.0 40.0 56-57 37.418869201059294 40.0 37.0 40.0 33.0 40.0 58-59 37.21174533408619 37.0 37.0 40.0 33.0 40.0 60-61 37.06980602577436 37.0 37.0 40.0 33.0 40.0 62-63 36.95666626965872 37.0 37.0 40.0 33.0 40.0 64-65 36.79126137648926 37.0 37.0 40.0 33.0 40.0 66-67 36.59709549095572 37.0 37.0 40.0 33.0 40.0 68-69 36.39852146033108 37.0 37.0 40.0 33.0 40.0 70-71 36.17855030576861 37.0 37.0 38.5 33.0 40.0 72-73 35.870066425191126 37.0 37.0 37.0 33.0 40.0 74-75 35.26361368102757 37.0 33.0 37.0 30.0 40.0 76-77 33.581299169382895 35.0 33.0 37.0 27.0 37.0 78-79 35.13508765111405 37.0 33.0 37.0 33.0 37.0 80-81 35.32331222396837 37.0 33.0 37.0 33.0 37.0 82-83 35.17320380137019 37.0 33.0 37.0 33.0 37.0 84-85 35.01632766475082 37.0 33.0 37.0 33.0 37.0 86-87 34.89689912791731 37.0 33.0 37.0 33.0 37.0 88-89 34.8021535658309 37.0 33.0 37.0 33.0 37.0 90-91 34.729378239750396 37.0 33.0 37.0 33.0 37.0 92-93 34.6605265449775 37.0 33.0 37.0 33.0 37.0 94-95 34.66542748915499 37.0 33.0 37.0 33.0 37.0 96-97 34.696670611650504 37.0 33.0 37.0 33.0 37.0 98-99 34.69151367206666 37.0 33.0 37.0 33.0 37.0 100 34.6010065927513 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 11.0 20 42.0 21 212.0 22 823.0 23 2474.0 24 5832.0 25 11480.0 26 20830.0 27 34167.0 28 52033.0 29 75370.0 30 104347.0 31 142712.0 32 195347.0 33 267065.0 34 379062.0 35 568733.0 36 1024132.0 37 2493947.0 38 2921096.0 39 118810.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.89728477150016 0.02073999247848612 25.322034115743413 29.75994112027794 2 14.384342213608397 23.726163828554895 39.98562453109268 21.903869426744027 3 16.506286254862193 24.803475097659614 33.26160660429153 25.428632043186656 4 12.519577355991137 23.47332258956941 38.04473157833906 25.96236847610039 5 16.85471817100545 36.55676343379311 32.63284657755448 13.955671817646959 6 27.117214210989644 37.81825490373791 20.548796719426093 14.515734165846354 7 25.075289299422572 33.38453389767592 23.14997623693551 18.390200565965994 8 23.3746026323373 32.758727596731305 22.66292222652754 21.203747544403853 9 23.37014662200639 21.101113046263013 24.22464381498026 31.304096516750334 10-11 24.574937804721525 26.363373898824182 28.669761973248146 20.391926323206146 12-13 24.673979684144264 24.264319715579447 28.83538131639304 22.22631928388325 14-15 21.960203356916715 26.541554498016808 27.24081810783609 24.25742403723039 16-17 20.881158901076162 28.946732605359582 28.30502889638532 21.867079597178936 18-19 20.820358478389387 27.896477614195454 30.286361260111182 20.996802647303976 20-21 21.83818407938776 27.43466877509533 30.035510241972958 20.691636903543962 22-23 21.418110183555306 27.070448661312795 30.037583770786995 21.473857384344903 24-25 21.125868376185476 27.33099768120113 30.38132118361704 21.16181275899636 26-27 21.192950890624594 27.751330257818545 29.984569330257106 21.071149521299755 28-29 20.985449553314474 27.568995678303626 30.186709250573866 21.25884551780803 30-31 21.31528067855873 27.670173500329348 29.984643204737253 21.02990261637467 32-33 21.398676765094915 27.7295708120196 29.803836585376636 21.067915837508846 34-35 21.165665145031912 27.59074150665831 29.990794861435916 21.25279848687386 36-37 21.27589303248176 27.79639443247028 29.89658227170151 21.031130263346455 38-39 21.067096263740005 27.738907878368806 29.98926919541467 21.204726662476514 40-41 21.48644861561066 27.67822046594171 29.607498287565175 21.22783263088245 42-43 21.639135925569807 27.495948465206737 29.54577382939369 21.31914177982976 44-45 21.408221059973105 28.30543417074436 28.985991324997922 21.300353444284607 46-47 21.569691279704976 27.794585420629364 28.55049955421437 22.085223745451284 48-49 21.69303148050832 27.80454108985645 28.72919551516872 21.77323191446651 50-51 21.37043489221276 28.123601005851974 28.448379121707557 22.05758498022771 52-53 21.59396279749453 28.017741037008303 28.497650177373878 21.89064598812329 54-55 21.684080792104634 28.09057612483572 28.307068358618388 21.918274724441254 56-57 21.925905097445504 28.539946236091186 27.733560690568364 21.800587975894942 58-59 21.6218067039554 28.47933961200715 28.374826339922656 21.5240273441148 60-61 21.796798476676486 28.535933057712633 27.876212181198884 21.791056284412004 62-63 21.750783548356612 28.57531490343323 27.844929588223028 21.828971959987133 64-65 21.618058145291865 28.500191181546384 27.8910828872662 21.99066778589555 66-67 21.8096862565726 28.47934173987262 27.6852086574648 22.02576334608998 68-69 21.928534890177552 28.305125645778716 27.919342884407765 21.846996579635963 70-71 21.918964429601168 27.686359585363274 28.072101790424455 22.322574194611104 72-73 21.878296806135427 27.93730914996624 28.039834665615153 22.14455937828318 74-75 21.666172720071575 27.993599216189775 28.16863557158976 22.171592492148896 76-77 21.894062621044302 27.992111178968532 27.69838938303348 22.415436816953687 78-79 21.82120772949398 28.02879497657505 27.859562448529328 22.290434845401638 80-81 21.811540777121284 27.982732326368907 27.91385915032866 22.29186774618115 82-83 22.118067131961638 27.622165682595814 28.083460667927955 22.176306517514597 84-85 22.488613192035327 27.54133469242278 27.931715089673297 22.038337025868593 86-87 21.836660710906088 27.857982738410207 27.93644522677464 22.368911323909057 88-89 22.119840912009796 27.65055085344178 28.011212993945193 22.218395240603233 90-91 22.318060118029283 27.62434996087297 27.96368374701958 22.093906174078167 92-93 22.129626451047287 27.638984979878106 27.976272604121554 22.25511596495305 94-95 22.2731031929799 27.487304904336234 27.85393174259314 22.385660160090723 96-97 22.018247827984208 27.93296238619451 28.260600188472306 21.78818959734898 98-99 23.241263265899935 29.899338044993033 27.622991929432306 19.236406759674725 100 22.54114771286603 30.271311860176013 21.805386318470177 25.382154108487782 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1073.0 1 1133.0 2 2658.0 3 4372.0 4 6418.0 5 12207.0 6 16837.0 7 18689.0 8 18856.0 9 16959.5 10 14575.5 11 12181.0 12 12699.5 13 16888.0 14 28302.5 15 47267.5 16 65205.5 17 76626.0 18 79053.0 19 73766.5 20 64957.5 21 55419.5 22 48657.0 23 47371.5 24 51757.5 25 62518.5 26 80912.5 27 101067.0 28 115815.0 29 131974.5 30 146864.5 31 160565.0 32 181353.0 33 205230.0 34 232793.0 35 258500.0 36 285986.5 37 312855.0 38 320309.5 39 322583.0 40 333869.5 41 339971.0 42 342234.0 43 350817.0 44 359183.5 45 366539.0 46 374432.5 47 381010.0 48 381778.0 49 374622.5 50 363526.0 51 344921.5 52 318293.5 53 290657.5 54 264017.0 55 236215.5 56 207406.5 57 178619.5 58 151329.0 59 128833.5 60 106168.5 61 80343.5 62 59081.0 63 43241.5 64 30317.0 65 21202.0 66 15197.0 67 10912.5 68 7889.0 69 5718.0 70 4493.5 71 3540.0 72 2671.5 73 1900.5 74 1310.0 75 870.0 76 625.0 77 438.0 78 296.0 79 208.5 80 129.5 81 68.5 82 50.5 83 32.5 84 19.0 85 14.0 86 11.5 87 10.0 88 7.0 89 4.5 90 2.5 91 1.5 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.0690706343283094E-4 2 2.2569268946930976E-4 3 1.1878562603647884E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 1.1878562603647884E-5 9 1.0690706343283094E-4 10-11 9.799814148009503E-4 12-13 0.006770780684079293 14-15 3.3259975290214074E-4 16-17 0.0 18-19 0.0 20-21 0.0 22-23 4.158020706111512E-5 24-25 4.752973980378654E-5 26-27 5.943559365905426E-6 28-29 1.7843745178471356E-5 30-31 2.9788932899058358E-5 32-33 3.106904892980869E-4 34-35 0.005601458058333128 36-37 0.04428038229553963 38-39 0.1425111475939865 40-41 0.1641667184502515 42-43 0.04839535184699557 44-45 0.005577002415535268 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 6.5781112558587944E-6 56-57 1.993273366811467E-5 58-59 6.713766423635036E-5 60-61 0.0016832620695829317 62-63 0.01908193457469517 64-65 0.09321295915358194 66-67 0.20327997587968036 68-69 0.19960042951055385 70-71 0.07386128482696865 72-73 0.004752516344768465 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 123.0 20-21 627.0 22-23 1465.0 24-25 2802.0 26-27 5111.0 28-29 10657.0 30-31 22495.0 32-33 29149.0 34-35 39558.0 36-37 56429.0 38-39 66324.0 40-41 70391.0 42-43 83494.0 44-45 95410.0 46-47 92479.0 48-49 80869.0 50-51 71028.0 52-53 70768.0 54-55 74607.0 56-57 77734.0 58-59 79760.0 60-61 79893.0 62-63 78566.0 64-65 82537.0 66-67 92718.0 68-69 77921.0 70-71 76478.0 72-73 75296.0 74-75 73352.0 76-77 70534.0 78-79 77687.0 80-81 79549.0 82-83 74658.0 84-85 83196.0 86-87 89054.0 88-89 95736.0 90-91 96462.0 92-93 102021.0 94-95 124873.0 96-97 380017.0 98-99 1418454.0 100-101 4058245.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 77.14017415188007 #Duplication Level Percentage of deduplicated Percentage of total 1 86.19516223642474 66.4910982596736 2 8.312873256292859 12.825129813858748 3 2.6633344541701165 6.163502508581557 4 1.1604346385964102 3.5806452045280444 5 0.5971710535150871 2.3032939533307752 6 0.32941564370024823 1.5246708074034494 7 0.20987827936218392 1.1333032914487062 8 0.13964145976132997 0.8617573219849397 9 0.09035758761956221 0.6273180040425111 >10 0.2956434703625874 3.3213339541754925 >50 0.003264663957070404 0.16973066651986174 >100 0.002094817920617288 0.31668563339427275 >500 3.642191957741907E-4 0.19708018364255347 >1k 3.6421912146796746E-4 0.48445039741548046 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.3757125207295764E-5 0.0 0.0 0.0 3 0.0 2.3757125207295764E-5 0.0 0.0 0.0 4 0.0 2.3757125207295764E-5 0.0 0.0 0.0 5 0.0 2.3757125207295764E-5 0.0 0.0 0.0 6 0.0 2.3757125207295764E-5 0.0 0.0 0.0 7 0.0 2.3757125207295764E-5 0.0 0.0 0.0 8 0.0 3.563568781094365E-5 0.0 0.0 0.0 9 0.0 8.314993822553519E-5 0.0 1.1878562603647882E-5 0.0 10-11 0.0 8.314993822553519E-5 0.0 1.1878562603647882E-5 0.0 12-13 0.0 8.314993822553519E-5 0.0 1.1878562603647882E-5 0.0 14-15 0.0 1.6629987645107037E-4 0.0 1.7817843905471822E-5 0.0 16-17 0.0 1.900570016583661E-4 0.0 2.3757125207295764E-5 0.0 18-19 0.0 1.900570016583661E-4 0.0 2.969640650911971E-5 0.0 20-21 0.0 1.900570016583661E-4 0.0 4.157496911276759E-5 0.0 22-23 0.0 2.1381412686566188E-4 0.0 4.751425041459153E-5 0.0 24-25 0.0 2.7914622118572525E-4 0.0 5.345353171641547E-5 0.0 26-27 0.0 2.9696406509119707E-4 0.0 1.3066418864012672E-4 0.0 28-29 0.0 2.9696406509119707E-4 0.0 4.3950681633497167E-4 0.0 30-31 0.0 3.444783155057886E-4 0.0 0.001407609668532274 0.0 32-33 0.0 3.444783155057886E-4 0.0 0.0035813866249998364 0.0 34-35 0.0 3.860532846185562E-4 0.0 0.006758902121475645 0.0 36-37 0.0 4.2762825373132376E-4 0.0 0.011148031003523538 0.0 38-39 0.0 4.2762825373132376E-4 0.0 0.017651544029020756 0.0 40-41 0.0 4.513853789386195E-4 0.0 0.02409566424149973 0.0 42-43 0.0 5.345353171641548E-4 0.0 0.03069420576782613 0.0 44-45 0.0 6.1768525538969E-4 0.0 0.038076732425993284 0.0 46-47 0.0 6.1768525538969E-4 0.0 0.045411744833745854 0.0 48-49 0.0 6.1768525538969E-4 0.0 0.053168446213927925 0.0 50-51 0.0 6.889566310115772E-4 0.0 0.061311200878728545 0.0 52-53 0.0 6.889566310115772E-4 0.0 0.06889566310115772 0.0 54-55 0.0 6.948959123134011E-4 0.0 0.07558923312831331 0.0 56-57 0.0 7.008351936152251E-4 0.0 0.08074452929829648 0.0 58-59 5.939281301823941E-6 7.008351936152251E-4 0.0 0.08629181803420005 0.0 60-61 1.1878562603647882E-5 7.008351936152251E-4 0.0 0.09169062473755801 0.0 62-63 1.1878562603647882E-5 7.008351936152251E-4 0.0 0.09712506712872691 0.0 64-65 1.1878562603647882E-5 7.780458505389364E-4 0.0 0.10264859873942318 0.0 66-67 1.1878562603647882E-5 7.839851318407603E-4 0.0 0.10852848722822889 0.0 68-69 1.1878562603647882E-5 8.1368153834988E-4 0.0 0.11408171524543427 0.0 70-71 1.1878562603647882E-5 8.314993822553518E-4 0.0 0.11914198291458826 0.0 72-73 1.1878562603647882E-5 8.314993822553518E-4 0.0 0.12317475491852672 0.0 74-75 1.1878562603647882E-5 8.314993822553518E-4 0.0 0.12665517376139557 0.0 76-77 1.1878562603647882E-5 8.493172261608236E-4 0.0 0.12983268925787136 0.0 78-79 1.1878562603647882E-5 8.552565074626475E-4 0.0 0.13166198789883315 0.0 80-81 1.1878562603647882E-5 8.611957887644714E-4 0.0 0.13219058393469546 0.0 82-83 1.1878562603647882E-5 8.671350700662954E-4 0.0 0.13260633362582314 0.0 84-85 1.1878562603647882E-5 8.671350700662954E-4 0.0 0.13282608703399063 0.0 86-87 1.1878562603647882E-5 8.671350700662954E-4 0.0 0.13295081194132893 0.0 88 1.1878562603647882E-5 9.14649320480887E-4 0.0 0.13295675122263076 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14955 0.0 46.152256 1 GTATCAA 26095 0.0 35.62688 1 CTTATAC 7600 0.0 30.308641 1 ATCAACG 30905 0.0 29.437187 3 TATCAAC 33335 0.0 27.814241 2 TCAACGC 33050 0.0 27.57706 4 ACGCAGA 32990 0.0 27.567915 7 AACGCAG 33280 0.0 27.301933 6 CAACGCA 33350 0.0 27.267578 5 TATACAC 9490 0.0 25.759272 3 CGCAGAG 38015 0.0 23.880465 8 GCAGAGT 42280 0.0 21.451885 9 ACACATC 10680 0.0 21.22034 6 ACATGGG 26720 0.0 20.782806 3 TACATGG 27660 0.0 20.616697 2 GAGTACT 27725 0.0 20.023514 12-13 GTGGTAT 7625 0.0 19.595203 1 GTACATG 29970 0.0 19.553976 1 TGGTATC 7575 0.0 18.738205 2 CAGAGTA 42450 0.0 18.691507 10-11 >>END_MODULE