##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139151_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14864597 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.596448528002476 33.0 33.0 33.0 33.0 33.0 2 32.6306663409711 33.0 33.0 33.0 33.0 33.0 3 32.66654218745386 33.0 33.0 33.0 33.0 33.0 4 36.593123715362076 37.0 37.0 37.0 37.0 37.0 5 36.6072949707281 37.0 37.0 37.0 37.0 37.0 6 36.58654849505842 37.0 37.0 37.0 37.0 37.0 7 36.565027427248786 37.0 37.0 37.0 37.0 37.0 8 36.54634094688205 37.0 37.0 37.0 37.0 37.0 9 36.58142410453509 37.0 37.0 37.0 37.0 37.0 10-11 36.555862933922796 37.0 37.0 37.0 37.0 37.0 12-13 36.54876223687732 37.0 37.0 37.0 37.0 37.0 14-15 38.620969071680854 40.0 37.0 40.0 37.0 40.0 16-17 38.55544765189396 40.0 37.0 40.0 37.0 40.0 18-19 38.58565196890302 40.0 37.0 40.0 37.0 40.0 20-21 38.59654709996772 40.0 37.0 40.0 37.0 40.0 22-23 38.58854748953719 40.0 37.0 40.0 37.0 40.0 24-25 38.58696735325647 40.0 37.0 40.0 37.0 40.0 26-27 38.50879776993621 40.0 37.0 40.0 37.0 40.0 28-29 38.39018855568244 40.0 37.0 40.0 37.0 40.0 30-31 38.24571837371429 40.0 37.0 40.0 37.0 40.0 32-33 38.12097554658571 40.0 37.0 40.0 37.0 40.0 34-35 38.06606965222791 40.0 37.0 40.0 35.0 40.0 36-37 38.04503729589342 40.0 37.0 40.0 33.0 40.0 38-39 37.990019888667035 40.0 37.0 40.0 33.0 40.0 40-41 37.97317073449919 40.0 37.0 40.0 33.0 40.0 42-43 37.934313097582596 40.0 37.0 40.0 33.0 40.0 44-45 37.823929277831255 40.0 37.0 40.0 33.0 40.0 46-47 37.740551695158125 40.0 37.0 40.0 33.0 40.0 48-49 37.66386212673112 40.0 37.0 40.0 33.0 40.0 50-51 37.606315344578285 40.0 37.0 40.0 33.0 40.0 52-53 37.54713230499023 40.0 37.0 40.0 33.0 40.0 54-55 37.432810611749986 40.0 37.0 40.0 33.0 40.0 56-57 37.250110025832356 38.5 37.0 40.0 33.0 40.0 58-59 37.00894498154534 37.0 37.0 40.0 33.0 40.0 60-61 36.84956595974419 37.0 37.0 40.0 33.0 40.0 62-63 36.72175528153912 37.0 37.0 40.0 33.0 40.0 64-65 36.55249221506472 37.0 37.0 40.0 33.0 40.0 66-67 36.348861973639686 37.0 37.0 40.0 33.0 40.0 68-69 36.14903115619869 37.0 37.0 40.0 33.0 40.0 70-71 35.93651963600573 37.0 37.0 38.5 33.0 40.0 72-73 35.646412650788335 37.0 33.0 37.0 33.0 40.0 74-75 35.310888346007246 37.0 33.0 37.0 33.0 40.0 76-77 33.01642394623664 33.0 33.0 37.0 27.0 37.0 78-79 34.83774151506509 37.0 33.0 37.0 30.0 37.0 80-81 35.11026695367549 37.0 33.0 37.0 33.0 37.0 82-83 34.97219804635654 37.0 33.0 37.0 33.0 37.0 84-85 34.80009022037354 37.0 33.0 37.0 33.0 37.0 86-87 34.68148957958118 37.0 33.0 37.0 33.0 37.0 88-89 34.57359673787104 37.0 33.0 37.0 33.0 37.0 90-91 34.50269483887615 37.0 33.0 37.0 33.0 37.0 92-93 34.432496937560686 37.0 33.0 37.0 33.0 37.0 94-95 34.42666593565944 37.0 33.0 37.0 33.0 37.0 96-97 34.47198479334353 37.0 33.0 37.0 33.0 37.0 98-99 34.488521187092225 37.0 33.0 37.0 33.0 37.0 100 34.41678918232526 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 0.0 16 0.0 17 3.0 18 4.0 19 11.0 20 103.0 21 467.0 22 1792.0 23 5658.0 24 13246.0 25 26946.0 26 47235.0 27 76302.0 28 112383.0 29 158171.0 30 212617.0 31 282452.0 32 373059.0 33 504528.0 34 703463.0 35 1056048.0 36 1928067.0 37 4582179.0 38 4639538.0 39 140324.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.28502660180113 20.643690595001075 14.61557479366239 23.45570800953541 2 14.26556280613505 20.49071216979932 43.050607824961375 22.193117199104258 3 17.954594931473412 26.677004877899137 30.625474113120866 24.74292607750658 4 11.953422750271853 17.949892482782577 39.489233343442365 30.6074514235032 5 12.793364851624625 38.06893238134423 35.82151173163401 13.316191035397127 6 29.149968152514877 38.50903179608783 18.667301822397324 13.673698228999967 7 25.878120064615278 33.14697553838665 23.17125874123992 17.803645655758153 8 24.0839576131097 36.869128498346 21.230748551793805 17.81616533675049 9 25.251900556194062 17.039750020787647 21.627308269932126 36.08104115308616 10-11 24.137196588646166 27.162128916108525 28.641112840126105 20.059561655119207 12-13 24.93185998950181 24.386289137279384 28.94452819165105 21.737322681567765 14-15 22.037874725941553 25.748432678328882 27.125035234884653 25.088657360844913 16-17 21.19394155119039 28.979494028664217 27.634509701137546 22.192054719007857 18-19 21.03457631579248 27.758091928089275 30.004234221755222 21.203097534363025 20-21 22.221474713940168 27.09708589726805 29.78065146871698 20.9007879200748 22-23 21.63764828065739 27.074058774985737 29.736082203851876 21.552210740504993 24-25 21.34597863197954 27.169535889195867 30.1543812678602 21.330104210964393 26-27 21.41991961708136 27.47030422636868 29.82939287440104 21.280383282148918 28-29 21.137748169338373 27.600105962099086 29.85435330317917 21.40779256538337 30-31 21.854339895472048 27.376482818679886 29.694395043427768 21.0747822424203 32-33 21.63752969222268 27.55119628668089 29.634668791088835 21.176605230007592 34-35 21.45856023017398 27.670276179300302 29.75816248414157 21.113001106384147 36-37 21.740581368178503 27.24563233524882 29.69626386809289 21.317522428479787 38-39 21.340499433898067 27.43151284473136 29.81403981341455 21.41394790795602 40-41 21.725390973976918 27.420533646059603 29.561002289475415 21.29307309048807 42-43 21.789549365759495 27.407628906173542 29.34541541338595 21.457406314681013 44-45 21.64775830772707 27.92958282622957 28.899927655397544 21.522731210645812 46-47 21.953411969065677 27.476718282972453 28.380702648046757 22.189167099915117 48-49 21.96323440133132 27.600107832171684 28.467311792075385 21.969345974421618 50-51 21.563112631457983 27.829080872188083 28.447621752591047 22.160184743762894 52-53 21.873350219455688 27.902944903875294 28.265864432784525 21.9578404438845 54-55 22.031515507629308 27.758353638443367 28.107412361688848 22.102718492238473 56-57 22.163507123096807 28.027905389342628 27.749690582346286 22.058896905214272 58-59 21.78994431337157 28.28113842775789 28.2293282422351 21.69958901663544 60-61 21.948520748340574 28.418888188224905 27.742300011480147 21.890291051954375 62-63 21.831297416995245 28.44421300220006 27.66813333646142 22.056356244343274 64-65 21.82491381715449 28.389642564824324 27.761576084918776 22.023867533102408 66-67 22.031035059309474 28.39638999263263 27.37940218611102 22.193172761946876 68-69 22.133909928704274 28.055625455594452 27.74802033264661 22.062444283054663 70-71 22.064518528469044 27.54926608124651 27.877385673121335 22.508829717163113 72-73 22.20901316774645 27.636004463152826 27.911082160571993 22.243900208528732 74-75 21.87347255750883 27.956168244372382 27.781514943556758 22.388844254562027 76-77 22.022473315884778 27.933195515730887 27.58054317651288 22.463787991871456 78-79 22.212754902224066 27.87638601828054 27.544027999828423 22.366831079666973 80-81 22.050135409743007 27.696164558393228 27.660733983748376 22.592966048115393 82-83 22.28466990949483 27.564814001316336 27.807195585750595 22.343320503438242 84-85 22.689723754840234 27.458017775597614 27.55157686191867 22.300681607643483 86-87 21.995871450001292 27.728071732611532 27.69785848080586 22.578198336581316 88-89 22.431037514395545 27.58418501365465 27.652973708909883 22.331803763039925 90-91 22.48582445514327 27.51889132986973 27.78144998108004 22.213834233906958 92-93 22.46384733290825 27.575711020213877 27.60609577837021 22.35434586850766 94-95 22.249846380435944 27.573347218949785 27.68031997834451 22.496486422269765 96-97 22.218981735964903 27.736133150335746 27.93889632172543 22.105988791973918 98-99 23.36249439827536 29.655819133335477 27.993451853379902 18.988234615009265 100 22.698490864147512 30.519054183668526 21.63592734521132 25.14652760697264 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2094.0 1 2201.5 2 4475.5 3 7066.5 4 10299.5 5 19136.0 6 26532.5 7 30423.0 8 31820.0 9 29431.0 10 25564.0 11 21980.0 12 23763.0 13 33342.0 14 56601.0 15 90027.5 16 118439.5 17 134997.0 18 137544.0 19 128130.5 20 112313.0 21 94806.5 22 82635.0 23 80294.0 24 87470.0 25 106450.0 26 140778.0 27 178113.0 28 199714.5 29 222173.5 30 243927.0 31 261166.0 32 294109.5 33 335327.0 34 381261.5 35 423914.5 36 473933.5 37 515666.5 38 517548.5 39 519257.0 40 542593.0 41 553906.5 42 551077.0 43 561811.0 44 576506.5 45 584968.5 46 592282.0 47 605022.5 48 626852.0 49 625559.0 50 597512.0 51 570269.0 52 541173.0 53 507610.0 54 470119.5 55 428343.5 56 383773.0 57 338347.5 58 297127.5 59 265854.0 60 226329.0 61 174434.0 62 129080.5 63 92305.5 64 65063.5 65 45723.5 66 32467.0 67 24470.0 68 18066.5 69 12876.0 70 9491.0 71 6711.5 72 4925.0 73 3518.0 74 2415.0 75 1647.5 76 1098.0 77 742.0 78 474.5 79 311.5 80 204.0 81 128.5 82 92.0 83 63.0 84 47.0 85 34.5 86 26.5 87 21.0 88 18.5 89 14.5 90 9.0 91 6.0 92 5.0 93 3.5 94 1.5 95 1.5 96 1.5 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.345478790982359E-5 2 2.5564097028664824E-4 3 6.727393954911795E-6 4 6.727393954911795E-6 5 6.727393954911795E-6 6 6.727393954911795E-6 7 6.727393954911795E-6 8 6.727393954911795E-6 9 6.727393954911795E-6 10-11 0.0 12-13 0.0072857676531694745 14-15 4.5073539497909025E-4 16-17 0.0 18-19 0.0 20-21 0.0 22-23 1.6820397247994622E-5 24-25 2.3552547887713294E-5 26-27 0.0 28-29 1.0103173949141093E-5 30-31 6.7437820390762375E-6 32-33 6.757927293690362E-6 34-35 0.0027849408693020133 36-37 0.03149453929768197 38-39 0.13557511594400165 40-41 0.18453005385993454 42-43 0.057634562990281926 44-45 0.007109546223308971 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.012773464502984532 64-65 0.07470395194379878 66-67 0.2019816889332335 68-69 0.21909430639685942 70-71 0.08657752557980297 72-73 0.005911709541094611 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 215.0 20-21 1009.0 22-23 2164.0 24-25 4369.0 26-27 7068.0 28-29 14107.0 30-31 29707.0 32-33 36577.0 34-35 49099.0 36-37 58531.0 38-39 64402.0 40-41 82150.0 42-43 96860.0 44-45 118730.0 46-47 118923.0 48-49 97236.0 50-51 84465.0 52-53 80328.0 54-55 100844.0 56-57 109655.0 58-59 107635.0 60-61 120618.0 62-63 127468.0 64-65 143133.0 66-67 167246.0 68-69 143077.0 70-71 138111.0 72-73 129900.0 74-75 132152.0 76-77 121483.0 78-79 133071.0 80-81 139082.0 82-83 140461.0 84-85 150174.0 86-87 157130.0 88-89 170978.0 90-91 181359.0 92-93 182775.0 94-95 198906.0 96-97 486316.0 98-99 919252.0 100-101 9517831.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 76.0866226105605 #Duplication Level Percentage of deduplicated Percentage of total 1 85.48217560993473 65.04050035562761 2 8.636437166965608 13.142346708454609 3 2.746643800756736 6.269485509414399 4 1.2722705345951835 3.8721107209711905 5 0.6703921636801674 2.5503937779505 6 0.37091938398076213 1.6933201912731493 7 0.23580034351740053 1.2558876224054283 8 0.16092480507673143 0.9795379930041018 9 0.10239403415059291 0.7011734610590105 >10 0.3177419385124187 3.5425554557629155 >50 0.0025814945107427503 0.1320232424094472 >100 0.0013021771928917617 0.1917363224601338 >500 2.461589843845587E-4 0.11891473642132516 >1k 1.3252411177946705E-4 0.2577150436579644 >5k 1.893201493003927E-5 0.10093394838202438 >10k+ 1.893201493003927E-5 0.1513649107461556 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.0182181864735383E-5 2 0.0 4.0364363729470766E-5 0.0 0.0 2.690957581964718E-5 3 0.0 4.0364363729470766E-5 0.0 0.0 2.690957581964718E-5 4 0.0 6.054654559420615E-5 0.0 2.0182181864735383E-5 3.363696977455898E-5 5 0.0 6.054654559420615E-5 0.0 2.0182181864735383E-5 3.363696977455898E-5 6 0.0 6.054654559420615E-5 0.0 2.690957581964718E-5 5.381915163929436E-5 7 0.0 6.054654559420615E-5 0.0 2.690957581964718E-5 6.054654559420615E-5 8 0.0 6.054654559420615E-5 0.0 2.690957581964718E-5 8.072872745894153E-5 9 0.0 1.4800266700805949E-4 0.0 4.0364363729470766E-5 9.418351536876512E-5 10-11 0.0 1.4800266700805949E-4 0.0 9.081981839130924E-5 9.418351536876512E-5 12-13 0.0 1.4800266700805949E-4 0.0 1.345478790982359E-4 9.754721234622103E-5 14-15 0.0 2.320950914444569E-4 0.0 1.6482115189533897E-4 1.513663639855154E-4 16-17 0.0 2.3545878842191282E-4 0.0 2.0518551562480976E-4 1.6818484887279485E-4 18-19 0.0 2.556409702866482E-4 0.0 2.3882248539936873E-4 1.8163963678261846E-4 20-21 0.0 2.758231521513836E-4 0.0 2.859142430837513E-4 1.8163963678261846E-4 22-23 0.0 3.027327279710308E-4 0.0 5.079182435958405E-4 2.1191290957972152E-4 24-25 0.0 3.2964230379067794E-4 0.0 0.00118065763908702 2.4554987935428054E-4 26-27 0.0 3.430970917005015E-4 0.0 0.002616956248460688 2.489135763317364E-4 28-29 0.0 3.430970917005015E-4 0.0 0.00719831153175562 2.522772733091923E-4 30-31 0.0 3.834614554299723E-4 0.0 0.00807623644287161 2.556409702866482E-4 32-33 0.0 3.868251524074282E-4 0.0 0.01020882032657865 2.8927794006120716E-4 34-35 0.0 4.440080010241785E-4 0.0 0.01251295275613594 3.3973339472304564E-4 36-37 0.0 5.011908496409287E-4 0.0 0.01615247288574322 3.5991557658778103E-4 38-39 0.0 5.281004254605759E-4 0.0 0.02606528787830575 3.7000666752014873E-4 40-41 0.0 5.684647891900467E-4 0.0 0.03623374384115492 3.868251524074282E-4 42-43 0.0 6.021017589646056E-4 0.0 0.04284340840185577 3.901888493848841E-4 44-45 0.0 7.030126682882826E-4 0.0 0.05068754975328292 4.002799403172518E-4 46-47 0.0 7.669229108599446E-4 0.0 0.05915397504553942 4.2382581915944304E-4 48-49 0.0 7.669229108599446E-4 0.0 0.06834023149097146 4.4400800102417843E-4 50-51 0.0 8.274694564541507E-4 0.0 0.07759376187595264 4.4400800102417843E-4 52-53 0.0 8.341968504090626E-4 0.0 0.10419051387669642 4.675538798663697E-4 54-55 0.0 8.375605473865185E-4 0.0 0.1390081412903424 5.011908496409287E-4 56-57 0.0 8.409242443639743E-4 0.0 0.17668491113482593 5.112819405732964E-4 58-59 0.0 8.51015335296342E-4 0.0 0.20043933918961948 5.112819405732964E-4 60-61 0.0 8.913796990258128E-4 0.0 0.21821984141245135 5.2473672848312E-4 62-63 3.3636969774558973E-6 9.216529718229159E-4 0.0 0.23511905502718977 5.314641224380318E-4 64-65 6.727393954911795E-6 0.0010562008509211519 0.0 0.2416378997694993 5.348278194154877E-4 66-67 6.727393954911795E-6 0.0010662919418535195 0.0 0.24862093469469776 5.381915163929436E-4 68-69 6.727393954911795E-6 0.0011201110934928138 0.0 0.2560210680451007 5.381915163929436E-4 70-71 6.727393954911795E-6 0.001147020669312461 0.0 0.261379437330188 5.718284861675026E-4 72-73 6.727393954911795E-6 0.0011571117602448286 0.0 0.26551342091548125 6.189202438518851E-4 74-75 6.727393954911795E-6 0.0011772939421095642 0.0 0.2689477555294637 6.189202438518851E-4 76-77 6.727393954911795E-6 0.0012176583058390348 0.0 0.27186071711194054 6.189202438518851E-4 78-79 6.727393954911795E-6 0.0012378404877037702 0.0 0.27376456960118056 6.189202438518851E-4 80-81 6.727393954911795E-6 0.0012378404877037702 0.0 0.27451467402715324 6.424661226940764E-4 82-83 6.727393954911795E-6 0.0012412041846812261 0.0 0.27506968402843346 6.761030924686353E-4 84-85 6.727393954911795E-6 0.001251295275613594 0.0 0.275332052392675 6.794667894460913E-4 86-87 6.727393954911795E-6 0.001278204851433241 0.0 0.2755002372415478 6.828304864235472E-4 88 6.727393954911795E-6 0.0012983870332979764 0.0 0.2755069646355027 6.929215773559149E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 24420 0.0 51.197105 1 GTATCAA 45935 0.0 39.209843 1 ATCAACG 56820 0.0 31.112556 3 TCAACGC 57370 0.0 30.836596 4 CAACGCA 58000 0.0 30.457508 5 TATCAAC 58955 0.0 30.369545 2 AACGCAG 59825 0.0 29.623795 6 CTTATAC 15490 0.0 28.951748 1 ACGCAGA 67065 0.0 26.332615 7 CGCAGAG 67940 0.0 25.99365 8 TATACAC 19865 0.0 25.36783 3 GCAGAGT 75920 0.0 23.126528 9 TACATGG 48200 0.0 21.326187 2 GAGTACT 50800 0.0 20.632282 12-13 ACATGGG 49040 0.0 20.299543 3 GTACATG 53440 0.0 19.889814 1 CAGAGTA 75190 0.0 19.846128 10-11 AGAGTAC 71820 0.0 19.56513 10-11 ACACATC 24085 0.0 19.100006 6 TTATACA 25930 0.0 18.809063 2 >>END_MODULE