##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139150_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15031378 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.59676305126516 33.0 33.0 33.0 33.0 33.0 2 32.628992564753545 33.0 33.0 33.0 33.0 33.0 3 32.66525258030235 33.0 33.0 33.0 33.0 33.0 4 36.591089253427064 37.0 37.0 37.0 37.0 37.0 5 36.60600584989613 37.0 37.0 37.0 37.0 37.0 6 36.5847668124639 37.0 37.0 37.0 37.0 37.0 7 36.56369269670419 37.0 37.0 37.0 37.0 37.0 8 36.54622763129235 37.0 37.0 37.0 37.0 37.0 9 36.57986533237339 37.0 37.0 37.0 37.0 37.0 10-11 36.55629952889216 37.0 37.0 37.0 37.0 37.0 12-13 36.54813231361756 37.0 37.0 37.0 37.0 37.0 14-15 38.63152486751381 40.0 37.0 40.0 37.0 40.0 16-17 38.57055424326366 40.0 37.0 40.0 37.0 40.0 18-19 38.60466545382599 40.0 37.0 40.0 37.0 40.0 20-21 38.61624984678006 40.0 37.0 40.0 37.0 40.0 22-23 38.60955139500315 40.0 37.0 40.0 37.0 40.0 24-25 38.60904026441092 40.0 37.0 40.0 37.0 40.0 26-27 38.53236808970402 40.0 37.0 40.0 37.0 40.0 28-29 38.42038630052142 40.0 37.0 40.0 37.0 40.0 30-31 38.27723918100109 40.0 37.0 40.0 37.0 40.0 32-33 38.156061606349425 40.0 37.0 40.0 37.0 40.0 34-35 38.11110396612148 40.0 37.0 40.0 37.0 40.0 36-37 38.09504265634324 40.0 37.0 40.0 37.0 40.0 38-39 38.05372169760783 40.0 37.0 40.0 37.0 40.0 40-41 38.031415333321696 40.0 37.0 40.0 37.0 40.0 42-43 37.99317046860311 40.0 37.0 40.0 33.0 40.0 44-45 37.8892493339473 40.0 37.0 40.0 33.0 40.0 46-47 37.81201709970077 40.0 37.0 40.0 33.0 40.0 48-49 37.74271321329357 40.0 37.0 40.0 33.0 40.0 50-51 37.70872950620369 40.0 37.0 40.0 33.0 40.0 52-53 37.65898446427835 40.0 37.0 40.0 33.0 40.0 54-55 37.553556792310246 40.0 37.0 40.0 33.0 40.0 56-57 37.386071060922944 40.0 37.0 40.0 33.0 40.0 58-59 37.16267328238537 37.0 37.0 40.0 33.0 40.0 60-61 37.01344901393436 37.0 37.0 40.0 33.0 40.0 62-63 36.89477430895042 37.0 37.0 40.0 33.0 40.0 64-65 36.72427900770145 37.0 37.0 40.0 33.0 40.0 66-67 36.512096532611764 37.0 37.0 40.0 33.0 40.0 68-69 36.30712384652032 37.0 37.0 40.0 33.0 40.0 70-71 36.091290932618506 37.0 37.0 38.5 33.0 40.0 72-73 35.80276296443421 37.0 35.0 37.0 33.0 40.0 74-75 35.47470902135986 37.0 33.0 37.0 33.0 40.0 76-77 33.19309539092362 35.0 33.0 37.0 27.0 37.0 78-79 34.98118794631509 37.0 33.0 37.0 33.0 37.0 80-81 35.23201623411755 37.0 33.0 37.0 33.0 37.0 82-83 35.091082918079024 37.0 33.0 37.0 33.0 37.0 84-85 34.92409751331966 37.0 33.0 37.0 33.0 37.0 86-87 34.81024862196088 37.0 33.0 37.0 33.0 37.0 88-89 34.70612816052593 37.0 33.0 37.0 33.0 37.0 90-91 34.63749737477272 37.0 33.0 37.0 33.0 37.0 92-93 34.56983694204774 37.0 33.0 37.0 33.0 37.0 94-95 34.5651378131937 37.0 33.0 37.0 33.0 37.0 96-97 34.61033720941577 37.0 33.0 37.0 33.0 37.0 98-99 34.62568945637601 37.0 33.0 37.0 33.0 37.0 100 34.55876537703325 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 2.0 18 4.0 19 11.0 20 96.0 21 444.0 22 1806.0 23 5414.0 24 12967.0 25 26133.0 26 45966.0 27 74218.0 28 109531.0 29 152753.0 30 207079.0 31 276345.0 32 366799.0 33 494084.0 34 686495.0 35 1016610.0 36 1823194.0 37 4495933.0 38 5084267.0 39 151226.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.23068032955331 20.686195283372907 14.857580912247762 23.225543474826026 2 14.178304307837134 20.603067261202852 43.19251296875026 22.026115462209752 3 17.775823199697538 26.72438459896256 30.786746949397916 24.71304525194199 4 11.86691013072189 18.004504843435168 39.919642757945596 30.208942267897342 5 12.619621434575059 38.2161768535127 35.964008090276224 13.20019362163602 6 28.864705551280796 38.8038408720744 18.86658694898099 13.46486662766381 7 25.677971773446185 33.35693507275248 23.477368475465124 17.48772467833621 8 23.95922050526572 37.12813954914845 21.154141689471185 17.758498256114642 9 25.224194348648542 17.203133338806328 21.86427618279575 35.70839612974938 10-11 23.96172193926598 27.30063404699157 28.865410742780867 19.872233270961583 12-13 24.86277540808103 24.61773684028788 29.15225105149356 21.36723670013753 14-15 21.87527629836531 25.92567977298046 27.539814407331896 24.659229521322334 16-17 20.899557578819454 29.01550676192163 28.09571417870005 21.989221480558868 18-19 20.72630998967626 27.942215277933936 30.40933772006798 20.922137012321823 20-21 21.930168384317884 27.189273061220216 30.277615658499123 20.602942895962777 22-23 21.367959878613316 27.063352546781278 30.235256477922523 21.333431096682883 24-25 21.023610781140924 27.143657152211976 30.63808803183153 21.19464403481557 26-27 21.03659720888227 27.40591097780458 30.359286198863185 21.198205614449964 28-29 20.846478506819093 27.64510044977002 30.307276399545685 21.201144643865206 30-31 21.31095032342802 27.360298754405036 30.182388094011763 21.14636282815518 32-33 21.078840485830394 27.600578525879865 30.078905122417783 21.241675865871958 34-35 21.133769721354863 27.794969935911208 30.10926384824564 20.961996494488297 36-37 21.33272022950746 27.507255020745337 29.96097243398826 21.19905231575894 38-39 21.1259139658214 27.712595157814242 30.010741915930893 21.150748960433468 40-41 21.494080069524074 27.667707192778124 29.76682701878187 21.071385718915934 42-43 21.479551746701738 27.732581186754977 29.507365135915038 21.280501930628244 44-45 21.49741365133394 28.113696380265925 29.113958371273135 21.274931597127004 46-47 21.63742042662767 27.799656885821488 28.666776668446726 21.896146019104112 48-49 21.698108483652902 27.945662750214133 28.62136081345427 21.73486795267869 50-51 21.453889432814 28.180517050335418 28.449610389377728 21.915983127472856 52-53 21.609708697197032 28.206125476284704 28.297110659822227 21.887055166696033 54-55 21.78616272848083 28.016836116001713 28.286460494062027 21.910540661455432 56-57 21.858915273848588 28.206398094398516 28.037599897426812 21.897086734326084 58-59 21.63335645162657 28.333738745374998 28.379542349571317 21.65336245342711 60-61 21.793136410183646 28.411658562404373 28.012187665403033 21.78301736200895 62-63 21.746475207646224 28.31743622476178 27.965900741672506 21.970187825919485 64-65 21.70000719986189 28.3774854499463 27.97842749463329 21.944079855558524 66-67 21.851617669243176 28.43394091222855 27.712473900079086 22.001967518449188 68-69 21.89537833766428 28.228855511517747 27.92341484775221 21.95235130306576 70-71 21.909108757435924 27.699283136336394 28.014303043471806 22.377305062755873 72-73 22.019556228601214 27.821013271680556 28.053534518085765 22.105895981632468 74-75 21.73182982702257 28.019675903177994 27.97965784681409 22.268836422985355 76-77 21.798483114515303 28.035748616471906 27.857704047911607 22.308064221101183 78-79 21.975043071538014 28.012561452611727 27.771594701313695 22.240800774536567 80-81 21.855044245537616 27.824782011940698 27.90113883203591 22.419034910485777 82-83 22.07386357632245 27.683705091213383 28.015553995470505 22.22687733699366 84-85 22.49965874299606 27.61202384383007 27.74671666350618 22.14160074966769 86-87 21.807632784452295 27.87620336128483 27.903063659500276 22.4131001947626 88-89 22.20847185945022 27.678671807963983 27.927509064285978 22.185347268299818 90-91 22.21186164200922 27.602100666529854 28.021919657872445 22.16411803358848 92-93 22.207203130084817 27.626626076244953 27.92095169095762 22.245219102712614 94-95 22.026773963977185 27.713895092630242 27.936489579209884 22.322841364182686 96-97 21.952801970465792 27.853527684779998 28.182117044961828 22.01155329979238 98-99 23.146883773372654 29.74509444524355 28.31125379757144 18.79676798381236 100 22.40925646848535 30.613412875475056 21.910103593958947 25.06722706208065 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2555.0 1 2657.5 2 5098.0 3 7934.5 4 11449.0 5 20814.0 6 28716.5 7 32909.0 8 34341.0 9 31988.5 10 28026.0 11 24260.5 12 26415.5 13 36678.0 14 60802.0 15 94892.0 16 123757.0 17 140687.0 18 143878.5 19 135459.0 20 120139.5 21 103148.5 22 91374.5 23 90255.5 24 99285.5 25 118670.5 26 151279.0 27 189618.5 28 215235.0 29 239509.0 30 264032.5 31 286286.5 32 320445.0 33 357409.0 34 399586.5 35 444154.0 36 493932.5 37 534882.0 38 544050.0 39 548808.5 40 568716.0 41 581350.0 42 585361.0 43 597125.0 44 610840.5 45 623114.0 46 632018.0 47 639358.0 48 638187.5 49 624819.0 50 603766.0 51 573378.5 52 536624.5 53 498291.5 54 458569.5 55 417773.0 56 375974.0 57 330647.5 58 286732.0 59 248424.5 60 205488.5 61 156817.5 62 115520.0 63 83843.5 64 59552.5 65 42191.5 66 30015.5 67 22283.5 68 16292.5 69 11343.5 70 8462.0 71 5856.5 72 4161.0 73 2899.5 74 1923.5 75 1284.5 76 858.5 77 601.5 78 370.5 79 228.0 80 163.5 81 122.0 82 96.5 83 75.0 84 66.5 85 57.0 86 45.5 87 33.5 88 21.5 89 10.5 90 3.5 91 1.5 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 1.0 99 2.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 6.652750000698539E-6 2 3.5259575003702254E-4 3 6.652750000698539E-6 4 6.652750000698539E-6 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.007258150250762106 14-15 4.856507500509933E-4 16-17 0.0 18-19 0.0 20-21 0.0 22-23 1.3307169220783736E-5 24-25 4.325657742047253E-5 26-27 0.0 28-29 3.330667467092672E-6 30-31 6.670888004595975E-6 32-33 3.3438481753824295E-6 34-35 0.002710563936517117 36-37 0.031207187828725037 38-39 0.13660250028408005 40-41 0.18702498225239367 42-43 0.05820711151717807 44-45 0.00693426848750709 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 3.733965976699455E-6 62-63 0.012698542809251425 64-65 0.07703200463354976 66-67 0.20827239934639113 68-69 0.22510383937288267 70-71 0.08929365549012962 72-73 0.006197496314188178 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 237.0 20-21 1140.0 22-23 2473.0 24-25 4661.0 26-27 7558.0 28-29 16174.0 30-31 35857.0 32-33 44883.0 34-35 60213.0 36-37 84085.0 38-39 101628.0 40-41 113883.0 42-43 133813.0 44-45 157742.0 46-47 153535.0 48-49 129934.0 50-51 111224.0 52-53 102225.0 54-55 110767.0 56-57 118345.0 58-59 119402.0 60-61 119187.0 62-63 117281.0 64-65 118388.0 66-67 135470.0 68-69 121707.0 70-71 122553.0 72-73 116279.0 74-75 117376.0 76-77 108840.0 78-79 120318.0 80-81 126418.0 82-83 129639.0 84-85 138110.0 86-87 143970.0 88-89 158066.0 90-91 167137.0 92-93 171047.0 94-95 186129.0 96-97 477297.0 98-99 912699.0 100-101 9613688.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 77.0918976546509 #Duplication Level Percentage of deduplicated Percentage of total 1 86.28617621626738 66.51965065875658 2 8.309500862951353 12.811903801757579 3 2.582403287987064 5.972471099415982 4 1.1025871209650029 3.4000213393908076 5 0.5856798208884852 2.257558440516469 6 0.35383099669560586 1.636650179058046 7 0.2122207272476755 1.1452349009621365 8 0.14057111189088503 0.8669515016874069 9 0.09822014286335358 0.6814779481122158 >10 0.32245573386425014 3.717900079245679 >50 0.004324950587071217 0.21533427801538652 >100 0.0016942392166987127 0.2501845576671816 >500 1.8600578503104607E-4 0.10150617394747913 >1k 1.1158709273161285E-4 0.20392133103311333 >5k 3.719569735113852E-5 0.21923371043392906 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 6.652750000698539E-6 0.0 5 0.0 0.0 0.0 6.652750000698539E-6 0.0 6 0.0 0.0 0.0 1.9958250002095615E-5 0.0 7 0.0 0.0 0.0 1.9958250002095615E-5 0.0 8 0.0 0.0 0.0 1.9958250002095615E-5 0.0 9 0.0 6.652750000698539E-6 0.0 3.326375000349269E-5 6.652750000698539E-6 10-11 0.0 6.652750000698539E-6 0.0 3.991650000419123E-5 6.652750000698539E-6 12-13 0.0 6.652750000698539E-6 0.0 4.656925000488977E-5 6.652750000698539E-6 14-15 3.3263750003492694E-6 6.652750000698539E-6 0.0 5.987475000628685E-5 6.652750000698539E-6 16-17 6.652750000698539E-6 6.652750000698539E-6 0.0 7.318025000768392E-5 6.652750000698539E-6 18-19 6.652750000698539E-6 6.652750000698539E-6 0.0 1.3638137501432003E-4 6.652750000698539E-6 20-21 6.652750000698539E-6 6.652750000698539E-6 0.0 1.829506250192098E-4 6.652750000698539E-6 22-23 6.652750000698539E-6 6.652750000698539E-6 0.0 4.1912325004400794E-4 6.652750000698539E-6 24-25 6.652750000698539E-6 6.652750000698539E-6 0.0 0.0010977037501152588 6.652750000698539E-6 26-27 6.652750000698539E-6 6.652750000698539E-6 0.0 0.0030236748753174857 6.652750000698539E-6 28-29 6.652750000698539E-6 6.652750000698539E-6 0.0 0.009217385125967825 6.652750000698539E-6 30-31 6.652750000698539E-6 6.652750000698539E-6 0.0 0.010281825126079593 6.652750000698539E-6 32-33 6.652750000698539E-6 6.652750000698539E-6 0.0 0.012656856876328969 6.652750000698539E-6 34-35 6.652750000698539E-6 6.652750000698539E-6 0.0 0.015610677876639122 6.652750000698539E-6 36-37 6.652750000698539E-6 6.652750000698539E-6 0.0 0.020284234752129843 6.652750000698539E-6 38-39 6.652750000698539E-6 6.652750000698539E-6 0.0 0.03376935900354578 6.652750000698539E-6 40-41 6.652750000698539E-6 6.652750000698539E-6 0.0 0.04879792125512378 6.652750000698539E-6 42-43 6.652750000698539E-6 6.652750000698539E-6 0.0 0.058517589006144344 6.652750000698539E-6 44-45 6.652750000698539E-6 6.652750000698539E-6 0.0 0.0708018918824342 6.652750000698539E-6 46-47 6.652750000698539E-6 6.652750000698539E-6 0.0 0.0837980390087988 6.652750000698539E-6 48-49 6.652750000698539E-6 6.652750000698539E-6 0.0 0.09610895288509144 6.652750000698539E-6 50-51 6.652750000698539E-6 6.652750000698539E-6 0.0 0.10835333926137711 6.652750000698539E-6 52-53 6.652750000698539E-6 6.652750000698539E-6 0.0 0.13610195951429072 6.652750000698539E-6 54-55 6.652750000698539E-6 6.652750000698539E-6 0.0 0.16720023939255602 6.652750000698539E-6 56-57 6.652750000698539E-6 6.652750000698539E-6 0.0 0.1993762647709345 6.652750000698539E-6 58-59 6.652750000698539E-6 6.652750000698539E-6 0.0 0.22943338927409052 6.652750000698539E-6 60-61 6.652750000698539E-6 6.652750000698539E-6 0.0 0.24222330115043345 6.652750000698539E-6 62-63 6.652750000698539E-6 6.652750000698539E-6 0.0 0.25735498102702226 6.652750000698539E-6 64-65 6.652750000698539E-6 6.652750000698539E-6 0.0 0.2632360120276398 6.652750000698539E-6 66-67 6.652750000698539E-6 6.652750000698539E-6 0.0 0.26785634690312493 6.652750000698539E-6 68-69 6.652750000698539E-6 6.652750000698539E-6 0.0 0.27289247865365374 6.652750000698539E-6 70-71 6.652750000698539E-6 6.652750000698539E-6 0.0 0.27719015515410494 6.652750000698539E-6 72-73 6.652750000698539E-6 6.652750000698539E-6 0.0 0.28096891715450173 6.652750000698539E-6 74-75 6.652750000698539E-6 6.652750000698539E-6 0.0 0.28379966227979897 6.652750000698539E-6 76-77 6.652750000698539E-6 6.652750000698539E-6 0.0 0.2864042139050724 6.652750000698539E-6 78-79 6.652750000698539E-6 6.652750000698539E-6 0.0 0.2881705190302579 6.652750000698539E-6 80-81 6.652750000698539E-6 6.652750000698539E-6 0.0 0.28868610715531207 6.652750000698539E-6 82-83 6.652750000698539E-6 6.652750000698539E-6 0.0 0.2891218622803578 6.652750000698539E-6 84-85 6.652750000698539E-6 6.652750000698539E-6 0.0 0.2893879722803857 6.652750000698539E-6 86-87 6.652750000698539E-6 6.652750000698539E-6 0.0 0.28950106903039763 6.652750000698539E-6 88 6.652750000698539E-6 6.652750000698539E-6 0.0 0.2895077217803983 6.652750000698539E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 27315 0.0 48.538727 1 GTATCAA 48635 0.0 37.711823 1 ATCAACG 61570 0.0 29.480196 3 TCAACGC 62505 0.0 29.079763 4 TATCAAC 62985 0.0 29.052782 2 CAACGCA 63100 0.0 28.785471 5 AACGCAG 64565 0.0 28.239275 6 ACGCAGA 71685 0.0 25.318419 7 CGCAGAG 72875 0.0 24.893887 8 CGCTACG 480 0.0 24.80434 94 GCAGAGT 81265 0.0 22.224977 9 GTGGTAT 12605 0.0 21.083586 1 GAGTACT 54545 0.0 20.32834 12-13 TACATGG 50765 0.0 20.32441 2 ACATGGG 50575 0.0 19.924515 3 GTACATG 54605 0.0 19.5064 1 TGGTATC 13050 0.0 19.328606 2 CAGAGTA 80575 0.0 19.313135 10-11 AGAGTAC 77695 0.0 19.09353 10-11 GTACTTT 59690 0.0 18.457357 14-15 >>END_MODULE