##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139145_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9886403 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.67956030115301 33.0 33.0 33.0 33.0 33.0 2 32.692725453332216 33.0 33.0 33.0 33.0 33.0 3 32.65163356177166 33.0 33.0 33.0 33.0 33.0 4 36.60278283213824 37.0 37.0 37.0 37.0 37.0 5 36.633699840073284 37.0 37.0 37.0 37.0 37.0 6 36.608556013749386 37.0 37.0 37.0 37.0 37.0 7 36.5079846532657 37.0 37.0 37.0 37.0 37.0 8 36.551897287618154 37.0 37.0 37.0 37.0 37.0 9 36.604367938470645 37.0 37.0 37.0 37.0 37.0 10-11 36.588333087372625 37.0 37.0 37.0 37.0 37.0 12-13 36.57143715464563 37.0 37.0 37.0 37.0 37.0 14-15 38.644200777573 40.0 37.0 40.0 37.0 40.0 16-17 38.58188746705956 40.0 37.0 40.0 37.0 40.0 18-19 38.633431542290964 40.0 37.0 40.0 37.0 40.0 20-21 38.64982959154057 40.0 37.0 40.0 37.0 40.0 22-23 38.62754156600485 40.0 37.0 40.0 37.0 40.0 24-25 38.644132874212445 40.0 37.0 40.0 37.0 40.0 26-27 38.55216764164987 40.0 37.0 40.0 37.0 40.0 28-29 38.432299017746814 40.0 37.0 40.0 37.0 40.0 30-31 38.25393892666003 40.0 37.0 40.0 37.0 40.0 32-33 38.155992465772755 40.0 37.0 40.0 37.0 40.0 34-35 38.12477913801135 40.0 37.0 40.0 37.0 40.0 36-37 38.09231057925858 40.0 37.0 40.0 37.0 40.0 38-39 38.035396580426095 40.0 37.0 40.0 35.0 40.0 40-41 38.02183502647407 40.0 37.0 40.0 35.0 40.0 42-43 37.98562892239963 40.0 37.0 40.0 33.0 40.0 44-45 37.87564704517394 40.0 37.0 40.0 33.0 40.0 46-47 37.78891009681381 40.0 37.0 40.0 33.0 40.0 48-49 37.72676425975226 40.0 37.0 40.0 33.0 40.0 50-51 37.65113177379126 40.0 37.0 40.0 33.0 40.0 52-53 37.602706204899576 40.0 37.0 40.0 33.0 40.0 54-55 37.51498685740735 40.0 37.0 40.0 33.0 40.0 56-57 37.33582066192497 40.0 37.0 40.0 33.0 40.0 58-59 37.1285395705672 37.0 37.0 40.0 33.0 40.0 60-61 36.94732289933914 37.0 37.0 40.0 33.0 40.0 62-63 36.825915955670034 37.0 37.0 40.0 33.0 40.0 64-65 36.69966447720397 37.0 37.0 40.0 33.0 40.0 66-67 36.5270387069794 37.0 37.0 40.0 33.0 40.0 68-69 36.35506654389632 37.0 37.0 40.0 33.0 40.0 70-71 36.16363555523327 37.0 37.0 38.5 33.0 40.0 72-73 35.886532169309994 37.0 37.0 37.0 33.0 40.0 74-75 35.5493800700008 37.0 33.0 37.0 33.0 40.0 76-77 33.35624268945193 35.0 33.0 37.0 27.0 37.0 78-79 35.041666032883036 37.0 33.0 37.0 33.0 37.0 80-81 35.27328866594259 37.0 33.0 37.0 33.0 37.0 82-83 35.152553353233245 37.0 33.0 37.0 33.0 37.0 84-85 34.99304346474291 37.0 33.0 37.0 33.0 37.0 86-87 34.88771938994264 37.0 33.0 37.0 33.0 37.0 88-89 34.80365315405038 37.0 33.0 37.0 33.0 37.0 90-91 34.71954568238542 37.0 33.0 37.0 33.0 37.0 92-93 34.7053306686543 37.0 33.0 37.0 33.0 37.0 94-95 34.67745274526129 37.0 33.0 37.0 33.0 37.0 96-97 34.68554469561785 37.0 33.0 37.0 33.0 37.0 98-99 34.707373586495834 37.0 33.0 37.0 33.0 37.0 100 34.66315522562806 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 2.0 18 3.0 19 17.0 20 60.0 21 280.0 22 1034.0 23 2985.0 24 7175.0 25 14269.0 26 25554.0 27 41607.0 28 62365.0 29 88599.0 30 122518.0 31 167110.0 32 227147.0 33 312039.0 34 441090.0 35 664915.0 36 1221535.0 37 3000563.0 38 3361632.0 39 123903.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.694673350325026 21.124247223610773 14.9980043295832 23.183075096481005 2 14.119238199046322 20.702306874864586 43.43712075281079 21.7413341732783 3 17.26604886186097 27.512688640417416 31.876581591563845 23.344680906157773 4 11.627678097653726 18.917600154232044 38.93656155191747 30.51816019619676 5 12.285025431901312 38.148519552411486 35.99157711774213 13.574877897945075 6 27.731521767825974 38.922649622921504 18.93632092480956 14.409507684442968 7 24.57298170021999 33.968147970500496 23.207095644391597 18.251774684887923 8 23.750680606485496 36.521493206376476 21.707864832133588 18.019961355004444 9 24.88815193958814 16.456551487937524 21.80293479842972 36.85236177404461 10-11 23.579445426208096 26.922789815466757 28.9227487489636 20.575016009361544 12-13 24.779486247819847 24.572496974947242 29.153856176013665 21.49416060121925 14-15 21.87515014308035 25.948107719258463 27.437749604178585 24.7389925334826 16-17 20.504110544552958 29.24481735166976 28.127090307769166 22.123981796008113 18-19 20.393114664656096 27.444046130832415 31.087985185309563 21.07485401920193 20-21 21.28525845261378 26.54921279684903 31.05011688016176 21.11541187037543 22-23 20.98740858473075 27.058348103315737 30.939575238591345 21.01466807336217 24-25 20.886576246327262 27.174143202579653 31.23192724465449 20.70735330643859 26-27 20.95603935231916 27.44210634165049 31.124451193004106 20.47740311302625 28-29 20.31934180817298 27.33151999870283 31.15201304465911 21.197125148465084 30-31 20.644330214919083 27.304740453086 31.322491757209615 20.7284375747853 32-33 19.987447327976188 27.217142321078434 31.667812088222142 21.12759826272324 34-35 20.034453551423155 27.491252267859473 31.263005166497347 21.21128901422002 36-37 20.341729675137966 27.60841068431753 31.377340960914385 20.672518679630116 38-39 20.567127278672512 27.253645263952652 31.170100837243115 21.00912662013172 40-41 20.613472290611572 27.28432120385942 31.16539547464881 20.936811030880197 42-43 21.085389639174515 27.375177598830547 30.72269806913036 20.81673469286458 44-45 20.63863214961062 28.225441858056833 30.045379698599806 21.09054629373275 46-47 21.413198343120253 27.67279275122714 29.022233286044184 21.891775619608424 48-49 21.496087016401418 27.66189898654866 28.91627781990583 21.925736177144092 50-51 20.962073665341528 27.905081004366615 29.095858367622906 22.03698696266895 52-53 21.01969045363153 28.27682995716326 29.15702308646859 21.546456502736618 54-55 20.976267666603434 28.41991068461342 28.585037176709537 22.01878447207361 56-57 21.837351963751892 28.574938752335328 27.845823678926212 21.741885604986567 58-59 20.975518583500747 29.191662029669025 28.740049960784724 21.09276942604551 60-61 21.587967447565727 29.62804630541375 27.596066121279673 21.18792012574085 62-63 21.21772950403485 29.798175948089558 27.497635390411574 21.486459157464026 64-65 21.140508683408974 29.59840889279692 27.681840192436418 21.579242231357693 66-67 21.418697343457985 29.00115251442008 27.719063998433196 21.861086143688734 68-69 21.453637869476182 28.565397378263725 28.0077256359736 21.97323911628649 70-71 21.464299408942463 28.159530499700384 28.09947285513773 22.276697236219423 72-73 21.7239416621673 28.232653102354504 28.16041831295913 21.88298692251907 74-75 21.675514065839252 28.336943084495854 28.063399745770024 21.924143103894874 76-77 21.548514390216926 28.199698887068227 27.95160528561117 22.300181437103674 78-79 21.746040522521156 28.047224005691884 28.017777863200845 22.18895760858612 80-81 21.602321583118776 28.061838671970314 28.14192474888398 22.193914996026933 82-83 22.02717882876485 27.69204371171256 28.33115445694404 21.94962300257855 84-85 22.332011993845615 27.838254974546427 27.8921705489252 21.93756248268275 86-87 21.658783609875396 28.03362763348114 28.098915563244812 22.20867319339865 88-89 22.176420531248382 27.5870142471949 28.00570669454876 22.230858527007957 90-91 22.179297429141155 27.443000520099144 28.174152221249905 22.203549829509804 92-93 22.188967420557518 27.606227024701397 28.045728715665142 22.159076839075944 94-95 21.806579451468934 27.51827848909789 28.23869512662337 22.436446932809805 96-97 21.93959496198124 27.635424789128265 28.24427257393737 22.180707674953123 98-99 23.18318746760887 29.751433804349414 28.17262892636352 18.892749801678193 100 22.439071279992756 30.004317463798408 21.95935308016957 25.59725817603927 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2298.0 1 2499.0 2 5198.0 3 8163.0 4 12267.5 5 22908.0 6 31037.5 7 34262.5 8 34282.0 9 30816.0 10 26816.5 11 23194.0 12 25305.5 13 35803.0 14 60902.0 15 97222.0 16 127507.5 17 143538.0 18 144931.5 19 134056.0 20 115837.0 21 95467.0 22 79330.0 23 72442.0 24 74706.5 25 84688.5 26 99732.5 27 115427.0 28 130117.0 29 149094.5 30 168354.0 31 186901.5 32 210977.5 33 234640.5 34 259466.0 35 284639.5 36 309721.5 37 340825.0 38 358216.0 39 361531.5 40 370688.0 41 378012.5 42 387945.5 43 406026.5 44 425889.5 45 449168.5 46 474715.0 47 497375.5 48 518006.5 49 502832.5 50 461709.0 51 434708.0 52 402161.5 53 357200.5 54 307824.0 55 257254.0 56 213152.0 57 172456.5 58 136001.5 59 111639.0 60 88323.0 61 66099.5 62 49858.0 63 37219.5 64 26903.0 65 18698.5 66 13762.0 67 10694.5 68 8643.0 69 6796.5 70 4820.5 71 3364.5 72 2420.5 73 1923.5 74 1633.0 75 1179.5 76 759.0 77 500.5 78 293.5 79 162.0 80 109.5 81 73.5 82 55.5 83 39.5 84 27.5 85 19.5 86 12.5 87 9.0 88 6.5 89 4.5 90 3.5 91 2.5 92 2.0 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.0114902255147802E-5 2 4.1471099246105994E-4 3 1.0114902255147802E-5 4 1.0114902255147802E-5 5 1.0114902255147802E-5 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.006321813909467377 14-15 0.0 16-17 0.0 18-19 0.0 20-21 1.0115333515443055E-5 22-23 1.0116714000242295E-5 24-25 3.541754093179907E-5 26-27 0.0 28-29 1.0134134389364186E-5 30-31 1.0155439667319984E-5 32-33 1.0191337780731228E-5 34-35 0.0016837533513216875 36-37 0.03578684195940833 38-39 0.11626082795532021 40-41 0.15265483005563835 42-43 0.05404709913634413 44-45 0.001401413801871968 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.009582415618905169 64-65 0.07387459758153349 66-67 0.17823708635978022 68-69 0.19846219251059846 70-71 0.07889205785981594 72-73 0.005837733248484676 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 223.0 20-21 1081.0 22-23 2215.0 24-25 4026.0 26-27 7861.0 28-29 16248.0 30-31 32919.0 32-33 40270.0 34-35 50882.0 36-37 63437.0 38-39 69729.0 40-41 97167.0 42-43 119080.0 44-45 136326.0 46-47 145146.0 48-49 117389.0 50-51 99639.0 52-53 93378.0 54-55 104064.0 56-57 111883.0 58-59 112644.0 60-61 109500.0 62-63 104462.0 64-65 131412.0 66-67 158367.0 68-69 126410.0 70-71 113466.0 72-73 104083.0 74-75 102078.0 76-77 97061.0 78-79 103872.0 80-81 110257.0 82-83 104594.0 84-85 111234.0 86-87 121380.0 88-89 126461.0 90-91 123875.0 92-93 117793.0 94-95 129505.0 96-97 293617.0 98-99 526447.0 100-101 5544922.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 77.81751945274618 #Duplication Level Percentage of deduplicated Percentage of total 1 86.47067596923608 67.2893350932814 2 8.21438292017377 12.784458053658565 3 2.4586345132045833 5.739745171754724 4 1.1287244453596477 3.5133814593425807 5 0.5820293246989607 2.264603914841505 6 0.3464056751361245 1.6173858218068229 7 0.23143117173550914 1.2606579795949877 8 0.14087164882366723 0.8769825818140923 9 0.1060168546318338 0.742497178286852 >10 0.3170032321254882 3.6192679718952383 >50 0.0030895310730004945 0.16090646781495996 >100 6.529978076664737E-4 0.09075942428035477 >500 8.171599373506774E-5 0.04001888162795549 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0114902255147802E-5 2 0.0 0.0 0.0 0.0 1.0114902255147802E-5 3 0.0 0.0 0.0 0.0 1.0114902255147802E-5 4 0.0 0.0 0.0 0.0 1.0114902255147802E-5 5 0.0 0.0 0.0 0.0 2.0229804510295604E-5 6 0.0 0.0 0.0 0.0 2.0229804510295604E-5 7 0.0 0.0 0.0 0.0 2.0229804510295604E-5 8 0.0 0.0 0.0 0.0 2.0229804510295604E-5 9 0.0 0.0 0.0 0.0 2.0229804510295604E-5 10-11 0.0 0.0 0.0 0.0 2.0229804510295604E-5 12-13 0.0 0.0 0.0 5.057451127573901E-6 7.586176691360852E-5 14-15 0.0 0.0 0.0 1.0114902255147802E-5 1.1126392480662582E-4 16-17 0.0 0.0 0.0 2.0229804510295604E-5 1.4160863157206924E-4 18-19 0.0 0.0 0.0 3.540215789301731E-5 1.5678098495479093E-4 20-21 0.0 0.0 0.0 8.091921804118243E-5 1.6689588720993873E-4 22-23 0.0 0.0 0.0 1.3149372931692144E-4 1.8206824059266045E-4 24-25 0.0 0.0 0.0 2.6804490976141675E-4 1.8206824059266045E-4 26-27 0.0 0.0 0.0 4.501131503540772E-4 1.8712569172023435E-4 28-29 0.0 0.0 0.0 0.0011632137593419972 1.9218314284780825E-4 30-31 0.0 0.0 0.0 0.003079987736692506 1.9218314284780825E-4 32-33 0.0 0.0 0.0 0.006033539195195664 2.0735549623052994E-4 34-35 0.0 0.0 0.0 0.009250078112332666 2.1747039848567777E-4 36-37 0.0 0.0 0.0 0.01373097981136314 2.2252784961325167E-4 38-39 0.0 0.0 0.0 0.01956222096145585 2.2758530074082556E-4 40-41 0.0 0.0 0.0 0.026111620171664053 2.3770020299597336E-4 42-43 0.0 0.0 0.0 0.03177090798341925 2.57930007506269E-4 44-45 0.0 0.0 0.0 0.037951113261314555 2.731023608889907E-4 46-47 0.0 1.0114902255147802E-5 0.0 0.044844419148197784 2.8827471427171234E-4 48-49 0.0 1.0114902255147802E-5 0.0 0.05153542698997805 3.1356196990958186E-4 50-51 1.0114902255147802E-5 1.0114902255147802E-5 0.0 0.05746275971149467 3.540215789301731E-4 52-53 1.0114902255147802E-5 1.0114902255147802E-5 0.0 0.06300572614731566 4.045960902059121E-4 54-55 1.0114902255147802E-5 1.0114902255147802E-5 0.0 0.06795191335008294 4.349407969713555E-4 56-57 1.0114902255147802E-5 1.0114902255147802E-5 0.0 0.07245304485362372 4.501131503540772E-4 58-59 1.0114902255147802E-5 1.0114902255147802E-5 0.0 0.07673164850755124 4.5517060148165113E-4 60-61 1.0114902255147802E-5 1.0114902255147802E-5 0.0 0.0811164586351578 4.652855037367989E-4 62-63 1.0114902255147802E-5 1.0114902255147802E-5 0.0 0.08490954698083822 5.158600150125379E-4 64-65 1.0114902255147802E-5 1.0114902255147802E-5 0.0 0.08877849709343227 5.209174661401118E-4 66-67 1.0114902255147802E-5 1.0114902255147802E-5 0.0 0.09402813136385398 5.310323683952597E-4 68-69 1.0114902255147802E-5 1.0114902255147802E-5 0.0 0.10042074958910738 5.360898195228335E-4 70-71 1.0114902255147802E-5 1.0114902255147802E-5 0.0 0.1061154395587556 5.360898195228335E-4 72-73 1.0114902255147802E-5 1.0114902255147802E-5 0.0 0.11128415461113612 5.462047217779814E-4 74-75 1.0114902255147802E-5 1.0114902255147802E-5 0.0 0.11478896824254484 5.563196240331291E-4 76-77 1.0114902255147802E-5 1.0114902255147802E-5 0.0 0.11798021990404398 5.563196240331291E-4 78-79 1.0114902255147802E-5 1.0114902255147802E-5 0.0 0.12025101546032466 5.61377075160703E-4 80-81 1.0114902255147802E-5 1.0114902255147802E-5 0.0 0.12101974803171589 5.765494285434247E-4 82-83 1.0114902255147802E-5 1.0114902255147802E-5 0.0 0.1217530784452141 6.372388420743116E-4 84-85 1.0114902255147802E-5 1.0114902255147802E-5 0.0 0.1221020425730167 6.524111954570332E-4 86-87 1.0114902255147802E-5 1.0114902255147802E-5 0.0 0.12222847885120605 7.080431578603461E-4 88 1.0114902255147802E-5 1.0114902255147802E-5 0.0 0.12224870865571634 7.586176691360851E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 14685 0.0 51.657196 1 TATACAC 17645 0.0 44.74067 3 GGTATCA 26955 0.0 43.946568 1 TTATACA 19235 0.0 40.36673 2 GTATCAA 46705 0.0 34.275288 1 TACACAT 26725 0.0 29.554916 5 ATACACA 28060 0.0 28.800055 4 ACACATC 27535 0.0 27.90793 6 ATCAACG 58665 0.0 26.893034 3 TATCAAC 59560 0.0 26.795738 2 AACGCAG 59865 0.0 26.51387 6 CAACGCA 59540 0.0 26.504637 5 TCAACGC 60380 0.0 26.216614 4 ACATCTC 30195 0.0 25.463116 8 CACATCT 30450 0.0 25.103155 7 ACGCAGA 65840 0.0 23.97226 7 CGCAGAG 65990 0.0 23.936232 8 CATCTCC 33835 0.0 22.615734 9 GCAGAGT 71825 0.0 21.89554 9 GTACTAG 3255 0.0 21.583557 1 >>END_MODULE