##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139144_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8890312 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.70364144700434 33.0 33.0 33.0 33.0 33.0 2 32.619165559093986 33.0 33.0 33.0 33.0 33.0 3 32.63793734123167 33.0 33.0 33.0 33.0 33.0 4 36.507891286605016 37.0 37.0 37.0 37.0 37.0 5 36.5556342679537 37.0 37.0 37.0 37.0 37.0 6 36.569923755206794 37.0 37.0 37.0 37.0 37.0 7 36.50673947101069 37.0 37.0 37.0 37.0 37.0 8 36.58426329694616 37.0 37.0 37.0 37.0 37.0 9 36.56535856109437 37.0 37.0 37.0 37.0 37.0 10-11 36.55835695080218 37.0 37.0 37.0 37.0 37.0 12-13 36.56156887407326 37.0 37.0 37.0 37.0 37.0 14-15 38.393979761340205 40.0 37.0 40.0 37.0 40.0 16-17 38.462840955413036 40.0 37.0 40.0 37.0 40.0 18-19 38.56252918907683 40.0 37.0 40.0 37.0 40.0 20-21 38.562761829911956 40.0 37.0 40.0 37.0 40.0 22-23 38.548330612453796 40.0 37.0 40.0 37.0 40.0 24-25 38.52058371767984 40.0 37.0 40.0 37.0 40.0 26-27 38.424857850199174 40.0 37.0 40.0 37.0 40.0 28-29 38.36187030878996 40.0 37.0 40.0 37.0 40.0 30-31 38.41184840895468 40.0 37.0 40.0 37.0 40.0 32-33 38.34861279783651 40.0 37.0 40.0 37.0 40.0 34-35 38.20158280481607 40.0 37.0 40.0 37.0 40.0 36-37 38.10951337971704 40.0 37.0 40.0 37.0 40.0 38-39 38.04403386015383 40.0 37.0 40.0 37.0 40.0 40-41 38.26422066571989 40.0 37.0 40.0 37.0 40.0 42-43 38.23977906472241 40.0 37.0 40.0 37.0 40.0 44-45 38.149142368204906 40.0 37.0 40.0 37.0 40.0 46-47 38.0905771623017 40.0 37.0 40.0 37.0 40.0 48-49 37.94297623442955 40.0 37.0 40.0 33.0 40.0 50-51 37.950603642984134 40.0 37.0 40.0 33.0 40.0 52-53 38.00343697989774 40.0 37.0 40.0 33.0 40.0 54-55 37.99768952019453 40.0 37.0 40.0 33.0 40.0 56-57 37.7552501768796 40.0 37.0 40.0 33.0 40.0 58-59 37.42225446485922 40.0 37.0 40.0 33.0 40.0 60-61 37.12674602759333 37.0 37.0 40.0 33.0 40.0 62-63 37.11031245276122 37.0 37.0 40.0 33.0 40.0 64-65 36.91959672414978 37.0 37.0 40.0 33.0 40.0 66-67 36.49264243670342 37.0 37.0 40.0 33.0 40.0 68-69 36.15837671524618 37.0 37.0 37.0 33.0 40.0 70-71 35.689899561052954 37.0 35.0 37.0 33.0 40.0 72-73 35.363853900376995 37.0 33.0 37.0 33.0 37.0 74-75 35.0912462581399 37.0 33.0 37.0 33.0 37.0 76-77 33.00645210618171 33.0 33.0 37.0 27.0 37.0 78-79 34.63472667968587 37.0 33.0 37.0 33.0 37.0 80-81 34.782353068655354 37.0 33.0 37.0 33.0 37.0 82-83 34.6616621924304 37.0 33.0 37.0 33.0 37.0 84-85 34.519350137403634 37.0 33.0 37.0 33.0 37.0 86-87 34.65188477273389 37.0 33.0 37.0 33.0 37.0 88-89 34.51091474861661 37.0 33.0 37.0 33.0 37.0 90-91 34.49137128545944 37.0 33.0 37.0 33.0 37.0 92-93 34.54667659260549 37.0 33.0 37.0 33.0 37.0 94-95 34.578826168123285 37.0 33.0 37.0 33.0 37.0 96-97 34.62309389820934 37.0 33.0 37.0 33.0 37.0 98-99 34.62065934163303 37.0 33.0 37.0 33.0 37.0 100 34.511264893996575 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 0.0 13 0.0 14 1.0 15 1.0 16 2.0 17 11.0 18 21.0 19 41.0 20 110.0 21 251.0 22 704.0 23 2105.0 24 4999.0 25 10061.0 26 17991.0 27 28935.0 28 44898.0 29 64608.0 30 92010.0 31 127495.0 32 177687.0 33 251606.0 34 369347.0 35 572383.0 36 1072956.0 37 2809683.0 38 3106543.0 39 135861.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 62.02312832475714 12.519460792766418 7.405601446338604 18.051809436137837 2 9.727761350363453 26.111122609301297 30.945746639478944 33.215369400856304 3 33.76935857474502 24.517893693482716 31.527839689747637 10.184908042024626 4 9.848654338414033 16.947776067676372 53.64950674953891 19.554062844370687 5 10.532758640277038 42.4118458848065 32.387933335515484 14.667462139400971 6 17.87644999145699 36.91275817010226 19.651371026277932 25.559420812162813 7 19.50124129515829 37.35423878872179 29.747721986328713 13.396797929791207 8 16.213491719975632 17.7022021274394 21.097651016072327 44.986655136512645 9 15.563570772319352 29.65661947522202 35.47480673344198 19.305003019016656 10-11 26.871109810319364 20.577703009748138 21.00259810904274 31.548589070889747 12-13 35.925196014472235 21.654263661027993 25.31488781950059 17.105652504999178 14-15 30.020571831449782 20.705538793239203 34.91620429069306 14.357685084617952 16-17 14.925319831295008 32.14934414000318 35.03212260717059 17.89321342153121 18-19 16.46720047620376 36.67007974523278 23.156976942991427 23.705742835572025 20-21 19.030835516706677 29.06288396648815 21.301508145788365 30.604772371016807 22-23 19.466116116203604 22.52872410843659 29.5660890897755 28.4390706855843 24-25 30.725386453243676 22.069165865950175 22.371723185184123 24.83372449562203 26-27 21.191414155500574 21.35992311116342 40.985601370339204 16.463061362996807 28-29 17.90296945190139 34.25856191859122 26.51722850078847 21.321240128718927 30-31 17.32921548370589 27.120063534659927 27.61075988860306 27.93996109303112 32-33 25.303828641900044 23.494946168427067 26.765256731447472 24.435968458225418 34-35 29.511187143234253 24.251350677825975 23.901761061940157 22.335701116999616 36-37 23.3726028942942 20.70771779200501 37.744106768543034 18.175572545157756 38-39 22.15047110331378 30.208089320590204 29.561249364231845 18.080190211864174 40-41 18.1240736883062 32.58862587662264 30.98828903654981 18.29901139852134 42-43 17.251622054532287 28.644344070898587 19.22923334445256 34.87480053011657 44-45 20.052854884500466 23.753306979596 25.33857894863075 30.855259187272782 46-47 32.347366732315905 23.54976062252915 26.20539063000109 17.897482015153855 48-49 21.71970538238904 24.068439501154444 32.53984483740492 21.67201027905159 50-51 15.56047016412792 28.312848735204092 36.82933049124401 19.297350609423976 52-53 18.030149071829193 31.97570954699541 26.739835991536793 23.2543053896386 54-55 18.234428222079238 23.147203333081723 29.261928792359313 29.356439652479725 56-57 26.106147108151145 21.617863024899105 21.864492688230822 30.411497178718932 58-59 29.16508437492555 23.363405761380356 28.5445517850686 18.926958078625496 60-61 27.481841705282473 22.72353367860094 32.929628978782794 16.864995637333795 62-63 16.79087413389031 31.964555133032015 32.78709082837501 18.457479904702673 64-65 17.902835283201913 32.39462924025322 23.391677880775163 26.310857595769704 66-67 18.824084665138873 27.788307486026458 23.273195236733365 30.114412612101304 68-69 21.8306643006889 22.355971245296228 29.511975580793692 26.301388873221182 70-71 27.608790432305252 21.52665544121295 25.605114886466602 25.259439240015197 72-73 19.620884409243537 23.126688373422535 38.18844017367956 19.063987043654365 74-75 18.627126944158263 30.169339104177638 27.252731810679037 23.950802140985058 76-77 17.472280886182705 25.127809982774462 29.204518265790757 28.195390865252072 78-79 24.36389271023012 21.330759666183425 27.5927574025015 26.71259022108495 80-81 26.493563032257754 23.087009524435985 26.102087032460286 24.317340410845972 82-83 21.32446519939524 20.863107216696957 37.343860176919996 20.468567406987813 84-85 21.157636572739605 26.551140155464008 30.596134350757293 21.695088921039098 86-87 15.959411815038422 29.14985280368158 32.847327188541456 22.043408192738536 88-89 16.43587531846918 23.459824289649063 23.244612542215425 36.85968784966633 90-91 16.88598113681983 22.089397328579487 28.469428897402736 32.55519263719795 92-93 26.77999844396874 19.48204922812594 31.158963102796378 22.57898922510894 94-95 18.258318531081382 16.444890463335575 38.865836402500825 26.430954603082213 96-97 13.753932428727698 23.071058081727656 40.77161248256917 22.403397006975474 98-99 16.891990413639306 24.248390883470766 38.04062503184152 20.81899367104841 100 28.143825880588135 0.0 71.85617411941186 0.0 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 436.0 1 752.5 2 1963.5 3 4093.5 4 9068.5 5 17011.0 6 23152.5 7 26824.5 8 27990.0 9 26198.5 10 22650.0 11 18724.5 12 16917.0 13 16778.0 14 18509.5 15 21271.0 16 22819.5 17 23076.0 18 22253.5 19 20779.5 20 18949.0 21 16927.5 22 14969.0 23 13518.5 24 12614.0 25 12126.5 26 11993.0 27 12081.0 28 12406.0 29 13129.0 30 13837.0 31 14850.5 32 16117.0 33 17585.5 34 19995.5 35 25627.0 36 32801.5 37 41144.5 38 57454.0 39 96375.5 40 166111.5 41 284370.0 42 490614.0 43 816982.5 44 1221435.5 45 1606442.5 46 1816484.5 47 1704870.0 48 1295606.5 49 776809.5 50 402890.5 51 208735.0 52 106581.0 53 64886.5 54 39498.0 55 23207.5 56 16457.5 57 11899.0 58 8470.0 59 6739.5 60 4921.0 61 3330.0 62 2484.0 63 1896.5 64 1317.0 65 877.0 66 658.0 67 527.0 68 413.0 69 304.0 70 221.5 71 157.5 72 117.0 73 88.5 74 63.5 75 43.0 76 27.0 77 14.0 78 7.5 79 5.0 80 5.5 81 4.5 82 3.5 83 3.0 84 1.5 85 0.5 86 0.5 87 1.0 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.1248199163313953E-5 2 2.699567799195349E-4 3 1.1248199163313953E-5 4 1.1248199163313953E-5 5 1.1248199163313953E-5 6 1.1248199163313953E-5 7 1.1248199163313953E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.006732047199243401 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 3.388478180233606E-5 26-27 5.668930062579886E-6 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.00201071246635867 36-37 0.03914116432513339 38-39 0.12497986633021067 40-41 0.16243263658992857 42-43 0.05801468904535141 44-45 0.0016432301966747185 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.010745959626238663 64-65 0.08124766061602458 66-67 0.19218681056094888 68-69 0.21239228259897638 70-71 0.08714339866187545 72-73 0.006269945897431633 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2792.0 20-21 17889.0 22-23 13100.0 24-25 22932.0 26-27 154381.0 28-29 59075.0 30-31 35943.0 32-33 45648.0 34-35 33224.0 36-37 51528.0 38-39 56135.0 40-41 62825.0 42-43 47872.0 44-45 48631.0 46-47 63774.0 48-49 83546.0 50-51 157248.0 52-53 77357.0 54-55 130554.0 56-57 109699.0 58-59 74498.0 60-61 53326.0 62-63 75016.0 64-65 145130.0 66-67 156688.0 68-69 153987.0 70-71 123383.0 72-73 194808.0 74-75 221642.0 76-77 262181.0 78-79 308580.0 80-81 237039.0 82-83 329603.0 84-85 419719.0 86-87 297505.0 88-89 260964.0 90-91 252310.0 92-93 224540.0 94-95 263403.0 96-97 414352.0 98-99 2270202.0 100-101 877283.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.00774232969862 #Duplication Level Percentage of deduplicated Percentage of total 1 91.66952913850534 81.59297829044883 2 6.4504420527209945 11.482785682824849 3 1.2006225542583853 3.2059410883396486 4 0.34386237380499135 1.224256542580527 5 0.1394422367790302 0.6205719340552373 6 0.06667488158909446 0.35607484082071716 7 0.041008344972896835 0.2555042141900495 8 0.02581008970234805 0.18378382509864022 9 0.01595906754293296 0.12784325145152697 >10 0.04531008027251748 0.6035668812500378 >50 5.984268220484909E-4 0.0357560125813407 >100 5.257922097969362E-4 0.11991951145910523 >500 9.771056947534675E-5 0.057608756690533246 >1k 1.1725025013197788E-4 0.13340916820904647 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 1.1248199163313953E-5 0.0 10-11 0.0 0.0 0.0 1.1248199163313953E-5 0.0 12-13 0.0 0.0 0.0 1.1248199163313953E-5 0.0 14-15 0.0 0.0 0.0 1.687229874497093E-5 0.0 16-17 0.0 0.0 0.0 4.4992796653255813E-5 0.0 18-19 0.0 0.0 0.0 6.186509539822674E-5 0.0 20-21 0.0 0.0 0.0 1.2935429037811045E-4 0.0 22-23 0.0 0.0 0.0 2.699567799195349E-4 0.0 24-25 0.0 0.0 0.0 3.880628711343314E-4 0.0 26-27 0.0 0.0 0.0 5.849063564923255E-4 0.0 28-29 0.0 0.0 0.0 0.0014903863891390988 0.0 30-31 0.0 0.0 0.0 0.0027445605958486045 0.0 32-33 0.0 0.0 0.0 0.006822032792549913 0.0 34-35 0.0 0.0 0.0 0.011062603877119274 0.0 36-37 0.0 0.0 0.0 0.013824036771712848 0.0 38-39 0.0 0.0 0.0 0.01864389011319288 0.0 40-41 0.0 0.0 0.0 0.023615594143377647 0.0 42-43 0.0 0.0 0.0 0.030983164595348285 0.0 44-45 0.0 0.0 0.0 0.03797392037534791 0.0 46-47 0.0 0.0 0.0 0.044340401101783604 0.0 48-49 0.0 0.0 0.0 0.050003869380512184 0.0 50-51 0.0 0.0 0.0 0.05641534290360113 0.0 52-53 0.0 0.0 0.0 0.06295054661748653 0.0 54-55 0.0 0.0 0.0 0.06963197692049503 0.0 56-57 0.0 0.0 0.0 0.07732012104862011 0.0 58-59 0.0 0.0 0.0 0.08239305887127471 0.0 60-61 0.0 0.0 0.0 0.08544132084453279 0.0 62-63 0.0 0.0 0.0 0.08778657037008375 0.0 64-65 0.0 0.0 0.0 0.09236458742955253 0.0 66-67 0.0 0.0 0.0 0.10062076561542496 0.0 68-69 0.0 0.0 0.0 0.10933249586741162 0.0 70-71 0.0 0.0 0.0 0.11552462950681597 0.0 72-73 0.0 0.0 0.0 0.11969208729682378 0.0 74-75 0.0 0.0 0.0 0.12333650382573749 0.0 76-77 0.0 0.0 0.0 0.1269078070600897 0.0 78-79 0.0 0.0 0.0 0.1306703296802182 0.0 80-81 0.0 0.0 0.0 0.1317276604015697 0.0 82-83 0.0 0.0 0.0 0.13212697147186736 0.0 84-85 0.0 0.0 0.0 0.13236318365429695 0.0 86-87 0.0 0.0 0.0 0.13245316924760347 0.0 88 0.0 0.0 0.0 0.13248128974551174 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATACGG 65 5.385673E-5 178.38824 94 TGCGAGT 165 0.0021905047 70.27416 94 CTGACGG 170 0.0024657862 68.207275 94 CAGACGT 175 0.0027660707 66.25849 94 TTGTGGG 180 0.0030928042 64.41798 94 AACTAAT 180 0.0030928042 64.41798 94 AGCACGT 180 0.0030928042 64.41798 94 ACAATTG 185 0.0034474717 62.676952 94 TCAGGGG 330 8.186555E-6 58.561806 94 CACCAGG 220 0.006844859 52.70562 94 GCCAGGG 305 3.9099768E-4 50.689556 94 TATACGG 235 0.008883823 49.34143 94 CTTATCG 400 2.5565212E-5 48.313488 94 CGTACAT 170 9.4807547E-7 45.471516 94 CTTATGT 600 1.1920747E-7 45.092583 94 ATATGAT 350 7.7056844E-4 44.17233 94 CTTGGAT 380 0.0011550136 40.68504 94 GAGACAG 1155 0.0 40.156666 94 AGCGGCG 385 0.0012317025 40.156662 94 CTTGGTG 690 3.5720223E-7 39.210945 94 >>END_MODULE