##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139143_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8162561 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.86114590751603 33.0 33.0 33.0 33.0 33.0 2 32.912832626916966 33.0 33.0 33.0 33.0 33.0 3 33.586495463862384 33.0 33.0 33.0 33.0 37.0 4 36.742461342708495 37.0 37.0 37.0 37.0 37.0 5 36.75755721764285 37.0 37.0 37.0 37.0 37.0 6 36.751200879233856 37.0 37.0 37.0 37.0 37.0 7 36.74496925658504 37.0 37.0 37.0 37.0 37.0 8 36.73362232760037 37.0 37.0 37.0 37.0 37.0 9 36.72936753550754 37.0 37.0 37.0 37.0 37.0 10-11 36.71663672712523 37.0 37.0 37.0 37.0 37.0 12-13 36.956926569982144 37.0 37.0 37.0 37.0 38.5 14-15 38.939554203637805 40.0 40.0 40.0 37.0 40.0 16-17 38.88842202833155 40.0 38.5 40.0 37.0 40.0 18-19 38.93028658530086 40.0 40.0 40.0 37.0 40.0 20-21 38.964911303610975 40.0 40.0 40.0 37.0 40.0 22-23 38.99142635632158 40.0 40.0 40.0 37.0 40.0 24-25 38.971914340935164 40.0 40.0 40.0 37.0 40.0 26-27 38.87934978709814 40.0 40.0 40.0 37.0 40.0 28-29 38.800266440513546 40.0 38.5 40.0 37.0 40.0 30-31 38.73201510440151 40.0 37.0 40.0 37.0 40.0 32-33 38.683922587604854 40.0 37.0 40.0 37.0 40.0 34-35 38.65957995839118 40.0 37.0 40.0 37.0 40.0 36-37 38.62617278862821 40.0 37.0 40.0 37.0 40.0 38-39 38.554857378102476 40.0 37.0 40.0 37.0 40.0 40-41 38.52341030197737 40.0 37.0 40.0 37.0 40.0 42-43 38.46250122235206 40.0 37.0 40.0 37.0 40.0 44-45 38.37492125548602 40.0 37.0 40.0 37.0 40.0 46-47 38.289052079620724 40.0 37.0 40.0 37.0 40.0 48-49 38.243545962055336 40.0 37.0 40.0 37.0 40.0 50-51 38.16294244711605 40.0 37.0 40.0 37.0 40.0 52-53 38.09779704110876 40.0 37.0 40.0 37.0 40.0 54-55 38.02146870460978 40.0 37.0 40.0 37.0 40.0 56-57 37.90620920990868 40.0 37.0 40.0 33.0 40.0 58-59 37.77321957048916 40.0 37.0 40.0 33.0 40.0 60-61 37.59144767526536 38.5 37.0 40.0 33.0 40.0 62-63 37.396271173165886 37.0 37.0 40.0 33.0 40.0 64-65 37.177906050384536 37.0 37.0 40.0 33.0 40.0 66-67 36.94324381687295 37.0 37.0 40.0 33.0 40.0 68-69 36.68321584714343 37.0 37.0 40.0 33.0 40.0 70-71 36.4309422049146 37.0 37.0 38.5 33.0 40.0 72-73 36.181258790394104 37.0 37.0 37.0 33.0 40.0 74-75 35.72668865652338 37.0 35.0 37.0 33.0 40.0 76-77 34.485212426396814 35.0 33.0 37.0 30.0 37.0 78-79 35.60124355598017 37.0 35.0 37.0 33.0 37.0 80-81 35.71144280793554 37.0 37.0 37.0 33.0 37.0 82-83 35.623100904303506 37.0 37.0 37.0 33.0 37.0 84-85 35.515475167659616 37.0 37.0 37.0 33.0 37.0 86-87 35.426039432242376 37.0 33.0 37.0 33.0 37.0 88-89 35.3361574323433 37.0 33.0 37.0 33.0 37.0 90-91 35.27078888544834 37.0 33.0 37.0 33.0 37.0 92-93 35.19641883310839 37.0 33.0 37.0 33.0 37.0 94-95 35.15739541934817 37.0 33.0 37.0 33.0 37.0 96-97 35.12209678755295 37.0 33.0 37.0 33.0 37.0 98-99 35.08033808456963 37.0 33.0 37.0 33.0 37.0 100 34.995283270445206 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 1.0 18 3.0 19 8.0 20 35.0 21 164.0 22 562.0 23 1686.0 24 4147.0 25 8589.0 26 15352.0 27 25038.0 28 37324.0 29 53743.0 30 73806.0 31 100093.0 32 134614.0 33 183884.0 34 262228.0 35 402571.0 36 779784.0 37 2330782.0 38 3555842.0 39 192304.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.567327751089486 0.0 24.28773466324486 30.144937585665655 2 15.013292463601926 24.048149346035295 38.27707619705679 22.66148199330599 3 16.55666939954846 24.15966335078098 33.20248007797779 26.081187171692765 4 12.951863657499443 23.719240507724983 36.56623380124132 26.762662033534255 5 17.311137741747867 35.656292112791434 32.46689694911492 14.565673196345784 6 28.04368972479222 37.181962521561864 19.948876332915162 14.825471420730752 7 25.939999215932257 32.62491179237886 22.4621564803199 18.97293251136898 8 24.302948547643318 31.991368885329003 21.64759320022233 22.058089366805344 9 23.755363053335834 20.077546740538907 23.449601172965203 32.71748903316006 10-11 24.703239583753188 25.846685862439493 28.21763904735291 21.232435506454408 12-13 25.188895984973342 23.986987662328037 28.079195977830977 22.744920374867643 14-15 22.665956187034926 26.063192667105334 26.2101685978212 25.06068254803854 16-17 21.794869281834465 28.71786195533485 26.999755346391897 22.487513416438787 18-19 21.811280908729557 27.62546752333413 28.88232191357111 21.680929654365197 20-21 22.682154914949095 26.847056611066648 28.823645980446116 21.64714249353814 22-23 22.508852926702243 26.90803903882913 28.603332460747577 21.97977557372105 24-25 22.29945310825206 27.07323132874998 28.871034225870375 21.756281337127586 26-27 22.23740814769061 27.379303632091883 28.73753624060394 21.64575197961357 28-29 21.908662862215998 27.228798774562023 28.784288899114784 22.0782494641072 30-31 22.390406467792854 26.970545019459053 28.821315300599842 21.81773321214825 32-33 22.08987649054431 27.309663273805977 28.856142246952903 21.744317988696814 34-35 22.26280937860151 26.734526608082003 28.902278053132303 22.100385960184184 36-37 22.024434310318643 27.305513619530576 28.779713782907372 21.89033828724341 38-39 22.011898245782657 26.99180466505602 29.017396129075745 21.97890096008558 40-41 22.22905114455831 26.71778933919495 28.70365698843897 22.349502527807772 42-43 22.290342937651687 26.75882530488976 28.751911603250562 22.198920154207986 44-45 22.117294670328018 27.275338442132437 28.427606216631705 22.17976067090784 46-47 22.463218019878664 26.82389957402866 27.94032528720795 22.772557118884727 48-49 22.355945041463997 27.024102699820478 28.105849545858096 22.514102712857422 50-51 22.279289351276788 27.37901366064631 27.75905982958813 22.582637158488776 52-53 22.45663925158783 27.34329079814736 27.891157228925163 22.30891272133964 54-55 22.312855096511175 27.4268994286128 27.806884672708403 22.45336080216762 56-57 22.62602809156686 27.88309809743767 27.041448792491995 22.449425018503476 58-59 22.286023318761945 27.7398591720055 27.7210943661991 22.253023143033452 60-61 22.561715593864047 28.009112990968582 27.240738745666114 22.188432669501253 62-63 22.250451952137443 28.320860788301967 27.233851084598133 22.19483617496246 64-65 22.472815431996313 27.919255442806048 27.139124072626142 22.4688050525715 66-67 22.43197899751356 27.819086288718953 27.1868794851018 22.56205522866568 68-69 22.521416193126313 27.70658391587772 27.211185082941835 22.56081480805413 70-71 22.55529446703053 27.304636489703437 27.32308455428507 22.81698448898096 72-73 22.561730034824805 27.374773523963448 27.318297085639177 22.745199355572566 74-75 22.500167361486174 27.580593378756095 27.234041794379642 22.68519746537809 76-77 22.737447606227335 27.34599908612612 27.06708825994648 22.84946504770006 78-79 22.491502292518494 27.44417895384882 27.22508668612789 22.839232067504792 80-81 22.578440650834747 27.484169077060756 27.15156303695713 22.78582723514737 82-83 22.766113107287293 27.30872800927432 27.21249486498393 22.712664018454458 84-85 22.74270082052 27.346785394859886 27.251551639920248 22.658962144699867 86-87 22.618873278726703 27.408056929288175 27.250805729342385 22.722264062642736 88-89 22.754548939186076 27.189603998728117 27.227238408621773 22.828608653464038 90-91 22.784721636508728 27.277797421707227 27.249064119948358 22.688416821835688 92-93 22.751217286041282 27.269270486519048 27.325436163511906 22.654076063927768 94-95 22.683822940686653 27.233066244448718 27.354258743274407 22.72885207159023 96-97 22.71934128473446 27.506169779212726 27.4831398064458 22.29134912960702 98-99 23.858863420832165 29.532242799219215 26.965841386965096 19.643052392983524 100 22.833939311236882 29.936277423363055 21.37863136282805 25.851151902572017 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1960.0 1 1731.0 2 2346.5 3 3442.0 4 4844.5 5 8092.5 6 10815.0 7 12754.5 8 14314.5 9 14525.0 10 13468.5 11 12213.0 12 13229.5 13 17132.0 14 26489.5 15 40248.5 16 52364.0 17 59598.0 18 60528.0 19 56473.5 20 50339.0 21 43736.0 22 38993.5 23 38795.0 24 43285.5 25 51980.5 26 63473.5 27 76930.0 28 91613.0 29 107523.5 30 123541.0 31 139582.0 32 157178.0 33 174616.5 34 192024.5 35 209327.0 36 227068.0 37 243879.0 38 257714.5 39 268473.0 40 279216.5 41 289977.0 42 296897.0 43 304604.0 44 312924.0 45 324776.0 46 344834.0 47 363307.0 48 367769.5 49 364106.5 50 360431.0 51 347195.5 52 324931.0 53 302209.0 54 281907.5 55 264023.0 56 245508.0 57 223397.0 58 199938.5 59 175583.0 60 149245.5 61 125478.0 62 102418.0 63 80341.5 64 62602.5 65 47613.5 66 36172.5 67 27615.0 68 20456.0 69 14539.5 70 10251.5 71 7515.5 72 5453.5 73 3731.0 74 2490.5 75 1868.0 76 1493.0 77 947.5 78 571.0 79 418.0 80 266.0 81 155.5 82 112.0 83 73.5 84 43.0 85 24.0 86 16.5 87 14.0 88 9.0 89 4.5 90 2.5 91 2.5 92 3.0 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.5926374087740354E-4 2 5.022933366133496E-4 3 0.0029035005067649727 4 0.012937116182041396 5 0.008575739893398653 6 1.2251056990569504E-5 7 1.2251056990569504E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 6.125528495284752E-6 20-21 5.513137070554188E-5 22-23 6.555071174595239E-4 24-25 0.014693893957880608 26-27 0.058728152097638917 28-29 0.08290459734142289 30-31 0.06739294323295997 32-33 0.03082721836553694 34-35 0.0037545998479634078 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 2.6506345685422954E-5 54-55 5.276617311592868E-4 56-57 6.742588664535244E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 5.04648060965523E-5 70-71 0.0014280288400624456 72-73 0.01731889395686845 74-75 0.02258962532272485 76-77 0.0010652496146159448 78-79 6.821049759557996E-5 80-81 0.0013635604555211176 82-83 0.018801621213928067 84-85 0.05274929481079987 86-87 0.03818799317585468 88-89 0.00869519475194555 90-91 5.6769121685180024E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 152.0 20-21 534.0 22-23 1222.0 24-25 2787.0 26-27 3417.0 28-29 8566.0 30-31 17840.0 32-33 23896.0 34-35 33389.0 36-37 46439.0 38-39 52654.0 40-41 55652.0 42-43 68279.0 44-45 80464.0 46-47 78739.0 48-49 69488.0 50-51 59393.0 52-53 57910.0 54-55 66605.0 56-57 75191.0 58-59 76010.0 60-61 78787.0 62-63 79480.0 64-65 79762.0 66-67 90590.0 68-69 75409.0 70-71 67712.0 72-73 64910.0 74-75 65970.0 76-77 66678.0 78-79 69907.0 80-81 70629.0 82-83 68217.0 84-85 69406.0 86-87 72507.0 88-89 78008.0 90-91 82126.0 92-93 85803.0 94-95 108041.0 96-97 373807.0 98-99 1373767.0 100-101 4162418.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.0731909540361 #Duplication Level Percentage of deduplicated Percentage of total 1 89.0839344652197 74.89570633231253 2 7.5548999612941365 12.703290941690437 3 1.8855079991742458 4.755620221798168 4 0.6773909012336888 2.278016583597861 5 0.3137013324286975 1.318693601190672 6 0.17126344072255054 0.8639198373187341 7 0.09117575159916554 0.5365805462202083 8 0.055898774580515 0.37596706795234053 9 0.03583583206542864 0.2711549477010196 >10 0.12639455363354357 1.6722894265072321 >50 0.0033551619765238966 0.18854915087369734 >100 5.68085695883159E-4 0.09346648068933353 >500 7.37403759619444E-5 0.046744862147685355 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 7.350634194341702E-5 0.0 0.0 0.0 3 0.0 7.350634194341702E-5 0.0 0.0 0.0 4 0.0 9.800845592455603E-5 0.0 1.2251056990569504E-5 0.0 5 0.0 9.800845592455603E-5 0.0 1.2251056990569504E-5 0.0 6 3.675317097170851E-5 9.800845592455603E-5 0.0 1.2251056990569504E-5 0.0 7 3.675317097170851E-5 9.800845592455603E-5 0.0 1.2251056990569504E-5 0.0 8 3.675317097170851E-5 1.1025951291512554E-4 0.0 1.2251056990569504E-5 0.0 9 4.9004227962278015E-5 1.7151479786797305E-4 0.0 1.2251056990569504E-5 0.0 10-11 5.512975645756276E-5 1.7151479786797305E-4 0.0 1.2251056990569504E-5 0.0 12-13 6.125528495284751E-5 1.8376585485854256E-4 0.0 1.2251056990569504E-5 0.0 14-15 6.125528495284751E-5 2.4502113981139006E-4 0.0 3.675317097170851E-5 0.0 16-17 8.575739893398653E-5 2.5727219680195956E-4 0.0 9.188292742927128E-5 0.0 18-19 9.800845592455603E-5 2.5727219680195956E-4 0.0 3.307785387453766E-4 0.0 20-21 1.1025951291512554E-4 2.5727219680195956E-4 0.0 8.514484608445805E-4 0.0 22-23 1.2251056990569503E-4 2.940253677736681E-4 0.0 0.001384369439934354 0.0 24-25 1.3476162689626453E-4 3.552806527265156E-4 0.0 0.0023522029421893446 0.0 26-27 1.3476162689626453E-4 3.797827667076546E-4 0.0 0.0056109841016808324 0.0 28-29 1.4088715539154929E-4 3.797827667076546E-4 0.0 0.014750272616645682 0.0 30-31 1.4701268388683404E-4 4.2878699466993264E-4 0.0 0.016342910025419717 0.0 32-33 1.4701268388683404E-4 4.2878699466993264E-4 0.0 0.01960781671340649 0.0 34-35 1.653892693726883E-4 5.390465075850581E-4 0.0 0.024097829100450212 0.0 36-37 1.7151479786797305E-4 6.248039065190447E-4 0.0 0.0317363631340703 0.0 38-39 1.7151479786797305E-4 6.493060205001837E-4 0.0 0.04891847056334403 0.0 40-41 1.8376585485854256E-4 7.228123624436007E-4 0.0 0.0646365766822447 0.0 42-43 2.0826796883968157E-4 7.90193175891733E-4 0.0 0.07614644472488476 0.0 44-45 2.0826796883968157E-4 8.453229323492958E-4 0.0 0.09010039863714342 0.0 46-47 2.0826796883968157E-4 8.453229323492958E-4 0.0 0.10453826930052958 0.0 48-49 2.0826796883968157E-4 8.514484608445805E-4 0.0 0.1180266830471466 0.0 50-51 2.3277008282082055E-4 9.61707973759706E-4 0.0 0.13306485550307068 0.0 52-53 2.4502113981139006E-4 9.800845592455602E-4 0.0 0.16668788141368868 0.0 54-55 2.633977252972443E-4 9.86210087740845E-4 0.0 0.20639355712012444 0.0 56-57 2.8177431078309857E-4 0.0010168377302172688 0.0 0.24431057850593704 0.0 58-59 2.940253677736681E-4 0.0010168377302172688 0.0 0.26820626516604285 0.0 60-61 2.940253677736681E-4 0.0010658419581795469 0.0 0.2832628142074528 0.0 62-63 3.1240195325952234E-4 0.001084218543665401 0.0 0.293872229561286 0.0 64-65 3.185274817548071E-4 0.00123735675604752 0.0 0.2992381925231554 0.0 66-67 3.430295957359461E-4 0.0012496078130380893 0.0 0.3049900637802278 1.2251056990569504E-5 68-69 3.6140618122180036E-4 0.0012986120410003674 0.0 0.3105826712964228 1.2251056990569504E-5 70-71 3.797827667076546E-4 0.0013231141549815064 0.0 0.3151829431963816 1.2251056990569504E-5 72-73 4.0428488068879363E-4 0.0013231141549815064 0.0 0.31896851980646757 1.2251056990569504E-5 74-75 4.1653593767936313E-4 0.0013598673259532148 0.0 0.3219945308831383 1.2251056990569504E-5 76-77 4.1653593767936313E-4 0.0014272481394013471 0.0 0.3248551526904363 1.2251056990569504E-5 78-79 4.1653593767936313E-4 0.001457875781877771 0.0 0.3265335474981443 1.2251056990569504E-5 80-81 4.2878699466993264E-4 0.001457875781877771 0.0 0.3271583514046633 1.2251056990569504E-5 82-83 4.4103805166050214E-4 0.0014640013103730557 0.0 0.32750138100039927 1.2251056990569504E-5 84-85 4.4103805166050214E-4 0.00148237789585891 0.0 0.32774640214021067 1.2251056990569504E-5 86-87 4.4103805166050214E-4 0.0015191310668306185 0.0 0.3278382850676399 1.2251056990569504E-5 88 4.4103805166050214E-4 0.0015681352947928965 0.0 0.3278382850676399 1.2251056990569504E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12590 0.0 51.757423 1 CTTATAC 10280 0.0 39.65314 1 GTATCAA 23275 0.0 38.44366 1 ATCAACG 27610 0.0 31.889263 3 TATACAC 14160 0.0 30.866964 3 TCAACGC 28615 0.0 30.753809 4 CAACGCA 29135 0.0 30.216024 5 TATCAAC 29370 0.0 30.179186 2 AACGCAG 29385 0.0 30.000242 6 TTATACA 13980 0.0 29.60976 2 ACGCAGA 29820 0.0 29.59082 7 ACACATC 15825 0.0 25.46132 6 CGCAGAG 35495 0.0 24.812393 8 GTGGTAT 5610 0.0 24.370668 1 TACACAT 17840 0.0 23.859905 5 ACATCTC 17070 0.0 23.604301 8 TGGTATC 5515 0.0 23.112347 2 GCAGAGT 39630 0.0 22.117334 9 ATACACA 20865 0.0 21.955355 4 CACATCT 18960 0.0 21.09606 7 >>END_MODULE