##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139142_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8040239 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.86510251747492 33.0 33.0 33.0 33.0 33.0 2 32.91456634560241 33.0 33.0 33.0 33.0 33.0 3 33.58586069394206 33.0 33.0 33.0 33.0 37.0 4 36.74177546214733 37.0 37.0 37.0 37.0 37.0 5 36.756717555286606 37.0 37.0 37.0 37.0 37.0 6 36.75231420359519 37.0 37.0 37.0 37.0 37.0 7 36.74512673068549 37.0 37.0 37.0 37.0 37.0 8 36.73391835740206 37.0 37.0 37.0 37.0 37.0 9 36.72950070265324 37.0 37.0 37.0 37.0 37.0 10-11 36.718233749021636 37.0 37.0 37.0 37.0 37.0 12-13 36.95902298426701 37.0 37.0 37.0 37.0 38.5 14-15 38.935380216931364 40.0 40.0 40.0 37.0 40.0 16-17 38.886808775211776 40.0 38.5 40.0 37.0 40.0 18-19 38.931041913057555 40.0 40.0 40.0 37.0 40.0 20-21 38.96620601328681 40.0 40.0 40.0 37.0 40.0 22-23 38.99572371528002 40.0 40.0 40.0 37.0 40.0 24-25 38.976484318190266 40.0 40.0 40.0 37.0 40.0 26-27 38.89273343977102 40.0 40.0 40.0 37.0 40.0 28-29 38.82272520330574 40.0 38.5 40.0 37.0 40.0 30-31 38.75283962171009 40.0 37.0 40.0 37.0 40.0 32-33 38.71234591569376 40.0 37.0 40.0 37.0 40.0 34-35 38.68384713570754 40.0 37.0 40.0 37.0 40.0 36-37 38.647852189890344 40.0 37.0 40.0 37.0 40.0 38-39 38.59907662402194 40.0 37.0 40.0 37.0 40.0 40-41 38.5506992196308 40.0 37.0 40.0 37.0 40.0 42-43 38.48196687171628 40.0 37.0 40.0 37.0 40.0 44-45 38.392439867222116 40.0 37.0 40.0 37.0 40.0 46-47 38.307660239519215 40.0 37.0 40.0 37.0 40.0 48-49 38.25624609392748 40.0 37.0 40.0 37.0 40.0 50-51 38.20800342997599 40.0 37.0 40.0 37.0 40.0 52-53 38.14678146323941 40.0 37.0 40.0 37.0 40.0 54-55 38.07197827296812 40.0 37.0 40.0 37.0 40.0 56-57 37.968666959970705 40.0 37.0 40.0 33.0 40.0 58-59 37.83703585136662 40.0 37.0 40.0 33.0 40.0 60-61 37.665678831160214 40.0 37.0 40.0 33.0 40.0 62-63 37.46956423415392 37.0 37.0 40.0 33.0 40.0 64-65 37.24629618902152 37.0 37.0 40.0 33.0 40.0 66-67 37.00850856678801 37.0 37.0 40.0 33.0 40.0 68-69 36.744256837221485 37.0 37.0 40.0 33.0 40.0 70-71 36.48616940131509 37.0 37.0 40.0 33.0 40.0 72-73 36.231639700015165 37.0 37.0 37.0 33.0 40.0 74-75 35.767733981476724 37.0 35.0 37.0 33.0 40.0 76-77 34.52694518701939 35.0 33.0 37.0 30.0 37.0 78-79 35.63977971112943 37.0 35.0 37.0 33.0 37.0 80-81 35.73837754006386 37.0 37.0 37.0 33.0 37.0 82-83 35.64440760810655 37.0 37.0 37.0 33.0 37.0 84-85 35.53881430295917 37.0 37.0 37.0 33.0 37.0 86-87 35.44242895882968 37.0 33.0 37.0 33.0 37.0 88-89 35.34663024797416 37.0 33.0 37.0 33.0 37.0 90-91 35.27671431187065 37.0 33.0 37.0 33.0 37.0 92-93 35.20125534453089 37.0 33.0 37.0 33.0 37.0 94-95 35.156550629653125 37.0 33.0 37.0 33.0 37.0 96-97 35.11919616815146 37.0 33.0 37.0 33.0 37.0 98-99 35.07851952556267 37.0 33.0 37.0 33.0 37.0 100 34.99068557608208 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 5.0 19 7.0 20 46.0 21 154.0 22 559.0 23 1471.0 24 3671.0 25 7745.0 26 14024.0 27 23231.0 28 35685.0 29 51191.0 30 71312.0 31 97364.0 32 132063.0 33 180770.0 34 258831.0 35 396289.0 36 763004.0 37 2261341.0 38 3557901.0 39 183574.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.008090569604704 0.0 24.39485213411316 29.59705729628213 2 15.010087444418312 23.884252529758925 38.50923727825937 22.5964227475634 3 16.582135367822467 24.589416444237703 33.13837527767344 25.690072910266395 4 12.915538398597182 23.250857450562172 37.35684434807822 26.476759802762423 5 17.268834578119257 36.313281800502146 32.33468104809544 14.083202573283158 6 27.922839109633436 37.19788677923629 20.394816621744702 14.484457489385576 7 26.01244813742477 33.003484100410446 22.453586267771396 18.53048149439339 8 24.12061382752428 32.0760862954447 22.162152144979768 21.641147732051248 9 23.860310620119627 20.274173441859126 23.7072679058421 32.158248032179145 10-11 24.64051752690436 25.944577020658215 28.68686490538403 20.72804054705339 12-13 25.029933811669032 24.22056732393154 28.539512320467093 22.209986543932338 14-15 22.4833117522999 26.481694138694134 26.790155118523217 24.244838990482744 16-17 21.410259073144466 28.792004814782246 27.668823028768173 22.12891308330511 18-19 21.47475342461835 27.746693848279886 29.60328666846844 21.175266058633333 20-21 22.32965222517295 27.013722796927443 29.510664500584603 21.145960477315 22-23 22.175223887874704 26.85166181300542 29.285060176940952 21.68805412217892 24-25 21.80083590519937 27.050404177634586 29.543890622546293 21.60486929461975 26-27 21.778858137087536 27.300988182568602 29.35861065278032 21.561543027563545 28-29 21.70021847189568 27.162022095454503 29.37542487483777 21.76233455781205 30-31 21.95821162303148 27.137101043576994 29.344030633404362 21.560656699987167 32-33 21.795626859852497 27.354883676612808 29.273593727062497 21.5758957364722 34-35 21.86027810286258 27.22666994249307 29.24852078315578 21.664531171488573 36-37 21.902445867388227 27.317083402964883 29.16097514700105 21.619495582645843 38-39 21.73390157421027 27.50261506408745 29.159675838531772 21.603807523170506 40-41 22.034510535312933 27.256459796358513 28.867616438817763 21.8414132295108 42-43 21.910993306764773 27.336462989941694 28.862530652198544 21.890013051094993 44-45 22.024771499660844 27.643565492355766 28.500838818221837 21.830824189761557 46-47 22.13003184581586 27.477766657308162 28.156838888791608 22.235362608084376 48-49 22.0032887929584 27.691043179583414 28.159170213053475 22.14649781440471 50-51 22.078854799920585 27.9459616197213 27.83190699900554 22.14327658135258 52-53 22.25200173149665 27.740370604133247 27.811366816164394 22.196260848205707 54-55 22.185693683800935 27.657405348250503 27.910749532209334 22.246151435739232 56-57 22.163686090862267 27.99607905205011 27.657326017005285 22.182908840082334 58-59 22.171596359128216 27.719364675207096 27.77445275134374 22.334586214320943 60-61 22.343658588214506 27.781598996828137 27.836171745955728 22.038570669001622 62-63 22.04810500479158 27.97097371551508 27.769548680519907 22.211372599173433 64-65 22.18399680920578 27.72887159599114 27.67288418944492 22.41424740535816 66-67 22.091457714552803 27.851423533297297 27.801775859645435 22.255342892504466 68-69 22.17287293347949 28.001858957381813 27.596936761531705 22.22833134760699 70-71 22.212953667814343 27.646947632894385 27.50520508748141 22.634893611809854 72-73 22.19903544205249 27.69149224490433 27.52016956593862 22.58930274710456 74-75 22.114418043313137 27.861625839653726 27.627945888618775 22.396010228414365 76-77 22.33706327558439 27.50147973461774 27.486434639874187 22.67502234992368 78-79 22.181444293664804 27.548828710196894 27.45468709347335 22.815039902664957 80-81 22.429286556824394 27.84516833642381 27.319529135232845 22.40601597151895 82-83 22.477877889905944 27.47196095950013 27.42124552063367 22.62891562996025 84-85 22.354698667511048 27.504559587360284 27.477370573947614 22.66337117118106 86-87 22.299835717983253 27.716308815327217 27.434795696576593 22.54905977011294 88-89 22.607590096472457 27.56593527058502 27.4025946437325 22.42387998921003 90-91 22.533076002234882 27.616217770380146 27.451175743775135 22.39953048360984 92-93 22.4250187743681 27.38104046004917 27.488168547532588 22.70577221805014 94-95 22.591209388026044 27.526695568158555 27.54215673311181 22.339938310703594 96-97 22.767097523830934 27.59853696588857 27.669136052129552 21.965229458150944 98-99 23.554579860081617 29.751086361700636 27.30018892130321 19.39414485691454 100 22.68325922022876 30.022103172027958 21.648662235054932 25.645975372688344 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1850.0 1 1692.0 2 2430.5 3 3557.5 4 5011.5 5 8347.0 6 11116.0 7 13109.5 8 14715.5 9 14875.0 10 13760.0 11 12546.5 12 13581.5 13 17309.0 14 26362.0 15 40026.0 16 52178.0 17 59373.0 18 60465.0 19 56743.0 20 51154.0 21 45428.0 22 41640.0 23 42290.5 24 47788.5 25 57457.5 26 70121.5 27 84340.0 28 99990.5 29 117814.0 30 135268.5 31 151913.5 32 169850.0 33 187541.0 34 204730.0 35 219445.0 36 234997.0 37 252729.0 38 266474.5 39 277616.5 40 288565.0 41 296813.0 42 302739.5 43 310047.5 44 316187.5 45 320299.5 46 322029.5 47 323058.0 48 325841.5 49 326056.5 50 323316.5 51 315947.0 52 302241.5 53 287454.0 54 272371.0 55 253176.0 56 233941.0 57 212669.0 58 189179.0 59 165809.0 60 139591.0 61 114053.5 62 90508.0 63 70139.5 64 53549.5 65 40380.5 66 30776.5 67 23832.5 68 18434.0 69 13436.5 70 9411.5 71 6735.5 72 4809.0 73 3389.5 74 2309.0 75 1536.0 76 1030.5 77 657.0 78 405.5 79 260.5 80 183.5 81 130.5 82 89.0 83 59.5 84 40.5 85 27.5 86 21.5 87 17.5 88 14.0 89 9.5 90 6.0 91 4.5 92 4.0 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.7412417715443533E-4 2 5.721222963645732E-4 3 0.002723799628344381 4 0.012437441225316809 5 0.008755958622623034 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 6.218893096730155E-6 22-23 4.913343852035459E-4 24-25 0.01421468883113018 26-27 0.055025440086835894 28-29 0.0787794539547728 30-31 0.0640052935152443 32-33 0.028970229292333238 34-35 0.003900238422452632 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 1.3470487139288138E-5 54-55 4.208808493104003E-4 56-57 5.955730847242418E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 2.1649343703753845E-5 70-71 0.0010497177680696703 72-73 0.016180597255437964 74-75 0.022441740120189308 76-77 8.858809643249729E-4 78-79 7.5853363615007465E-6 80-81 0.0010504239534077939 82-83 0.018051809079602667 84-85 0.04886773811154003 86-87 0.03563601050941515 88-89 0.0086729107883716 90-91 5.683821359768191E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 148.0 20-21 500.0 22-23 1204.0 24-25 3063.0 26-27 3612.0 28-29 8719.0 30-31 17960.0 32-33 23747.0 34-35 32956.0 36-37 46215.0 38-39 53636.0 40-41 56384.0 42-43 67362.0 44-45 80423.0 46-47 78516.0 48-49 68566.0 50-51 59489.0 52-53 57269.0 54-55 60719.0 56-57 59188.0 58-59 44345.0 60-61 65067.0 62-63 64293.0 64-65 67897.0 66-67 72625.0 68-69 70224.0 70-71 67802.0 72-73 65491.0 74-75 66391.0 76-77 67199.0 78-79 70118.0 80-81 70790.0 82-83 68861.0 84-85 69123.0 86-87 73359.0 88-89 78408.0 90-91 82009.0 92-93 86971.0 94-95 109784.0 96-97 398989.0 98-99 1371093.0 100-101 4129724.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.93641305308131 #Duplication Level Percentage of deduplicated Percentage of total 1 88.69699192459922 74.44907350748977 2 7.851063459509813 13.179802108867383 3 1.9585821971335067 4.931890928910286 4 0.7315249253845765 2.456063131828172 5 0.30742731892519887 1.2902173212553425 6 0.15126553197698614 0.7618011703628633 7 0.09419599134481668 0.5534531546224103 8 0.05598131702125569 0.3759096759001287 9 0.03374705793278861 0.25493462945755274 >10 0.11621233852523966 1.5185440890472435 >50 0.002547071399416304 0.13894743136715226 >100 4.1237077044063876E-4 0.0622531250714895 >500 4.849547671678577E-5 0.02710972582024344 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.731232367595043E-5 0.0 0.0 1.243744122531681E-5 3 0.0 3.731232367595043E-5 0.0 1.243744122531681E-5 1.243744122531681E-5 4 0.0 3.731232367595043E-5 0.0 1.243744122531681E-5 2.487488245063362E-5 5 0.0 3.731232367595043E-5 0.0 2.487488245063362E-5 2.487488245063362E-5 6 0.0 3.731232367595043E-5 0.0 2.487488245063362E-5 2.487488245063362E-5 7 0.0 3.731232367595043E-5 0.0 3.731232367595043E-5 2.487488245063362E-5 8 0.0 4.974976490126724E-5 0.0 4.974976490126724E-5 2.487488245063362E-5 9 0.0 1.2437441225316808E-4 0.0 9.949952980253448E-5 2.487488245063362E-5 10-11 0.0 1.2437441225316808E-4 0.0 1.368118534784849E-4 2.487488245063362E-5 12-13 0.0 1.2437441225316808E-4 0.0 1.6168673592911853E-4 2.487488245063362E-5 14-15 0.0 1.8656161837975215E-4 0.0 1.9899905960506895E-4 4.353104428860883E-5 16-17 0.0 2.1143650083038578E-4 0.0 2.4874882450633617E-4 4.974976490126724E-5 18-19 0.0 2.1143650083038578E-4 0.0 4.0421683982279626E-4 4.974976490126724E-5 20-21 0.0 2.1143650083038578E-4 0.0 9.203706506734439E-4 4.974976490126724E-5 22-23 0.0 2.2387394205570257E-4 0.0 0.0017163668890937196 5.596848551392564E-5 24-25 0.0 2.3009266266836099E-4 0.0 0.0027113621871190643 6.218720612658404E-5 26-27 0.0 2.3631138328101937E-4 0.0 0.006187627009595113 6.218720612658404E-5 28-29 0.0 2.3631138328101937E-4 0.0 0.01540377095755487 6.218720612658404E-5 30-31 0.0 3.1093603063292024E-4 0.0 0.017039294478684026 6.218720612658404E-5 32-33 0.0 3.1093603063292024E-4 0.0 0.01976931282764107 6.218720612658404E-5 34-35 0.0 3.669045161468459E-4 0.0 0.02335129590053231 6.218720612658404E-5 36-37 0.0 4.2287300166077155E-4 0.0 0.02928395536500843 6.218720612658404E-5 38-39 0.0 4.353104428860883E-4 0.0 0.04400366705517088 6.218720612658404E-5 40-41 0.0 4.974976490126723E-4 0.0 0.05797713227181431 6.218720612658404E-5 42-43 0.0 5.969971788152068E-4 0.0 0.06815095919412345 6.218720612658404E-5 44-45 0.0 6.964967086177413E-4 0.0 0.08035830775677191 6.218720612658404E-5 46-47 0.0 6.964967086177413E-4 0.0 0.0929325608355672 6.840592673924245E-5 48-49 0.0 6.964967086177413E-4 0.0 0.10570581297396756 8.706208857721766E-5 50-51 0.0 7.897775178076174E-4 0.0 0.11987827725021608 8.706208857721766E-5 52-53 0.0 8.208711208709095E-4 0.0 0.14941098143973086 9.328080918987608E-5 54-55 0.0 8.333085620962263E-4 0.0 0.18432909767980776 9.949952980253448E-5 56-57 0.0 8.333085620962263E-4 0.0 0.2257830892837887 1.0571825041519287E-4 58-59 0.0 8.519647239342014E-4 0.0 0.44088241655503024 1.1193697102785129E-4 60-61 0.0 8.830583269974935E-4 0.0 0.5801568833961279 1.1193697102785129E-4 62-63 0.0 9.141519300607855E-4 0.0 0.5864937597004267 1.368118534784849E-4 64-65 0.0 0.0010198701804759783 0.0 0.5924139817236775 1.368118534784849E-4 66-67 0.0 0.0010198701804759783 0.0 0.5982409229377386 1.4303057409114332E-4 68-69 0.0 0.0010323076217012951 0.0 0.6043477065793691 1.492492947038017E-4 70-71 0.0 0.001044745062926612 0.0 0.6094221825992984 1.6168673592911853E-4 72-73 0.0 0.001044745062926612 0.0 0.6133959450707871 1.6168673592911853E-4 74-75 1.243744122531681E-5 0.0010571825041519288 0.0 0.6164804304946656 1.6168673592911853E-4 76-77 1.243744122531681E-5 0.0010882761072152209 0.0 0.6194529789475164 1.6168673592911853E-4 78-79 1.243744122531681E-5 0.0011131509896658545 0.0 0.621188001998448 1.6168673592911853E-4 80-81 1.243744122531681E-5 0.0011255884308911713 0.0 0.6217476868535874 1.6168673592911853E-4 82-83 1.243744122531681E-5 0.0011442445927291466 0.0 0.6220026543987063 1.6168673592911853E-4 84-85 1.243744122531681E-5 0.0011566820339544634 0.0 0.6222514032232127 1.6168673592911853E-4 86-87 1.243744122531681E-5 0.001200213078243072 0.0 0.6223509027530152 1.6168673592911853E-4 88 1.243744122531681E-5 0.0012934938874329483 0.0 0.6223571214736279 1.6168673592911853E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12975 0.0 49.46025 1 GTATCAA 23295 0.0 36.767883 1 ATCAACG 27500 0.0 30.59193 3 TCAACGC 28330 0.0 29.679815 4 AACGCAG 28880 0.0 29.18287 6 CAACGCA 29120 0.0 28.929638 5 ACGCAGA 29480 0.0 28.58892 7 TATCAAC 29665 0.0 28.587473 2 CGCAGAG 34065 0.0 24.71616 8 GTGGTAT 5985 0.0 22.886152 1 GCAGAGT 38615 0.0 21.760077 9 GTACATG 25280 0.0 21.12118 1 TACATGG 24845 0.0 20.759174 2 ACATGGG 24480 0.0 20.446869 3 TGGTATC 6290 0.0 20.43206 2 GAGTACT 24730 0.0 20.210503 12-13 CAGAGTA 37810 0.0 19.333654 10-11 AGAGTAC 35405 0.0 19.053219 10-11 CGAGACC 7400 0.0 18.673246 86-87 AGACCGA 7700 0.0 18.354124 88-89 >>END_MODULE