##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139139_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7483199 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.81394147075335 33.0 33.0 33.0 33.0 33.0 2 32.80847108302211 33.0 33.0 33.0 33.0 33.0 3 32.80859696501456 33.0 33.0 33.0 33.0 33.0 4 36.75523302266851 37.0 37.0 37.0 37.0 37.0 5 36.76989105862346 37.0 37.0 37.0 37.0 37.0 6 36.77134738766134 37.0 37.0 37.0 37.0 37.0 7 36.75895549483583 37.0 37.0 37.0 37.0 37.0 8 36.75927501059373 37.0 37.0 37.0 37.0 37.0 9 36.74662801296611 37.0 37.0 37.0 37.0 37.0 10-11 36.72300222137618 37.0 37.0 37.0 37.0 37.0 12-13 36.70757332525835 37.0 37.0 37.0 37.0 37.0 14-15 38.977229858513724 40.0 40.0 40.0 37.0 40.0 16-17 38.932513621514005 40.0 40.0 40.0 37.0 40.0 18-19 38.974491457463586 40.0 40.0 40.0 37.0 40.0 20-21 39.00923971030005 40.0 40.0 40.0 37.0 40.0 22-23 39.03722898423676 40.0 40.0 40.0 37.0 40.0 24-25 39.02514048113514 40.0 40.0 40.0 37.0 40.0 26-27 38.93648378129967 40.0 40.0 40.0 37.0 40.0 28-29 38.862234620279295 40.0 40.0 40.0 37.0 40.0 30-31 38.792667313896104 40.0 37.0 40.0 37.0 40.0 32-33 38.75277829265006 40.0 37.0 40.0 37.0 40.0 34-35 38.72826418217988 40.0 37.0 40.0 37.0 40.0 36-37 38.69503234402923 40.0 37.0 40.0 37.0 40.0 38-39 38.646966630551745 40.0 37.0 40.0 37.0 40.0 40-41 38.60835978673852 40.0 37.0 40.0 37.0 40.0 42-43 38.55121164651772 40.0 37.0 40.0 37.0 40.0 44-45 38.46595207346847 40.0 37.0 40.0 37.0 40.0 46-47 38.38165331226787 40.0 37.0 40.0 37.0 40.0 48-49 38.33706411563156 40.0 37.0 40.0 37.0 40.0 50-51 38.285826404433124 40.0 37.0 40.0 37.0 40.0 52-53 38.22544688720674 40.0 37.0 40.0 37.0 40.0 54-55 38.154657738054034 40.0 37.0 40.0 37.0 40.0 56-57 38.05275938466073 40.0 37.0 40.0 37.0 40.0 58-59 37.92354478671292 40.0 37.0 40.0 33.0 40.0 60-61 37.757726595084335 40.0 37.0 40.0 33.0 40.0 62-63 37.57411911621489 38.5 37.0 40.0 33.0 40.0 64-65 37.356727839022135 37.0 37.0 40.0 33.0 40.0 66-67 37.127435726715035 37.0 37.0 40.0 33.0 40.0 68-69 36.865776801928575 37.0 37.0 40.0 33.0 40.0 70-71 36.61122304626463 37.0 37.0 40.0 33.0 40.0 72-73 36.37268314151228 37.0 37.0 37.0 33.0 40.0 74-75 36.11216280195107 37.0 37.0 37.0 33.0 40.0 76-77 34.46632769831183 35.0 33.0 37.0 30.0 37.0 78-79 35.71333019055736 37.0 35.0 37.0 33.0 37.0 80-81 35.832139648441306 37.0 37.0 37.0 33.0 37.0 82-83 35.73927738389415 37.0 37.0 37.0 33.0 37.0 84-85 35.62909621318798 37.0 37.0 37.0 33.0 37.0 86-87 35.53330702420363 37.0 37.0 37.0 33.0 37.0 88-89 35.438862788145286 37.0 33.0 37.0 33.0 37.0 90-91 35.37756029349283 37.0 33.0 37.0 33.0 37.0 92-93 35.307313606115756 37.0 33.0 37.0 33.0 37.0 94-95 35.26842512626693 37.0 33.0 37.0 33.0 37.0 96-97 35.2296726008236 37.0 33.0 37.0 33.0 37.0 98-99 35.193830104216666 37.0 33.0 37.0 33.0 37.0 100 35.125497377539496 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 1.0 18 4.0 19 10.0 20 23.0 21 107.0 22 462.0 23 1294.0 24 3177.0 25 6654.0 26 12286.0 27 20400.0 28 30527.0 29 44870.0 30 62362.0 31 85473.0 32 115228.0 33 159337.0 34 229493.0 35 353586.0 36 688189.0 37 2093063.0 38 3420828.0 39 155824.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.97533701829926 20.116837732098265 14.353740960249754 23.554084289352723 2 14.585767397071761 20.93035344910646 41.94277073214276 22.541108421679017 3 17.93268784255923 26.385400888256953 30.816649840074994 24.865261429108823 4 12.249385668275035 18.341393889480965 38.92096538491662 30.48825505732738 5 13.116056394423639 37.76935145290176 35.605197871102625 13.509394281571977 6 29.402465442920867 37.99491367261515 18.95347163692961 13.649149247534375 7 26.04648092346602 33.06555124352567 22.99626135827739 17.891706474730928 8 24.334806544634187 36.4652069255408 21.20617131790829 17.993815211916722 9 25.527317929136988 16.78699176648917 21.232964671927075 36.452725632446764 10-11 24.02380987061817 26.766807885237316 28.871449229133155 20.337933015011362 12-13 25.126333002770608 24.490207997943124 28.89541625179285 21.48804274749342 14-15 22.280778581459614 25.774097414755374 26.805380960736176 25.139743043048835 16-17 21.56421337986602 28.946590889805286 27.41097089627043 22.07822483405827 18-19 21.511361651614504 27.872792104018618 29.44645064229883 21.169395602068047 20-21 22.406246469085342 26.930928811214578 29.435809366322633 21.227015353377446 22-23 22.1589874850951 27.07083573562521 29.24240067208041 21.527776107199283 24-25 21.872867299702804 27.248104240408104 29.309179228974656 21.569849230914436 26-27 21.746499239148264 27.504783586045278 29.251451397936297 21.49726577687016 28-29 21.697684944645626 27.45293166191386 29.282155501030527 21.56722789240999 30-31 22.04897742866556 27.246805997612555 29.212854232751823 21.491362340970056 32-33 21.766139397303675 27.4283251708008 29.19138385193063 21.614151579964897 34-35 21.872163576238492 27.359365901560572 29.242865746154855 21.52560477604608 36-37 21.815632917653662 27.533562956911734 29.01113841376346 21.639665711671142 38-39 21.714177419916584 27.410141522782087 29.14854504610401 21.727136011197313 40-41 21.933037303048675 27.284424410772708 29.066592293806405 21.715945992372216 42-43 21.93027617338098 27.378529606822326 28.862374393171603 21.82881982662509 44-45 21.93906426371878 27.582964356415374 28.59835104383077 21.879620336035075 46-47 22.14578813148537 27.521403566954994 28.123415288637148 22.209393012922483 48-49 22.085778216768443 27.686599056321736 28.03881299331795 22.188809733591867 50-51 22.055785601928825 27.824692062762907 27.968405790468896 22.151116544839365 52-53 22.14227529547912 27.793529402749467 27.966965155542034 22.09723014622938 54-55 22.135287691903518 27.79687044433361 27.825640581790605 22.242201281972264 56-57 22.26783876622502 27.91272440685407 27.636928205901178 22.182508621019732 58-59 22.058853417124112 28.077010887391136 27.83912040453843 22.02501529094632 60-61 22.279836701736276 28.13023218480501 27.605225107164205 21.984706006294513 62-63 22.114393085806228 28.26706132402717 27.58943247922841 22.029113110938194 64-65 22.114834165672413 28.13456983506686 27.576950109810127 22.1736458894506 66-67 22.247206253842904 28.072140754678777 27.407896816283795 22.272756175194523 68-69 22.219842610114597 27.947959053507333 27.540912748986422 22.291285587391645 70-71 22.204873373019876 27.695253380082736 27.62387593330643 22.47599731359096 72-73 22.29368930975957 27.687357337304313 27.572777332219832 22.446176020716283 74-75 22.189213493479528 27.814556865453817 27.546821185461944 22.449408455604708 76-77 22.33734974373258 27.73998131264203 27.47200690424267 22.450662039382717 78-79 22.33947421648132 27.69251316533078 27.41729788078164 22.550714737406267 80-81 22.289692437747643 27.749053559307313 27.468744854273865 22.492509148671182 82-83 22.363585757298708 27.71489595873204 27.558594430755782 22.362923853213466 84-85 22.50723012203531 27.638880182434573 27.451955902608944 22.401933792921174 86-87 22.347296697703914 27.70934300851967 27.525493005188935 22.41786728858748 88-89 22.46604866587377 27.602970255702548 27.496991138732536 22.433989939691145 90-91 22.50667507073615 27.627808455612808 27.48121075773507 22.38430571591597 92-93 22.515220676825365 27.505324693705173 27.58715968092973 22.392294948539732 94-95 22.384466933243438 27.58241667163653 27.61823571053676 22.414880684583274 96-97 22.437838550970195 27.664209548795654 27.673540027754733 22.22441187247942 98-99 23.591676741703342 29.52205588754948 27.889919811581255 18.996347559165926 100 22.462792334064705 30.530455641076397 21.706828378133352 25.299923646725542 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1760.0 1 1582.5 2 2249.0 3 3302.5 4 4655.5 5 7701.0 6 10195.5 7 12058.5 8 13419.0 9 13414.5 10 12282.5 11 11156.0 12 12287.0 13 16350.0 14 25719.5 15 38233.0 16 48612.5 17 55163.5 18 56668.0 19 53665.5 20 48330.0 21 42533.0 22 38926.5 23 39702.0 24 44935.5 25 53784.5 26 65206.5 27 78269.0 28 93094.5 29 110689.5 30 128295.5 31 144582.5 32 160617.0 33 176188.5 34 191411.5 35 205464.5 36 221286.5 37 237095.5 38 249128.5 39 257928.5 40 267106.5 41 275452.0 42 281167.0 43 287752.0 44 292644.0 45 299547.5 46 308707.0 47 315514.0 48 313556.5 49 307983.5 50 304529.5 51 294648.5 52 280981.5 53 265557.0 54 249702.5 55 232245.0 56 213508.5 57 194184.0 58 172425.0 59 150057.5 60 125881.0 61 102584.0 62 81357.5 63 62716.0 64 47627.0 65 35788.5 66 27053.5 67 20379.0 68 15508.5 69 11432.5 70 8238.5 71 5961.0 72 4146.5 73 2767.5 74 1790.0 75 1186.5 76 790.0 77 500.5 78 324.5 79 208.5 80 133.5 81 88.5 82 63.0 83 40.0 84 26.5 85 18.5 86 16.0 87 15.0 88 12.0 89 9.0 90 6.5 91 4.0 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 5.345307534919224E-5 4 0.014499146688468393 5 0.011064786597282794 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.009377153177835672 26-27 0.05406120241581235 28-29 0.08415348589812058 30-31 0.07156399405575509 32-33 0.034032073786368924 34-35 0.004659261224308416 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 3.6426984877264377E-4 56-57 8.818815884362982E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 3.1530612598813004E-5 72-73 0.015332308685068251 74-75 0.026385548724174736 76-77 0.0010550381765564187 78-79 0.0 80-81 8.287026808697468E-6 82-83 0.013847796713338965 84-85 0.053212813577776436 86-87 0.04121055116779918 88-89 0.01042535987840082 90-91 2.6306554488503244E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 114.0 20-21 431.0 22-23 1012.0 24-25 2364.0 26-27 2848.0 28-29 6680.0 30-31 16135.0 32-33 21110.0 34-35 28706.0 36-37 41478.0 38-39 49338.0 40-41 52480.0 42-43 62449.0 44-45 75021.0 46-47 73544.0 48-49 64557.0 50-51 55589.0 52-53 52291.0 54-55 57563.0 56-57 62953.0 58-59 62627.0 60-61 63873.0 62-63 64099.0 64-65 67153.0 66-67 73090.0 68-69 66666.0 70-71 63072.0 72-73 59954.0 74-75 60057.0 76-77 61519.0 78-79 64531.0 80-81 65403.0 82-83 63397.0 84-85 62958.0 86-87 66415.0 88-89 70749.0 90-91 74454.0 92-93 76895.0 94-95 84086.0 96-97 236078.0 98-99 440236.0 100-101 4809224.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.54862357999424 #Duplication Level Percentage of deduplicated Percentage of total 1 89.04527789686742 75.28655682478225 2 7.675097032656927 12.978377799080826 3 1.8808768980733699 4.770766585665378 4 0.661563633107865 2.237371783594012 5 0.29586971169699533 1.250768844149534 6 0.15491729745215665 0.7858826560987436 7 0.08863098222710265 0.5245539287691123 8 0.05261746626578303 0.3558987479230988 9 0.03278702250629825 0.24948878617744294 >10 0.11023352302864213 1.3983783689728084 >50 0.0018702702280053915 0.1043079041680117 >100 2.3313885000438822E-4 0.04137443305468832 >500 2.512703946076245E-5 0.01627333756402512 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.3363268837298059E-5 2 0.0 0.0 0.0 0.0 1.3363268837298059E-5 3 0.0 1.3363268837298059E-5 0.0 0.0 1.3363268837298059E-5 4 0.0 1.2026941953568253E-4 0.0 0.0 1.3363268837298059E-5 5 0.0 1.336326883729806E-4 0.0 1.3363268837298059E-5 1.3363268837298059E-5 6 0.0 1.336326883729806E-4 0.0 1.3363268837298059E-5 2.6726537674596118E-5 7 0.0 1.4699595721027865E-4 0.0 1.3363268837298059E-5 2.6726537674596118E-5 8 0.0 1.4699595721027865E-4 0.0 1.3363268837298059E-5 4.008980651189418E-5 9 0.0 2.5390210790866315E-4 0.0 2.6726537674596118E-5 4.008980651189418E-5 10-11 0.0 2.5390210790866315E-4 0.0 6.68163441864903E-5 4.008980651189418E-5 12-13 0.0 2.6058374232731214E-4 0.0 8.017961302378835E-5 4.008980651189418E-5 14-15 0.0 3.340817209324515E-4 0.0 1.0690615069838447E-4 7.349797860513932E-5 16-17 0.0 3.608082586070476E-4 0.0 1.4699595721027865E-4 8.017961302378835E-5 18-19 0.0 4.1426133395623986E-4 0.0 2.873102800019083E-4 8.017961302378835E-5 20-21 0.0 4.944409469800282E-4 0.0 3.8753479628164374E-4 8.017961302378835E-5 22-23 0.0 5.278491190732733E-4 0.0 8.619308400057248E-4 8.686124744243738E-5 24-25 0.0 5.946654632597636E-4 0.0 0.002245029164666074 9.354288186108641E-5 26-27 0.0 6.147103665157108E-4 0.0 0.0055123483953854495 9.354288186108641E-5 28-29 0.0 6.213920009343597E-4 0.0 0.01576197559359306 9.354288186108641E-5 30-31 0.0 6.81526710702201E-4 0.0 0.0175660168866283 9.354288186108641E-5 32-33 0.0 6.948899795394991E-4 0.0 0.02093356063362741 9.354288186108641E-5 34-35 0.0 7.683879581446384E-4 0.0 0.02501603926342197 1.0690615069838447E-4 36-37 0.0 8.285226679124797E-4 0.0 0.03197830232765426 1.0690615069838447E-4 38-39 0.0 8.485675711684267E-4 0.0 0.04866902510543954 1.0690615069838447E-4 40-41 0.0 9.487920874481622E-4 0.0 0.06606131949718295 1.0690615069838447E-4 42-43 0.0 9.755186251227583E-4 0.0 0.07785440424609849 1.0690615069838447E-4 44-45 0.0 0.0010690615069838447 0.0 0.09145153028804927 1.0690615069838447E-4 46-47 0.0 0.001149241120007633 0.0 0.10617785254675173 1.2026941953568253E-4 48-49 0.0 0.001149241120007633 0.0 0.12010906030963495 1.336326883729806E-4 50-51 0.0 0.0012828738083806137 0.0 0.1340269048036809 1.336326883729806E-4 52-53 0.0 0.0013096003460552098 0.0 0.16718117478901737 1.4699595721027865E-4 54-55 0.0 0.001322963614892508 0.0 0.206729768913001 1.603592260475767E-4 56-57 0.0 0.001336326883729806 0.0 0.24632513447791513 1.603592260475767E-4 58-59 0.0 0.001343008518148455 0.0 0.2707398266436587 1.603592260475767E-4 60-61 0.0 0.0013764166902417 0.0 0.2869695166465572 1.7372249488487477E-4 62-63 0.0 0.0014031432279162962 0.0 0.29862896870709976 1.8708576372217283E-4 64-65 0.0 0.0016436820669876613 0.0 0.3043217212317887 1.9376739814082187E-4 66-67 0.0 0.0016503637014063104 0.0 0.30968707366996384 2.0044903255947088E-4 68-69 0.0 0.0016837718734995554 0.0 0.3150390628393017 2.0044903255947088E-4 70-71 0.0 0.0017104984111741516 0.0 0.3202707825891039 2.071306669781199E-4 72-73 0.0 0.0017238616800114496 0.0 0.3242329917993628 2.27175570234067E-4 74-75 0.0 0.001763951486523344 0.0 0.32793461726729434 2.27175570234067E-4 76-77 0.0 0.0018708576372217282 0.0 0.33092798948684915 2.27175570234067E-4 78-79 0.0 0.0019243107125709205 0.0 0.3329792512533744 2.27175570234067E-4 80-81 0.0 0.0019243107125709205 0.0 0.3335805983510528 2.4053883907136506E-4 82-83 0.0 0.0019309923469895695 0.0 0.33410176583570744 2.672653767459612E-4 84-85 0.0 0.0019510372502455167 0.0 0.3343088965026856 2.672653767459612E-4 86-87 0.0 0.002017853594432007 0.0 0.3343690312124534 2.672653767459612E-4 88 0.0 0.0021782128204795837 0.0 0.33438907611570934 2.672653767459612E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12105 0.0 49.93037 1 GTATCAA 22170 0.0 36.782284 1 TCAACGC 26730 0.0 29.76372 4 ATCAACG 26855 0.0 29.62518 3 CAACGCA 27150 0.0 29.346294 5 TATCAAC 27585 0.0 29.101849 2 AACGCAG 27530 0.0 28.969429 6 ACGCAGA 31345 0.0 25.443563 7 CGCAGAG 31940 0.0 24.982822 8 CTTATAC 7670 0.0 23.54669 1 GCAGAGT 36370 0.0 21.846807 9 GTGGTAT 5710 0.0 21.629381 1 TGGTATC 5525 0.0 21.128767 2 GAGTACT 22500 0.0 20.372826 12-13 GTACATG 24545 0.0 20.213074 1 TACATGG 24365 0.0 19.980495 2 CAGAGTA 35705 0.0 19.363918 10-11 ACATGGG 24705 0.0 19.311749 3 TATACAC 11070 0.0 19.1038 3 AGAGTAC 33780 0.0 18.883833 10-11 >>END_MODULE