##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139137_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6875187 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.818034767636135 33.0 33.0 33.0 33.0 33.0 2 32.813948478783196 33.0 33.0 33.0 33.0 33.0 3 32.8151293921169 33.0 33.0 33.0 33.0 33.0 4 36.76332658297149 37.0 37.0 37.0 37.0 37.0 5 36.77588216873228 37.0 37.0 37.0 37.0 37.0 6 36.77841824520555 37.0 37.0 37.0 37.0 37.0 7 36.76676503490014 37.0 37.0 37.0 37.0 37.0 8 36.76728763886713 37.0 37.0 37.0 37.0 37.0 9 36.754535985712096 37.0 37.0 37.0 37.0 37.0 10-11 36.731609263864385 37.0 37.0 37.0 37.0 37.0 12-13 36.71568147891831 37.0 37.0 37.0 37.0 37.0 14-15 39.00170097191538 40.0 40.0 40.0 37.0 40.0 16-17 38.95550186489473 40.0 40.0 40.0 37.0 40.0 18-19 38.99961921035748 40.0 40.0 40.0 37.0 40.0 20-21 39.03176598915162 40.0 40.0 40.0 37.0 40.0 22-23 39.06072784632343 40.0 40.0 40.0 37.0 40.0 24-25 39.05103166728643 40.0 40.0 40.0 37.0 40.0 26-27 38.966720714941204 40.0 40.0 40.0 37.0 40.0 28-29 38.8977777410519 40.0 40.0 40.0 37.0 40.0 30-31 38.831171883280874 40.0 38.5 40.0 37.0 40.0 32-33 38.78846010743503 40.0 37.0 40.0 37.0 40.0 34-35 38.7631238477457 40.0 37.0 40.0 37.0 40.0 36-37 38.72746467996792 40.0 37.0 40.0 37.0 40.0 38-39 38.68205324417633 40.0 37.0 40.0 37.0 40.0 40-41 38.64190334630118 40.0 37.0 40.0 37.0 40.0 42-43 38.58251274620322 40.0 37.0 40.0 37.0 40.0 44-45 38.4938612324714 40.0 37.0 40.0 37.0 40.0 46-47 38.4030190740703 40.0 37.0 40.0 37.0 40.0 48-49 38.34920239479651 40.0 37.0 40.0 37.0 40.0 50-51 38.29749059129652 40.0 37.0 40.0 37.0 40.0 52-53 38.24415492828763 40.0 37.0 40.0 37.0 40.0 54-55 38.17602625817872 40.0 37.0 40.0 37.0 40.0 56-57 38.06662487691064 40.0 37.0 40.0 37.0 40.0 58-59 37.943276452237384 40.0 37.0 40.0 33.0 40.0 60-61 37.780814448952725 40.0 37.0 40.0 33.0 40.0 62-63 37.60435229291666 38.5 37.0 40.0 33.0 40.0 64-65 37.3923476077636 37.0 37.0 40.0 33.0 40.0 66-67 37.161536141055976 37.0 37.0 40.0 33.0 40.0 68-69 36.8983934843463 37.0 37.0 40.0 33.0 40.0 70-71 36.64413359528581 37.0 37.0 40.0 33.0 40.0 72-73 36.404632477274795 37.0 37.0 37.0 33.0 40.0 74-75 36.13634484330316 37.0 37.0 37.0 33.0 40.0 76-77 34.47391657332651 35.0 33.0 37.0 30.0 37.0 78-79 35.70996581662409 37.0 35.0 37.0 33.0 37.0 80-81 35.820762730034794 37.0 37.0 37.0 33.0 37.0 82-83 35.727557585531514 37.0 37.0 37.0 33.0 37.0 84-85 35.6260466312645 37.0 37.0 37.0 33.0 37.0 86-87 35.53304039310953 37.0 37.0 37.0 33.0 37.0 88-89 35.44167359342666 37.0 33.0 37.0 33.0 37.0 90-91 35.38995369698327 37.0 33.0 37.0 33.0 37.0 92-93 35.332502308657894 37.0 33.0 37.0 33.0 37.0 94-95 35.27482319303403 37.0 33.0 37.0 33.0 37.0 96-97 35.228232475401114 37.0 33.0 37.0 33.0 37.0 98-99 35.19384693321588 37.0 33.0 37.0 33.0 37.0 100 35.12342777727648 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 8.0 20 21.0 21 95.0 22 417.0 23 1208.0 24 3006.0 25 6032.0 26 11212.0 27 18602.0 28 28836.0 29 41212.0 30 57700.0 31 78354.0 32 105788.0 33 144773.0 34 208380.0 35 320903.0 36 622709.0 37 1938089.0 38 3156452.0 39 131387.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.58942876753752 20.290502643782634 14.56609107505003 23.55397751362981 2 14.492638527504779 21.15700998387389 41.69636404071627 22.653987447905052 3 17.667302140845457 26.64294947289388 31.065480312445594 24.624268073815074 4 12.327788475624065 18.63690737087509 39.08897021417982 29.94633393932103 5 13.17202791668982 37.75168180629327 35.58775722406463 13.488533052952278 6 29.046119036471296 38.16622006063253 19.092411595495513 13.695249307400656 7 25.852402269203733 33.183824672696176 23.182380348345433 17.78139270975466 8 24.39479827966861 36.00995871094124 21.509044044911068 18.086198964479074 9 25.578140638211007 16.75881688745339 21.31766015964366 36.345382314691946 10-11 23.880899530441862 26.75253778551769 29.026010492514605 20.340552191525845 12-13 25.038155325811502 24.507558848944765 28.934252988318722 21.52003283692502 14-15 22.274914122335872 25.791073028268173 26.771729990762434 25.162282858633517 16-17 21.568729694188683 28.983873456823794 27.354761405035237 22.09263544395229 18-19 21.614532084727294 27.817766993101422 29.349172611595876 21.218528310575408 20-21 22.45387739013028 26.907938779792197 29.348179840996767 21.290003989080756 22-23 22.14115270324289 27.03211615591803 29.135554028491445 21.69117711234763 24-25 21.994581171436973 27.177995763916368 29.15653974058626 21.670883324060398 26-27 21.874669361701788 27.325612850942633 29.194947581018354 21.604770206337232 28-29 21.772424777912374 27.212617852024273 29.279676243199166 21.735281126864187 30-31 21.954408247268677 27.015988798708783 29.277800891738554 21.751802062283986 32-33 21.68279152645182 27.368231164571476 29.09346378763553 21.855513521341177 34-35 21.959191267221243 27.31839000561803 29.126238695269063 21.596180031891667 36-37 21.921902159686827 27.32592065364129 29.054074522871858 21.698102663800025 38-39 21.765482892435607 27.31278102351546 29.00110616748745 21.920629916561488 40-41 22.042474238558107 27.141392949800146 29.01953760342136 21.796595208220385 42-43 22.012435388217046 27.218919919020724 28.786583634529244 21.982061058232986 44-45 21.95244601320295 27.42315585548744 28.589983020471543 22.034415110838065 46-47 22.19520166835467 27.33126062963609 28.22803476276902 22.24550293924022 48-49 22.104888293765793 27.612043988080938 28.038197926690735 22.244869791462534 50-51 22.02611211448798 27.77279059952719 27.898222609968442 22.302874676016383 52-53 22.082907715144213 27.627669324773574 27.901640585623678 22.38778237445854 54-55 22.18730797303549 27.410106558977247 28.03630476245951 22.366280705527753 56-57 22.22200549172539 27.291408101765686 27.91200287561491 22.574583530894017 58-59 21.836287477199214 27.25395223411552 28.237934551861482 22.67182573682378 60-61 22.156519969268235 27.52496168375046 28.217867872622275 22.10065047435903 62-63 21.644443419578458 27.834666675148316 28.178586962485397 22.34230294278783 64-65 21.525622881002366 28.04577311947531 27.892399391355738 22.536204608166585 66-67 21.674944989324203 28.409772993796818 27.489816550984457 22.42546546589452 68-69 21.71452512430533 28.334950796961607 27.369692274296114 22.58083180443695 70-71 21.740550944080717 27.806248197915806 27.34828046970998 23.104920388293497 72-73 22.028035061368616 27.34553473962748 27.291083663496536 23.335346535507366 74-75 22.027645187205316 27.415271474493697 27.51102248533739 23.046060852963603 76-77 22.366249662742526 27.264517440053552 26.9430726461136 23.426160251090323 78-79 22.56263877206087 27.280804734107576 26.52659726485708 23.629959228974474 80-81 22.40734973935867 27.65789234789629 26.641497106858107 23.293260805886934 82-83 22.38166971284991 27.44858287229097 26.72714533715288 23.442602077706244 84-85 22.52451903301836 27.7757155711029 26.63956502072258 23.06020037515616 86-87 22.89028720823898 27.65670032796983 26.754546629065736 22.698465834725457 88-89 22.697951659365323 27.67777142173358 27.077043160134373 22.54723375876672 90-91 22.662538859845167 27.35525256151204 26.926641886770074 23.05556669187272 92-93 22.679564197182277 26.854360162703312 27.182571632073614 23.283504008040797 94-95 22.006986233301298 27.27668604100754 27.753399087271703 22.96292863841946 96-97 22.156419062451977 27.215399641525583 27.891903319645618 22.73627797637682 98-99 23.371197124809456 29.017091286478713 28.2570925791439 19.354619009567934 100 22.259214830777616 30.125304536600122 21.969495915626773 25.645984716995486 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1359.0 1 1300.5 2 1899.5 3 2734.5 4 3781.5 5 6264.5 6 8408.5 7 9941.5 8 11192.5 9 11441.5 10 10815.5 11 10151.0 12 11112.0 13 14250.5 14 21742.0 15 32233.5 16 41239.0 17 47026.0 18 48383.0 19 45583.0 20 40674.5 21 35187.5 22 31189.0 23 30981.0 24 34692.5 25 41885.0 26 52283.0 27 64354.0 28 77622.0 29 93543.0 30 109919.5 31 124885.5 32 140078.0 33 155500.0 34 170166.0 35 183436.5 36 198101.0 37 213011.5 38 224261.0 39 233117.0 40 242049.0 41 250180.5 42 256300.0 43 262770.0 44 268393.5 45 273433.0 46 277520.5 47 281383.5 48 290749.0 49 292158.5 50 283163.5 51 275033.5 52 263486.0 53 247061.0 54 229878.5 55 211457.5 56 192358.5 57 172610.0 58 152002.0 59 131820.0 60 110418.0 61 90287.5 62 71595.5 63 54898.0 64 41917.0 65 31952.0 66 24359.5 67 18681.5 68 14256.5 69 10021.0 70 6705.5 71 4820.5 72 3323.5 73 2220.5 74 1493.0 75 989.0 76 659.5 77 417.0 78 253.0 79 165.0 80 105.0 81 66.5 82 51.5 83 41.5 84 27.5 85 16.5 86 13.5 87 13.5 88 10.5 89 7.0 90 5.0 91 4.5 92 4.0 93 2.5 94 2.0 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 8.727035351911155E-5 4 0.014690509509050445 5 0.010661528188251461 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.009239341056015942 26-27 0.052910526552896665 28-29 0.08222843500494986 30-31 0.0707894422270102 32-33 0.03335694686721152 34-35 0.004072357292808202 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 2.9591192228356164E-4 56-57 6.709931158446988E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 3.316082519387062E-5 72-73 0.014650995292342194 74-75 0.025537789842502594 76-77 0.0010160311790085566 78-79 0.0 80-81 1.7440907806227677E-5 82-83 0.012995437843102925 84-85 0.05019296933033114 86-87 0.03880721439273604 88-89 0.009530117771280273 90-91 6.466244494801093E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 100.0 20-21 402.0 22-23 923.0 24-25 2927.0 26-27 2835.0 28-29 5375.0 30-31 13063.0 32-33 17535.0 34-35 24222.0 36-37 34248.0 38-39 26488.0 40-41 44865.0 42-43 53464.0 44-45 64914.0 46-47 63086.0 48-49 55923.0 50-51 30911.0 52-53 10297.0 54-55 11507.0 56-57 13502.0 58-59 35837.0 60-61 60141.0 62-63 61146.0 64-65 63679.0 66-67 69774.0 68-69 61715.0 70-71 59729.0 72-73 57387.0 74-75 58582.0 76-77 59076.0 78-79 62075.0 80-81 62968.0 82-83 60785.0 84-85 62087.0 86-87 64140.0 88-89 68537.0 90-91 71985.0 92-93 74326.0 94-95 81054.0 96-97 233798.0 98-99 448155.0 100-101 4521624.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.4393250707164 #Duplication Level Percentage of deduplicated Percentage of total 1 89.42102125081246 76.40071702803604 2 7.624028620064159 13.02783719236214 3 1.7309615342989482 4.436765556416215 4 0.6066086543265562 2.0731293603086587 5 0.25471906055534466 1.0881512308247794 6 0.13688813504787783 0.7017377921207857 7 0.06738958445946003 0.4030404429108612 8 0.03969495813763949 0.2713208345592208 9 0.02763740643696907 0.21251892174117393 >10 0.08870073957405598 1.1367804557164878 >50 0.0018136672285292662 0.10035632851048701 >100 4.580982535173452E-4 0.08788878254046464 >500 5.219387888524636E-5 0.03007871754614584 >1k 2.6096925626960522E-5 0.029677356406562803 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.4545058919851925E-5 2 0.0 0.0 0.0 0.0 1.4545058919851925E-5 3 0.0 0.0 0.0 0.0 1.4545058919851925E-5 4 0.0 8.727035351911155E-5 0.0 0.0 1.4545058919851925E-5 5 0.0 1.0181541243896348E-4 0.0 0.0 1.4545058919851925E-5 6 4.3635176759555775E-5 1.0181541243896348E-4 0.0 0.0 1.4545058919851925E-5 7 4.3635176759555775E-5 1.0181541243896348E-4 0.0 0.0 1.4545058919851925E-5 8 4.3635176759555775E-5 1.3090553027866734E-4 0.0 0.0 1.4545058919851925E-5 9 4.3635176759555775E-5 2.181758837977789E-4 0.0 0.0 4.3635176759555775E-5 10-11 7.272529459925963E-5 2.181758837977789E-4 0.0 0.0 4.3635176759555775E-5 12-13 1.0181541243896348E-4 2.181758837977789E-4 0.0 0.0 4.3635176759555775E-5 14-15 1.163604713588154E-4 3.1271876677681644E-4 0.0 5.090770621948174E-5 5.81802356794077E-5 16-17 1.3090553027866734E-4 3.199912962367424E-4 0.0 1.0181541243896348E-4 5.81802356794077E-5 18-19 1.4545058919851925E-4 3.4180888461652026E-4 0.0 1.2363300081874137E-4 5.81802356794077E-5 20-21 1.4545058919851925E-4 3.6362647299629814E-4 0.0 1.3817805973859328E-4 7.272529459925963E-5 22-23 1.4545058919851925E-4 3.85444061376076E-4 0.0 4.2907923813563184E-4 7.999782405918558E-5 24-25 1.4545058919851925E-4 4.072616497558539E-4 0.0 0.0015272311865844523 8.727035351911155E-5 26-27 1.4545058919851925E-4 4.072616497558539E-4 0.0 0.004465333088394541 8.727035351911155E-5 28-29 1.4545058919851925E-4 4.072616497558539E-4 0.0 0.01284328702622925 8.727035351911155E-5 30-31 1.4545058919851925E-4 4.5816935597533566E-4 0.0 0.014690509509050445 8.727035351911155E-5 32-33 1.4545058919851925E-4 4.654418854352616E-4 0.0 0.018995846949326614 8.727035351911155E-5 34-35 1.4545058919851925E-4 5.381671800345212E-4 0.0 0.02442842645589131 8.727035351911155E-5 36-37 1.4545058919851925E-4 6.108924746337809E-4 0.0 0.03463905781762736 8.727035351911155E-5 38-39 1.4545058919851925E-4 6.254375335536328E-4 0.0 0.15953747876239582 8.727035351911155E-5 40-41 1.4545058919851925E-4 7.127078870727444E-4 0.0 0.2875849049633123 8.727035351911155E-5 42-43 1.4545058919851925E-4 7.417980049124482E-4 0.0 0.308529789807899 8.727035351911155E-5 44-45 1.4545058919851925E-4 8.508859468113377E-4 0.0 0.3392416817171664 8.727035351911155E-5 46-47 1.4545058919851925E-4 9.163387119506713E-4 0.0 0.3707608243964855 8.727035351911155E-5 48-49 1.5999564811837116E-4 9.236112414105972E-4 0.0 0.40001093788430775 8.727035351911155E-5 50-51 1.9635829541800098E-4 0.0010254266538495607 0.0 0.42798835871664287 8.727035351911155E-5 52-53 2.0363082487792695E-4 0.0010326991833094867 0.0 0.8652419199652315 1.163604713588154E-4 54-55 2.0363082487792695E-4 0.0010326991833094867 0.0 1.4635383735744205 1.4545058919851925E-4 56-57 2.0363082487792695E-4 0.0010326991833094867 0.0 2.1231567955897055 1.5272311865844522E-4 58-59 2.0363082487792695E-4 0.0010326991833094867 0.0 2.8060618569356732 1.599956481183712E-4 60-61 2.1817588379777886E-4 0.0010472442422293387 0.0 2.988813249734153 1.599956481183712E-4 62-63 2.327209427176308E-4 0.0010472442422293387 0.0 2.9944276424772154 1.599956481183712E-4 64-65 2.3999347217755677E-4 0.001163604713588154 0.0 2.999460232863484 1.599956481183712E-4 66-67 2.618110605573347E-4 0.0011999673608877838 0.0 3.0047764518986906 1.6726817757829716E-4 68-69 2.618110605573347E-4 0.0012363300081874137 0.0 3.0100563082865963 1.745407070382231E-4 70-71 2.690835900172606E-4 0.0012363300081874137 0.0 3.014936175554207 1.8908576595807504E-4 72-73 2.909011783970385E-4 0.0012363300081874137 0.0 3.019256058053403 2.181758837977789E-4 74-75 2.909011783970385E-4 0.0012508750671072655 0.0 3.022368700662251 2.181758837977789E-4 76-77 2.909011783970385E-4 0.0012654201260271175 0.0 3.0253577102702804 2.2544841325770486E-4 78-79 2.909011783970385E-4 0.0012799651849469695 0.0 3.0271903876941817 2.327209427176308E-4 80-81 2.909011783970385E-4 0.0012799651849469695 0.0 3.0281212714650527 2.618110605573347E-4 82-83 2.909011783970385E-4 0.0012872377144068953 0.0 3.028797616704826 3.0544623731689044E-4 84-85 2.909011783970385E-4 0.0012945102438668213 0.0 3.029059427765383 3.0544623731689044E-4 86-87 2.909011783970385E-4 0.0013236003617065253 0.0 3.029153970648362 3.1271876677681644E-4 88 3.0544623731689044E-4 0.001367235538466081 0.0 3.029153970648362 3.199912962367424E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10540 0.0 51.65566 1 GTATCAA 19835 0.0 38.59743 1 ATCAACG 23710 0.0 31.709827 3 TCAACGC 23780 0.0 31.616486 4 CAACGCA 24260 0.0 31.040188 5 TATCAAC 24595 0.0 30.883055 2 AACGCAG 24745 0.0 30.410694 6 ACGCAGA 28120 0.0 26.6997 7 CGCAGAG 28790 0.0 26.137987 8 GTGGTAT 5095 0.0 23.428251 1 GCAGAGT 32560 0.0 22.913807 9 TGGTATC 4915 0.0 22.888485 2 GAGTACT 19405 0.0 21.070906 12-13 ATCTCGT 10640 0.0 20.907753 94 TATCTCG 12085 0.0 20.573446 94 GTACATG 22640 0.0 20.274052 1 CAGAGTA 31880 0.0 19.97566 10-11 TACATGG 22755 0.0 19.624372 2 AGAGTAC 30250 0.0 19.093704 10-11 ACATGGG 23220 0.0 18.750593 3 >>END_MODULE