##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139135_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8638458 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.718929466346886 33.0 33.0 33.0 33.0 33.0 2 32.650469678732016 33.0 33.0 33.0 33.0 33.0 3 32.721440331133174 33.0 33.0 33.0 33.0 33.0 4 36.70141384029418 37.0 37.0 37.0 37.0 37.0 5 36.70895060206347 37.0 37.0 37.0 37.0 37.0 6 36.70041655582513 37.0 37.0 37.0 37.0 37.0 7 36.68629725351446 37.0 37.0 37.0 37.0 37.0 8 36.68052052808499 37.0 37.0 37.0 37.0 37.0 9 36.67687415971693 37.0 37.0 37.0 37.0 37.0 10-11 36.68288946939373 37.0 37.0 37.0 37.0 37.0 12-13 36.68071489147716 37.0 37.0 37.0 37.0 37.0 14-15 38.87992098821341 40.0 37.0 40.0 37.0 40.0 16-17 38.81665205757787 40.0 37.0 40.0 37.0 40.0 18-19 38.87376306049066 40.0 37.0 40.0 37.0 40.0 20-21 38.892313744969435 40.0 37.0 40.0 37.0 40.0 22-23 38.89641399819281 40.0 37.0 40.0 37.0 40.0 24-25 38.88750039620942 40.0 37.0 40.0 37.0 40.0 26-27 38.80498565520901 40.0 37.0 40.0 37.0 40.0 28-29 38.69977086150514 40.0 37.0 40.0 37.0 40.0 30-31 38.53058889164281 40.0 37.0 40.0 37.0 40.0 32-33 38.42313904148483 40.0 37.0 40.0 37.0 40.0 34-35 38.39120156888391 40.0 37.0 40.0 37.0 40.0 36-37 38.36501470152133 40.0 37.0 40.0 37.0 40.0 38-39 38.318792788753086 40.0 37.0 40.0 37.0 40.0 40-41 38.28886258690844 40.0 37.0 40.0 37.0 40.0 42-43 38.25749501484939 40.0 37.0 40.0 37.0 40.0 44-45 38.15911257416527 40.0 37.0 40.0 37.0 40.0 46-47 37.77868000562597 40.0 37.0 40.0 33.0 40.0 48-49 37.95155041542998 40.0 37.0 40.0 33.0 40.0 50-51 37.96388207289179 40.0 37.0 40.0 33.0 40.0 52-53 37.92923735924829 40.0 37.0 40.0 33.0 40.0 54-55 37.83500464575052 40.0 37.0 40.0 33.0 40.0 56-57 37.663344576996494 40.0 37.0 40.0 33.0 40.0 58-59 37.49338440140848 40.0 37.0 40.0 33.0 40.0 60-61 37.32073181927352 37.0 37.0 40.0 33.0 40.0 62-63 37.17930126468711 37.0 37.0 40.0 33.0 40.0 64-65 37.00304254720754 37.0 37.0 40.0 33.0 40.0 66-67 36.80620567994488 37.0 37.0 40.0 33.0 40.0 68-69 36.60700100180462 37.0 37.0 40.0 33.0 40.0 70-71 36.39660455785686 37.0 37.0 40.0 33.0 40.0 72-73 36.12270377389945 37.0 37.0 37.0 33.0 40.0 74-75 35.794084782160134 37.0 37.0 37.0 33.0 40.0 76-77 33.613182337452 35.0 33.0 37.0 30.0 37.0 78-79 35.29495997667221 37.0 33.0 37.0 33.0 37.0 80-81 35.506248953495515 37.0 33.0 37.0 33.0 37.0 82-83 35.33748303168012 37.0 33.0 37.0 33.0 37.0 84-85 35.190525863152 37.0 33.0 37.0 33.0 37.0 86-87 35.092458913467446 37.0 33.0 37.0 33.0 37.0 88-89 34.9250456854168 37.0 33.0 37.0 33.0 37.0 90-91 34.86631865555911 37.0 33.0 37.0 33.0 37.0 92-93 34.90527719304254 37.0 33.0 37.0 33.0 37.0 94-95 34.890912084642835 37.0 33.0 37.0 33.0 37.0 96-97 34.88638940806028 37.0 33.0 37.0 33.0 37.0 98-99 34.893549449475444 37.0 33.0 37.0 33.0 37.0 100 34.83826010156942 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 3.0 18 7.0 19 20.0 20 53.0 21 187.0 22 650.0 23 1821.0 24 4382.0 25 8991.0 26 16446.0 27 27233.0 28 41890.0 29 60788.0 30 83743.0 31 115858.0 32 159056.0 33 221956.0 34 324005.0 35 509684.0 36 1020052.0 37 2772645.0 38 3155370.0 39 113617.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.44815452017015 20.36959605522189 14.739100427414245 22.443148997193713 2 14.73099624456396 21.097514346099068 42.57890716243995 21.592582246897027 3 17.80432341049757 27.40669688965322 31.077595098569677 23.711384601279534 4 11.978260471949971 18.33080626195092 39.5389779055475 30.151955360551618 5 12.600200174614498 38.24522848869555 35.49386939196787 13.660701944722078 6 28.273298313194324 38.59837021838851 19.18722068220972 13.941110786207444 7 25.10520974923997 33.981817125232304 23.59206932533561 17.320903800192117 8 24.24157181756281 36.14156600634048 21.512346300693945 18.104515875402765 9 25.89693669865617 16.576905276381503 21.988854955363564 35.537303069598764 10-11 23.968723994857562 27.12453023972093 28.73664431450785 20.170101450913666 12-13 25.14054276304841 24.930920345623157 29.284181672298683 20.64435521902975 14-15 22.11018447968376 25.937771532836067 28.183004420464858 23.76903956701532 16-17 20.407617887359063 29.02104171832519 28.660855907385326 21.91048448693042 18-19 20.161007920743256 27.56685019095424 31.855307029947593 20.416834858354914 20-21 21.566962465761527 26.643543597098287 31.69179103825349 20.097702898886695 22-23 21.214647502868168 26.62528602072305 31.518282459668807 20.64178401673998 24-25 20.583171732039673 26.8512907161432 31.81675368720205 20.748783864615078 26-27 20.61469951506002 27.21885096278342 31.5834208573433 20.583028664813263 28-29 20.434070550424877 27.581121414350886 31.44674894168912 20.53805909353512 30-31 20.89894657159383 27.33501168864973 31.27925903485523 20.486782704901213 32-33 20.5781977065308 27.56987613231978 31.209676864334625 20.64224929681479 34-35 20.524976735062808 27.79858856646976 31.13880900863363 20.537625689833803 36-37 20.746687573574523 27.700356246118485 31.028563638495093 20.5243925418119 38-39 20.750644894650865 27.804577162439763 30.91861165071044 20.52616629219893 40-41 20.99570504329829 27.820667641810964 30.581112397323945 20.602514917566804 42-43 21.05276353440605 28.00513712162645 30.07251548485355 20.86958385911395 44-45 21.11553036511206 28.38428038736384 29.526634425223413 20.973554822300688 46-47 21.260739575176967 28.394281095876593 28.799783442539763 21.545195886406677 48-49 21.55158523148599 28.50062250734897 28.558947919810386 21.388844341354655 50-51 21.320679102489542 28.605938643529967 28.357785101958793 21.715597152021697 52-53 21.483580564757006 28.617432471899484 28.097277935122527 21.801709028220984 54-55 21.556030264346244 28.58767607960702 28.129618664202333 21.7266749918444 56-57 21.7046883046424 28.63767606221742 27.929948553243854 21.727687079896327 58-59 21.578362362382737 28.703613614264473 28.1582437703562 21.559780252996593 60-61 21.783403302389683 28.54613664094259 28.005329373138206 21.665130683529526 62-63 21.766469084168342 28.52302694283822 27.840206580223214 21.870297392770226 64-65 21.590099388972533 28.601776687827567 27.985568507337334 21.822555415862567 66-67 21.828883701505735 28.518784609819413 27.70327376598568 21.949057922689175 68-69 21.79542135262642 28.353999290741143 27.872592141550573 21.977987215081864 70-71 21.715951119108514 27.989710913670407 27.94433894080711 22.34999902641396 72-73 21.881247902124596 28.063035714259843 28.096500312843293 21.959216070772268 74-75 21.755665548978943 28.202856545549327 27.983114939738062 22.058362965733668 76-77 21.72781348610161 28.09367375727772 27.779048966563103 22.39946379005757 78-79 21.902566117372537 28.00338044104511 27.83092597331323 22.263127468269122 80-81 21.839449070823623 28.011107875029634 27.957172338381316 22.192270715765428 82-83 22.175492461124655 27.73370451877561 28.060920803002364 22.02988221709737 84-85 22.5406620628754 27.73395969410346 27.730074385292554 21.99530385772859 86-87 21.88106270209007 27.90443014767159 27.929930997699927 22.284576152538417 88-89 22.211046979100665 27.58844765983287 27.837459846724393 22.363045514342065 90-91 22.439229994214273 27.45909552301874 27.89903862826886 22.20263585449813 92-93 22.380013822066356 27.47427779786632 27.838154986648362 22.30755339341896 94-95 22.10369113455146 27.515767292383963 28.02272362286431 22.357817950200268 96-97 22.166469057773252 27.64074209479978 28.050606238793822 22.14218260863314 98-99 23.3526867606361 29.481850360760635 28.132368273656873 19.03309460494639 100 22.57583338970819 30.34881870180566 21.8227112908357 25.252636617650452 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2372.0 1 2620.0 2 5553.0 3 8647.0 4 12873.0 5 23379.5 6 31166.5 7 34536.0 8 34821.0 9 31174.5 10 26219.5 11 21890.5 12 24122.5 13 34739.5 14 59101.0 15 92295.5 16 118529.0 17 131986.5 18 131685.0 19 119980.0 20 102426.0 21 83593.0 22 69888.5 23 65618.5 24 69206.5 25 79988.0 26 97377.5 27 114383.5 28 127016.0 29 141389.0 30 155137.0 31 166339.0 32 182067.5 33 201090.0 34 221802.5 35 242124.0 36 263494.5 37 286686.5 38 300467.0 39 305707.0 40 317552.0 41 328926.0 42 338320.0 43 353324.5 44 367725.5 45 382361.0 46 391647.5 47 394203.5 48 390035.0 49 378761.0 50 361343.5 51 341330.5 52 319731.5 53 298059.0 54 273836.0 55 238812.5 56 202986.5 57 168401.5 58 137153.5 59 114812.0 60 92638.5 61 70625.5 62 52058.0 63 37866.0 64 28138.0 65 20149.5 66 14931.0 67 11912.0 68 9649.5 69 7301.0 70 5302.5 71 3738.5 72 2604.0 73 1926.5 74 1540.0 75 1112.0 76 758.0 77 492.5 78 332.5 79 248.0 80 175.0 81 126.0 82 110.5 83 85.0 84 52.0 85 32.5 86 25.0 87 18.0 88 13.5 89 12.0 90 7.0 91 3.0 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 5.440785843955021E-4 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0016495999633267882 12-13 0.009081481903367475 14-15 0.0 16-17 0.0 18-19 1.157614009352132E-5 20-21 5.788291836876211E-6 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.005717773958117306 36-37 0.046398963811459255 38-39 0.15010417934939588 40-41 0.17830072139208775 42-43 0.05508463035313842 44-45 0.004971873925062442 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.014907473280932051 64-65 0.10239176212859641 66-67 0.22177557922977179 68-69 0.24557662395184648 70-71 0.11293714519437931 72-73 0.0074529232733499765 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 165.0 20-21 851.0 22-23 1889.0 24-25 3336.0 26-27 6669.0 28-29 14534.0 30-31 29667.0 32-33 36057.0 34-35 45123.0 36-37 56366.0 38-39 71076.0 40-41 87285.0 42-43 107058.0 44-45 133022.0 46-47 127285.0 48-49 102852.0 50-51 87976.0 52-53 80399.0 54-55 80501.0 56-57 79607.0 58-59 78435.0 60-61 71365.0 62-63 62499.0 64-65 76862.0 66-67 92934.0 68-69 88954.0 70-71 91172.0 72-73 85594.0 74-75 82569.0 76-77 78434.0 78-79 83580.0 80-81 89098.0 82-83 86434.0 84-85 95090.0 86-87 96933.0 88-89 102795.0 90-91 99759.0 92-93 98718.0 94-95 112858.0 96-97 256229.0 98-99 486201.0 100-101 5070227.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 76.51651861933708 #Duplication Level Percentage of deduplicated Percentage of total 1 86.57579246728798 66.24478236307104 2 7.8835746660622945 12.064473754453793 3 2.4557703366039996 5.63720990056727 4 1.124742981448017 3.442456691277436 5 0.6474963258489319 2.4772082336386076 6 0.39086704607175365 1.7944671365060776 7 0.24120647930106603 1.2919396045181335 8 0.15721501827487874 0.9623636698455343 9 0.11553565164679118 0.7956347256386047 >10 0.40065057322458025 4.74076031666894 >50 0.005583220857541365 0.2890228103601375 >100 0.0014260447793314369 0.18377130469376676 >500 1.3918859276124842E-4 0.0759094887606488 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.1576140093521321E-5 2 0.0 0.0 0.0 0.0 1.1576140093521321E-5 3 0.0 0.0 0.0 0.0 1.1576140093521321E-5 4 0.0 0.0 0.0 0.0 2.3152280187042643E-5 5 0.0 0.0 0.0 0.0 3.472842028056396E-5 6 0.0 0.0 0.0 0.0 6.945684056112792E-5 7 0.0 0.0 0.0 0.0 6.945684056112792E-5 8 0.0 0.0 0.0 0.0 8.103298065464925E-5 9 0.0 0.0 0.0 1.1576140093521321E-5 1.0418526084169188E-4 10-11 1.1576140093521321E-5 0.0 0.0 1.1576140093521321E-5 1.157614009352132E-4 12-13 2.3152280187042643E-5 0.0 0.0 1.1576140093521321E-5 1.2154947098197386E-4 14-15 2.89403502338033E-5 0.0 0.0 1.1576140093521321E-5 1.9100631154310178E-4 16-17 4.0516490327324624E-5 0.0 0.0 1.1576140093521321E-5 2.315228018704264E-4 18-19 4.6304560374085285E-5 0.0 0.0 1.736421014028198E-5 2.89403502338033E-4 20-21 4.6304560374085285E-5 0.0 0.0 2.3152280187042643E-5 2.89403502338033E-4 22-23 4.6304560374085285E-5 0.0 0.0 2.89403502338033E-5 3.5307227285240024E-4 24-25 5.209263042084594E-5 0.0 0.0 9.839719079493122E-5 4.2831718346028884E-4 26-27 5.78807004676066E-5 0.0 0.0 2.778273622445117E-4 4.4568139360057083E-4 28-29 6.945684056112792E-5 0.0 0.0 9.434554176219877E-4 4.5725753369409215E-4 30-31 6.945684056112792E-5 0.0 0.0 0.0028361543229127235 4.630456037408528E-4 32-33 6.945684056112792E-5 0.0 0.0 0.005215051112131355 4.8619788392789546E-4 34-35 7.524491060788859E-5 0.0 0.0 0.008132238415698727 5.093501641149381E-4 36-37 8.103298065464925E-5 0.0 0.0 0.011755570264970901 5.209263042084594E-4 38-39 8.103298065464925E-5 0.0 0.0 0.016791191205652676 5.498666544422627E-4 40-41 1.0418526084169188E-4 0.0 0.0 0.022145155998906284 5.730189346293054E-4 42-43 1.0418526084169188E-4 0.0 0.0 0.027672762893562717 5.903831447695874E-4 44-45 1.0418526084169188E-4 0.0 0.0 0.03399912345467212 6.077473549098694E-4 46-47 1.0418526084169188E-4 0.0 0.0 0.04082325803980294 6.424757751904333E-4 48-49 1.0418526084169188E-4 0.0 0.0 0.04723065158156699 7.061445457048006E-4 50-51 1.0418526084169188E-4 0.0 0.0 0.05320972793987075 7.061445457048006E-4 52-53 1.0418526084169188E-4 0.0 0.0 0.05913092359770691 7.582371761256465E-4 54-55 1.0418526084169188E-4 0.0 0.0 0.06436333891997854 8.161178765932531E-4 56-57 1.0418526084169188E-4 0.0 0.0 0.06895327846705974 8.219059466400137E-4 58-59 1.0418526084169188E-4 0.0 0.0 0.07369370783535673 8.276940166867744E-4 60-61 1.0418526084169188E-4 0.0 0.0 0.07865408386543062 8.450582268270564E-4 62-63 1.0418526084169188E-4 0.0 0.0 0.08280413008895801 8.50846296873817E-4 64-65 1.0418526084169188E-4 0.0 0.0 0.08691944789220483 8.624224369673383E-4 66-67 1.0418526084169188E-4 0.0 0.0 0.09216922742461675 9.02938927294663E-4 68-69 1.0418526084169188E-4 0.0 0.0 0.0981656679930608 9.37667347575227E-4 70-71 1.0418526084169188E-4 0.0 0.0 0.10287715701112399 9.492434876687483E-4 72-73 1.0418526084169188E-4 0.0 0.0 0.10725293796647503 0.0010302764683233975 74-75 1.0418526084169188E-4 0.0 0.0 0.11051740947284805 0.0010302764683233975 76-77 1.0418526084169188E-4 0.0 0.0 0.11377030483912753 0.001036064538370158 78-79 1.3891368112225585E-4 0.0 0.0 0.11587716233614842 0.0010418526084169189 80-81 1.3891368112225585E-4 0.0 0.0 0.11658909495189998 0.0010534287485104402 82-83 1.3891368112225585E-4 0.0 0.0 0.1172026303768566 0.001093945238837765 84-85 1.3891368112225585E-4 0.0 0.0 0.11759043106998956 0.0010997333088845255 86-87 1.3891368112225585E-4 0.0 0.0 0.11780458966171972 0.0011113094489780468 88 1.3891368112225585E-4 0.0 0.0 0.11782195387186 0.0011228855890715681 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 25320 0.0 42.668488 1 GTATCAA 43540 0.0 34.310287 1 ATCAACG 55020 0.0 26.852715 3 TATCAAC 55300 0.0 26.828285 2 AACGCAG 55440 0.0 26.728765 6 CAACGCA 56125 0.0 26.332417 5 TCAACGC 56610 0.0 26.134773 4 ACGCAGA 61760 0.0 23.921524 7 CGCAGAG 61940 0.0 23.832115 8 GCAGAGT 67475 0.0 21.761501 9 TACATGG 39195 0.0 20.324562 2 GTACATG 40275 0.0 20.207762 1 GAGTACT 45665 0.0 20.091051 12-13 ACATGGG 39515 0.0 19.65066 3 ACGGTAC 1145 0.0 19.007195 3 CAGAGTA 66935 0.0 18.970192 10-11 AGAGTAC 65060 0.0 18.715141 10-11 AGTACTT 48255 0.0 18.433977 12-13 GTACTAG 2445 0.0 18.306181 1 CATGGGG 25345 0.0 18.291496 4 >>END_MODULE