##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139133_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8249358 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.73352035394754 33.0 33.0 33.0 33.0 33.0 2 32.663762198221974 33.0 33.0 33.0 33.0 33.0 3 32.73825235854717 33.0 33.0 33.0 33.0 33.0 4 36.72586351568207 37.0 37.0 37.0 37.0 37.0 5 36.73078086803846 37.0 37.0 37.0 37.0 37.0 6 36.72719986209836 37.0 37.0 37.0 37.0 37.0 7 36.71524002231446 37.0 37.0 37.0 37.0 37.0 8 36.71089313859333 37.0 37.0 37.0 37.0 37.0 9 36.70149410414726 37.0 37.0 37.0 37.0 37.0 10-11 36.7112849872681 37.0 37.0 37.0 37.0 37.0 12-13 36.70962910083427 37.0 37.0 37.0 37.0 37.0 14-15 38.94595700659373 40.0 40.0 40.0 37.0 40.0 16-17 38.885154032592595 40.0 37.0 40.0 37.0 40.0 18-19 38.94472363788794 40.0 38.5 40.0 37.0 40.0 20-21 38.96306216040166 40.0 40.0 40.0 37.0 40.0 22-23 38.967281676617674 40.0 40.0 40.0 37.0 40.0 24-25 38.95885053589008 40.0 40.0 40.0 37.0 40.0 26-27 38.88037206721465 40.0 38.5 40.0 37.0 40.0 28-29 38.78146180482521 40.0 37.0 40.0 37.0 40.0 30-31 38.609988167821356 40.0 37.0 40.0 37.0 40.0 32-33 38.503568156257586 40.0 37.0 40.0 37.0 40.0 34-35 38.474115556567426 40.0 37.0 40.0 37.0 40.0 36-37 38.441874510212436 40.0 37.0 40.0 37.0 40.0 38-39 38.39895727539701 40.0 37.0 40.0 37.0 40.0 40-41 38.36779119037358 40.0 37.0 40.0 37.0 40.0 42-43 38.33115260099244 40.0 37.0 40.0 37.0 40.0 44-45 38.23172748709875 40.0 37.0 40.0 37.0 40.0 46-47 37.839971896706416 40.0 37.0 40.0 33.0 40.0 48-49 38.01612591957405 40.0 37.0 40.0 35.0 40.0 50-51 38.02492370118826 40.0 37.0 40.0 37.0 40.0 52-53 37.98609189336821 40.0 37.0 40.0 35.0 40.0 54-55 37.89046868470999 40.0 37.0 40.0 33.0 40.0 56-57 37.715521460860714 40.0 37.0 40.0 33.0 40.0 58-59 37.539057034753945 40.0 37.0 40.0 33.0 40.0 60-61 37.36033385018416 37.0 37.0 40.0 33.0 40.0 62-63 37.213800279772414 37.0 37.0 40.0 33.0 40.0 64-65 37.03089691265014 37.0 37.0 40.0 33.0 40.0 66-67 36.82782183960746 37.0 37.0 40.0 33.0 40.0 68-69 36.62433328626574 37.0 37.0 40.0 33.0 40.0 70-71 36.4040838906638 37.0 37.0 38.5 33.0 40.0 72-73 36.12636001570037 37.0 37.0 37.0 33.0 40.0 74-75 35.79783174253354 37.0 37.0 37.0 33.0 40.0 76-77 33.64153656300827 35.0 33.0 37.0 30.0 37.0 78-79 35.29241009867336 37.0 33.0 37.0 33.0 37.0 80-81 35.50301396262167 37.0 33.0 37.0 33.0 37.0 82-83 35.34192864419343 37.0 33.0 37.0 33.0 37.0 84-85 35.199292747210635 37.0 33.0 37.0 33.0 37.0 86-87 35.109278508117 37.0 33.0 37.0 33.0 37.0 88-89 34.94010375389233 37.0 33.0 37.0 33.0 37.0 90-91 34.88768077773791 37.0 33.0 37.0 33.0 37.0 92-93 34.94055903806445 37.0 33.0 37.0 33.0 37.0 94-95 34.9313478070315 37.0 33.0 37.0 33.0 37.0 96-97 34.93138293318843 37.0 33.0 37.0 33.0 37.0 98-99 34.936499731945695 37.0 33.0 37.0 33.0 37.0 100 34.87942103629627 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 1.0 16 0.0 17 2.0 18 4.0 19 17.0 20 36.0 21 148.0 22 580.0 23 1541.0 24 3794.0 25 8002.0 26 14856.0 27 24873.0 28 37536.0 29 54700.0 30 76875.0 31 105714.0 32 144620.0 33 201232.0 34 292029.0 35 462335.0 36 932570.0 37 2680347.0 38 3086779.0 39 120766.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.8510402147853 20.10271349732355 14.560897738174408 22.48534854971674 2 14.946757436157473 20.94675428438292 42.281261694144284 21.825226585315324 3 17.84977128514896 27.211242575934726 31.217931583742004 23.721054555174316 4 12.15250161982361 18.119598441332684 39.07569743331448 30.652202505529218 5 12.626647780341616 38.07696480512719 35.47096712409637 13.825420290434828 6 28.701565152669513 38.16700820852055 18.924776543135795 14.206650095674147 7 25.14043825244519 33.981468854231636 23.490600174195436 17.387492719127735 8 24.223124299263567 36.082872883304724 21.38632138238168 18.30768143505003 9 25.93579111681068 16.2879967493224 21.869922710339726 35.90628942352719 10-11 24.11434867430888 26.768173569749067 28.74411058347235 20.373367172469706 12-13 25.173942173422027 24.810664392030862 29.284483217943695 20.730910216603416 14-15 22.173198205242155 25.848563003327047 28.113018006977025 23.865220784453772 16-17 20.418970785362934 28.89589711102367 28.636089014442096 22.049043089171303 18-19 20.32428462917963 27.287414366063395 31.81197251955849 20.576328485198484 20-21 21.53080454848629 26.340889898672266 31.93324487087884 20.195060681962605 22-23 21.272752082627747 26.328792671492664 31.675509735579645 20.722945510299947 24-25 20.695491206391207 26.56467786275834 31.937783232055956 20.802047698794492 26-27 20.69578368413138 26.87035828224119 31.83505706955077 20.59880096407666 28-29 20.52451897266689 27.12936356888031 31.677373163501144 20.66874429495165 30-31 20.84433833300096 26.977611672431834 31.528032771466425 20.650017223100782 32-33 20.505895559458963 27.189189311225824 31.470362700819678 20.83455242849553 34-35 20.612381947413976 27.356208631694546 31.296168535082575 20.735240885808906 36-37 20.851387742036028 27.3703308049009 31.07166942188218 20.70661203118089 38-39 20.77961026181695 27.430067695440318 30.936139308074072 20.85418273466866 40-41 20.990048248830668 27.455716676764098 30.748041317555085 20.806193756850153 42-43 21.13558520498884 27.68408010391314 30.139790912644866 21.04054377845316 44-45 21.189558212862583 28.052853474710382 29.554325996517754 21.203262315909278 46-47 21.37156060262107 28.05193700783535 28.976232899094683 21.600269490448902 48-49 21.633989513205933 28.181982128759476 28.510440955598497 21.67358740243609 50-51 21.44175715954163 28.253616365393107 28.404577068660597 21.900049406404662 52-53 21.668395646516377 28.309364100009628 28.05351254515534 21.96872770831866 54-55 21.712053896628444 28.34430885967195 28.064347407006174 21.879289836693427 56-57 21.794759847056948 28.311478629232933 27.8849978292873 22.00876369442282 58-59 21.648804353098363 28.376171559786755 28.089709896331705 21.885314190783177 60-61 21.842773556525643 28.183944646276704 28.06691266406679 21.906369133130863 62-63 21.827310993780365 28.242443622588816 27.935836374761326 21.9944090088695 64-65 21.756732923546043 28.301640116804 27.942664812460055 21.998962147189904 66-67 21.94436607490478 28.236008875389185 27.667613335671405 22.152011714034632 68-69 21.93388855651672 28.16301749182908 27.710903236244448 22.192190715409758 70-71 21.856487267147887 27.79362807312287 27.7785192497765 22.57136540995274 72-73 22.048716800241117 27.89775425092063 27.890578187398113 22.16295076144014 74-75 21.960425642795784 28.023323790215983 27.785042791643473 22.231207775344764 76-77 21.971277420993005 27.816683140947244 27.59026489136889 22.62177454669087 78-79 22.03746080995322 27.785157687211115 27.67788943717135 22.499492065664317 80-81 22.052268267581205 27.692479225816964 27.752964252629564 22.50228825397227 82-83 22.297719094764055 27.496292677344602 27.814850781416705 22.391137446474637 84-85 22.57626125965735 27.412474092328072 27.69037886616775 22.32088578184683 86-87 22.129719301173036 27.548215711502017 27.79469101687033 22.52737397045461 88-89 22.368087750554423 27.31177466092746 27.69924637237149 22.620891216146628 90-91 22.545591207386366 27.131931411245674 27.754691113439883 22.567786267928078 92-93 22.478472248128327 27.219709257349262 27.77029638740793 22.53152210711448 94-95 22.354975589252344 27.139132155156005 27.905639630869356 22.600252624722298 96-97 22.455854374491405 27.394497656975087 27.833544802182164 22.316103166351343 98-99 23.64523303536648 29.171924228324396 27.919328894545526 19.263513841763597 100 22.73663584317653 29.759428166267764 21.621763778784704 25.88217221177101 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2437.0 1 2647.5 2 5454.0 3 8518.5 4 12265.5 5 21919.5 6 29257.5 7 32777.5 8 33857.5 9 30915.5 10 26526.5 11 22793.5 12 25342.5 13 35322.5 14 58369.5 15 90979.5 16 116954.5 17 130510.0 18 131213.0 19 119970.5 20 101991.5 21 82128.5 22 66012.0 23 58568.0 24 58864.0 25 66052.0 26 77740.5 27 90098.5 28 103388.5 29 119616.5 30 135345.5 31 149923.5 32 167715.5 33 185391.0 34 203384.5 35 219779.5 36 237027.5 37 256517.0 38 269963.5 39 279775.5 40 293947.5 41 307462.5 42 319357.0 43 335432.0 44 351628.0 45 367220.5 46 377457.5 47 379633.0 48 375287.0 49 362165.5 50 346744.0 51 331343.0 52 311439.0 53 289494.0 54 262446.0 55 228998.5 56 196598.0 57 163054.0 58 133640.0 59 111625.5 60 89053.0 61 69078.0 62 52359.0 63 38238.0 64 28126.0 65 21030.0 66 15832.0 67 12031.5 68 8944.5 69 6440.0 70 4489.5 71 3158.0 72 2234.5 73 1494.5 74 1021.0 75 647.0 76 422.5 77 278.0 78 167.5 79 98.5 80 69.5 81 48.0 82 33.5 83 22.0 84 13.5 85 9.5 86 8.0 87 7.5 88 5.5 89 3.5 90 2.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 4.848862178123436E-5 2 4.4851975147641796E-4 3 3.636646633592578E-5 4 3.636646633592578E-5 5 3.636646633592578E-5 6 3.636646633592578E-5 7 3.636646633592578E-5 8 1.212215544530859E-5 9 1.212215544530859E-5 10-11 0.0016061855965033886 12-13 0.008624913599337064 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 3.0358103582699448E-5 30-31 4.2586243073879894E-5 32-33 3.661097791155972E-5 34-35 0.0056081170269534925 36-37 0.04575404605058638 38-39 0.14901554112943444 40-41 0.17581701549211912 42-43 0.05274213407064346 44-45 0.004499842505512307 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.014533011035865516 64-65 0.10002643898609487 66-67 0.21868233436009085 68-69 0.24208140954400767 70-71 0.1104105430799253 72-73 0.00705596456231493 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 135.0 20-21 726.0 22-23 1595.0 24-25 3046.0 26-27 6121.0 28-29 13128.0 30-31 24087.0 32-33 26237.0 34-35 33371.0 36-37 48351.0 38-39 62604.0 40-41 77026.0 42-43 83580.0 44-45 104500.0 46-47 106689.0 48-49 87483.0 50-51 79964.0 52-53 65188.0 54-55 70640.0 56-57 77970.0 58-59 71869.0 60-61 34183.0 62-63 64590.0 64-65 85310.0 66-67 106187.0 68-69 100188.0 70-71 101845.0 72-73 95108.0 74-75 89798.0 76-77 88249.0 78-79 93280.0 80-81 92929.0 82-83 93077.0 84-85 99682.0 86-87 106038.0 88-89 110624.0 90-91 107507.0 92-93 106921.0 94-95 115884.0 96-97 255737.0 98-99 466868.0 100-101 4791043.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 76.30002387558412 #Duplication Level Percentage of deduplicated Percentage of total 1 86.45919391212034 65.9683855975854 2 7.891531031005409 12.042480121612515 3 2.578483065553074 5.9021495839346665 4 1.1709273380068357 3.5736713538598286 5 0.619648200440946 2.363958624405346 6 0.36598874598080344 1.6754970033918233 7 0.24492603504151955 1.3081503624994064 8 0.15777276551846134 0.9630452620780429 9 0.11744328494195648 0.8064832900588478 >10 0.38729803556712045 4.44480241707848 >50 0.005151337604785909 0.26231920748527743 >100 0.0011096925880889213 0.16076874984504066 >500 1.880555836128947E-4 0.10069879407840099 >1k 3.385000470222806E-4 0.42758963208702866 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 0.0 14-15 0.0 0.0 0.0 0.0 0.0 16-17 0.0 0.0 0.0 0.0 0.0 18-19 0.0 0.0 0.0 3.030538861327148E-5 0.0 20-21 0.0 0.0 0.0 3.636646633592578E-5 0.0 22-23 0.0 0.0 0.0 6.667185494919727E-5 0.0 24-25 0.0 0.0 0.0 1.454658653437031E-4 0.0 26-27 0.0 0.0 0.0 3.8790897424987496E-4 0.0 28-29 0.0 0.0 0.0 9.697724356246874E-4 0.0 30-31 0.0 0.0 0.0 0.0022547209128273983 0.0 32-33 0.0 0.0 0.0 0.004788251400896894 0.0 34-35 0.0 0.0 0.0 0.0072126824899586125 0.0 36-37 0.0 0.0 0.0 0.01045535907157866 0.0 38-39 0.0 0.0 0.0 0.016061855965033886 0.0 40-41 0.0 0.0 0.0 0.02269873607134034 0.0 42-43 0.0 0.0 0.0 0.028953768281119573 6.061077722654296E-6 44-45 0.0 0.0 0.0 0.03476634181714504 2.4244310890617185E-5 46-47 0.0 0.0 0.0 0.04106986264870551 3.636646633592578E-5 48-49 0.0 0.0 0.0 0.048391644537671905 3.636646633592578E-5 50-51 0.0 0.0 0.0 0.05655591623008724 3.636646633592578E-5 52-53 0.0 0.0 0.0 0.06502324180863528 4.2427544058580074E-5 54-55 0.0 0.0 0.0 0.07207227520008223 6.061077722654296E-5 56-57 0.0 0.0 0.0 0.0771575194093892 7.273293267185156E-5 58-59 0.0 0.0 0.0 0.08215184745285634 7.273293267185156E-5 60-61 0.0 0.0 0.0 0.08597032641812855 7.273293267185156E-5 62-63 0.0 0.0 0.0 0.08869781139332297 7.273293267185156E-5 64-65 0.0 0.0 0.0 0.0928193442447279 7.273293267185156E-5 66-67 0.0 0.0 0.0 0.0993956135738078 8.485508811716015E-5 68-69 0.0 0.0 0.0 0.10729319784642635 8.485508811716015E-5 70-71 0.0 0.0 0.0 0.11383310070917034 8.485508811716015E-5 72-73 0.0 0.0 0.0 0.11937292574767637 8.485508811716015E-5 74-75 0.0 0.0 0.0 0.12369447416392887 8.485508811716015E-5 76-77 0.0 0.0 0.0 0.12743415911880657 8.485508811716015E-5 78-79 0.0 0.0 0.0 0.12980404050836442 8.485508811716015E-5 80-81 0.0 0.0 0.0 0.13059198061230948 8.485508811716015E-5 82-83 0.0 0.0 0.0 0.13122233269546552 8.485508811716015E-5 84-85 0.0 0.0 0.0 0.131634485980606 9.091616583981445E-5 86-87 1.2122155445308593E-5 0.0 0.0 0.13175570753505908 9.697724356246874E-5 88 1.2122155445308593E-5 0.0 0.0 0.13175570753505908 9.697724356246874E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 22675 0.0 48.88542 1 GTATCAA 41030 0.0 36.283287 1 TATCAAC 52315 0.0 28.298698 2 ATCAACG 52480 0.0 28.217419 3 AACGCAG 52940 0.0 28.02344 6 TCAACGC 53160 0.0 27.856474 4 CAACGCA 53175 0.0 27.841866 5 ACGCAGA 58865 0.0 25.133385 7 CGCAGAG 59105 0.0 25.010372 8 GCAGAGT 64670 0.0 22.807095 9 TACATGG 35245 0.0 21.58789 2 GTACATG 36140 0.0 21.46451 1 GAGTACT 45625 0.0 21.202578 12-13 ACATGGG 36135 0.0 20.667608 3 CAGAGTA 63750 0.0 20.062843 10-11 AGAGTAC 62230 0.0 19.166107 10-11 GTACTTT 50665 0.0 19.104763 14-15 AGTACTT 47585 0.0 19.084164 12-13 CATGGGG 22735 0.0 18.75794 4 GTACTGG 5815 0.0 18.529903 1 >>END_MODULE