##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139132_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10454685 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.668381591602234 33.0 33.0 33.0 33.0 33.0 2 32.68479145952269 33.0 33.0 33.0 33.0 33.0 3 32.64930516797015 33.0 33.0 33.0 33.0 33.0 4 36.59713391651685 37.0 37.0 37.0 37.0 37.0 5 36.625097073704275 37.0 37.0 37.0 37.0 37.0 6 36.59973284704417 37.0 37.0 37.0 37.0 37.0 7 36.505153144260206 37.0 37.0 37.0 37.0 37.0 8 36.54225115343026 37.0 37.0 37.0 37.0 37.0 9 36.59554008561712 37.0 37.0 37.0 37.0 37.0 10-11 36.57863125479152 37.0 37.0 37.0 37.0 37.0 12-13 36.565037779713116 37.0 37.0 37.0 37.0 37.0 14-15 38.63792634593965 40.0 37.0 40.0 37.0 40.0 16-17 38.56834844856636 40.0 37.0 40.0 37.0 40.0 18-19 38.619739666953144 40.0 37.0 40.0 37.0 40.0 20-21 38.64141593721406 40.0 37.0 40.0 37.0 40.0 22-23 38.62072985240438 40.0 37.0 40.0 37.0 40.0 24-25 38.64352315426766 40.0 37.0 40.0 37.0 40.0 26-27 38.5577809723093 40.0 37.0 40.0 37.0 40.0 28-29 38.43397792767364 40.0 37.0 40.0 37.0 40.0 30-31 38.26999028311572 40.0 37.0 40.0 37.0 40.0 32-33 38.162841168964135 40.0 37.0 40.0 37.0 40.0 34-35 38.12991326258867 40.0 37.0 40.0 37.0 40.0 36-37 38.1033344221468 40.0 37.0 40.0 37.0 40.0 38-39 38.04435828087096 40.0 37.0 40.0 37.0 40.0 40-41 38.04049884207174 40.0 37.0 40.0 37.0 40.0 42-43 38.01276080441129 40.0 37.0 40.0 33.0 40.0 44-45 37.91734918693328 40.0 37.0 40.0 33.0 40.0 46-47 37.83494319538066 40.0 37.0 40.0 33.0 40.0 48-49 37.768523267365396 40.0 37.0 40.0 33.0 40.0 50-51 37.69974463692819 40.0 37.0 40.0 33.0 40.0 52-53 37.64062671461261 40.0 37.0 40.0 33.0 40.0 54-55 37.54522527842977 40.0 37.0 40.0 33.0 40.0 56-57 37.375505474089955 40.0 37.0 40.0 33.0 40.0 58-59 37.17343392137635 37.0 37.0 40.0 33.0 40.0 60-61 36.99189240101539 37.0 37.0 40.0 33.0 40.0 62-63 36.85480261540913 37.0 37.0 40.0 33.0 40.0 64-65 36.703108642748155 37.0 37.0 40.0 33.0 40.0 66-67 36.510710274142895 37.0 37.0 40.0 33.0 40.0 68-69 36.321729439424246 37.0 37.0 40.0 33.0 40.0 70-71 36.11734975105608 37.0 37.0 38.5 33.0 40.0 72-73 35.838311820328585 37.0 37.0 37.0 33.0 40.0 74-75 35.51095553611121 37.0 33.0 37.0 33.0 40.0 76-77 33.3279650887131 35.0 33.0 37.0 27.0 37.0 78-79 35.03331653450339 37.0 33.0 37.0 33.0 37.0 80-81 35.26789136279061 37.0 33.0 37.0 33.0 37.0 82-83 35.14864070337764 37.0 33.0 37.0 33.0 37.0 84-85 34.99389919529634 37.0 33.0 37.0 33.0 37.0 86-87 34.887523128049686 37.0 33.0 37.0 33.0 37.0 88-89 34.79769053937531 37.0 33.0 37.0 33.0 37.0 90-91 34.718446660872395 37.0 33.0 37.0 33.0 37.0 92-93 34.70511416363304 37.0 33.0 37.0 33.0 37.0 94-95 34.66910531698727 37.0 33.0 37.0 33.0 37.0 96-97 34.67575055516265 37.0 33.0 37.0 33.0 37.0 98-99 34.6887891610235 37.0 33.0 37.0 33.0 37.0 100 34.64429236878795 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 3.0 18 16.0 19 15.0 20 60.0 21 283.0 22 1000.0 23 2935.0 24 7021.0 25 14402.0 26 25946.0 27 42926.0 28 65347.0 29 93639.0 30 130207.0 31 177488.0 32 243139.0 33 334174.0 34 472433.0 35 712608.0 36 1313305.0 37 3255554.0 38 3453128.0 39 109055.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.38312153833425 20.487293495691166 14.944869214137011 23.184715751837572 2 14.278485787953535 20.532591615675013 43.077129683513135 22.111792912858313 3 17.711772281996062 27.336385553462396 31.18995933402106 23.761882830520477 4 11.8659529196719 18.4475285482059 38.52214581309719 31.164372719025014 5 12.621633267764643 38.09745582961131 35.50847299559958 13.77243790702446 6 28.598709573746124 38.09367761917265 18.856149180965282 14.451463626115945 7 25.38400726564215 33.71699864701806 22.782073300152035 18.116920787187755 8 24.252954536650314 36.34603051167969 21.343215984030124 18.057798967639865 9 25.419742440829157 16.662587155901875 21.32308147017342 36.594588933095544 10-11 23.919577682158764 26.73360316451428 28.674312042878388 20.672507110448567 12-13 25.07946015972288 24.428091078413093 28.957886952348584 21.534561809515438 14-15 22.26505628816172 25.693767913619585 27.128612674604735 24.91256312361396 16-17 20.92422679401627 29.101106346102252 27.691733419036535 22.282933440844943 18-19 20.873417037433455 27.16850866381914 30.586579126965567 21.371495171781838 20-21 21.8327590627625 26.24057724128494 30.7563799369569 21.170283758995662 22-23 21.468299481748403 26.673440459518392 30.519119287027845 21.339140771705356 24-25 21.193244256948116 27.010508919814747 30.7365056682602 21.05974115497694 26-27 21.214973056445793 27.08678824112963 30.680284836850337 21.01795386557425 28-29 20.596402408511707 26.883473726376366 30.89049821685937 21.629625648252553 30-31 21.302178422410098 26.751675471432257 30.973994018857574 20.97215208730007 32-33 20.67468774816521 27.392946939552143 30.73011209376014 21.202253218522504 34-35 20.670915206830255 27.545313348973398 31.032686679936567 20.75108476425978 36-37 21.273003713819488 27.203506472752697 30.346679889341154 21.176809924086662 38-39 21.04229204697973 26.975796307311704 30.535749750788003 21.44616189492056 40-41 21.14484473531174 27.09767225050123 30.508286208162723 21.249196806024308 42-43 21.522711040237066 27.00959819736537 30.15590845461002 21.311782307787542 44-45 21.301294857235924 27.544724047250273 29.562284290056773 21.591696805457026 46-47 21.896421738503285 27.28410897236931 28.643559646447724 22.175909642679684 48-49 21.796015826609906 27.48635551703091 28.47238083522844 22.245247821130747 50-51 21.444267812001442 27.707420105928136 28.630834666865507 22.217477415204915 52-53 21.69229146815812 27.85574551421725 28.69950248809215 21.75246052953248 54-55 21.65611804018996 27.912401520482543 28.272049240000786 22.159431199326708 56-57 22.070155433150333 28.297648017213945 27.577644734304187 22.054551815331536 58-59 21.59573836737301 28.533680956913365 28.18564593586182 21.684934739851812 60-61 21.93706694752896 28.929847229781284 27.47605891500418 21.65702690768557 62-63 21.622322805198117 29.06968307094935 27.478703034163527 21.829291089689008 64-65 21.698223030215992 28.875989466457845 27.564994187128818 21.860793316197345 66-67 21.88877819408789 28.591403296297145 27.41933796189776 22.1004805477172 68-69 22.00433480231556 28.24048376167136 27.624251561169988 22.13092987484309 70-71 22.002156777195523 27.850610435584628 27.730211885912126 22.417020901307723 72-73 22.0757534048299 27.882682453888886 27.785321739088392 22.25624240219282 74-75 22.043767486686715 27.94904539756489 27.70492802582006 22.302259089928334 76-77 22.054719471363338 27.89248329592795 27.485142640363907 22.56765459234481 78-79 22.132007616883048 27.86267333070927 27.553204603921454 22.45211444848623 80-81 22.06768413714498 27.84056584920023 27.570251806898664 22.52149820675612 82-83 22.291738514663606 27.64657842154154 27.674387649594994 22.387295414199862 84-85 22.495724755753326 27.565087974100443 27.530477304434097 22.408709965712138 86-87 22.1943469050463 27.69195477318015 27.63926732018302 22.474431001590528 88-89 22.460876251018245 27.449239316404938 27.56382847404455 22.526055958532268 90-91 22.53213281034402 27.445369995669633 27.56531412627443 22.45718306771192 92-93 22.579903301763206 27.419556066429507 27.532132243530512 22.46840838827677 94-95 22.364619226310943 27.328714346823187 27.724343342548032 22.58232308431784 96-97 22.52210089228154 27.469487477266252 27.707240373980945 22.30117125647126 98-99 23.73636325657395 29.247748860641607 27.80415474839452 19.21173313438992 100 22.757119393291028 30.004114383134773 21.6031219400712 25.635644283503 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2383.0 1 2522.0 2 5037.0 3 7805.5 4 11152.5 5 20307.0 6 27638.5 7 31085.0 8 31823.0 9 29028.0 10 25197.5 11 21587.5 12 23470.0 13 33367.5 14 57114.5 15 91050.5 16 119587.0 17 136262.5 18 138739.0 19 128138.5 20 110783.5 21 91227.5 22 75576.0 23 69085.5 24 71592.5 25 82415.5 26 99422.0 27 116815.0 28 132308.0 29 149654.5 30 167821.5 31 185783.5 32 208408.5 33 232327.0 34 255484.5 35 278188.0 36 305893.0 37 335517.0 38 354155.5 39 367452.5 40 384227.5 41 399279.5 42 411010.5 43 428698.5 44 454206.5 45 484124.0 46 508555.0 47 521511.5 48 517481.5 49 502553.0 50 485489.5 51 458308.0 52 419715.5 53 378763.5 54 339339.5 55 297853.5 56 258293.5 57 218382.0 58 181918.0 59 152378.0 60 122277.5 61 94968.5 62 72506.0 63 54329.0 64 40690.0 65 30235.0 66 22704.5 67 17747.0 68 13845.0 69 10299.0 70 7486.0 71 5360.0 72 3877.0 73 2733.0 74 1911.5 75 1269.5 76 802.0 77 546.0 78 365.0 79 228.0 80 154.5 81 120.0 82 97.5 83 67.5 84 41.5 85 29.0 86 22.0 87 15.0 88 6.5 89 2.5 90 2.5 91 2.0 92 2.0 93 1.5 94 1.0 95 1.0 96 1.0 97 1.5 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 3.1564796069895936E-4 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0067338231615778 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.4353112400658521E-5 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0019240710326416718 36-37 0.036659830077482476 38-39 0.11767512865435191 40-41 0.15401726639082744 42-43 0.05504696182999189 44-45 0.0017066089977996897 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 5.580932365071333E-6 62-63 0.009351548907498942 64-65 0.07489877650645671 66-67 0.17815657213339214 68-69 0.19791598416389308 70-71 0.0785647540685575 72-73 0.005215264735419286 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 216.0 20-21 982.0 22-23 2044.0 24-25 3778.0 26-27 7201.0 28-29 14626.0 30-31 31548.0 32-33 39670.0 34-35 52940.0 36-37 73345.0 38-39 92927.0 40-41 101518.0 42-43 124265.0 44-45 147060.0 46-47 138882.0 48-49 117109.0 50-51 96449.0 52-53 89788.0 54-55 104363.0 56-57 113526.0 58-59 113471.0 60-61 114628.0 62-63 109467.0 64-65 109797.0 66-67 139129.0 68-69 114417.0 70-71 104036.0 72-73 95972.0 74-75 95552.0 76-77 91389.0 78-79 98039.0 80-81 103435.0 82-83 103619.0 84-85 109420.0 86-87 113811.0 88-89 121017.0 90-91 121843.0 92-93 120011.0 94-95 136992.0 96-97 316099.0 98-99 579476.0 100-101 6090828.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 78.58589901354814 #Duplication Level Percentage of deduplicated Percentage of total 1 87.27503047164956 68.58586731049388 2 7.748414629269767 12.178322591417858 3 2.352737752222564 5.54676034204574 4 1.029003289183525 3.234605942735415 5 0.5313284038952477 2.087746014577083 6 0.30801852748409936 1.452354773710034 7 0.212881903538371 1.1710661041294823 8 0.13029707912658267 0.8191610481601534 9 0.09282864220435674 0.6565520071652734 >10 0.3133378914527367 3.7267901920792954 >50 0.0046569345622912185 0.23833861858997074 >100 0.0012540694865838084 0.17619095113065997 >500 1.8410529558571088E-4 0.09431113907799714 >1k 2.630062876101398E-5 0.03193296468720061 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.8695269154450852E-5 0.0 1.9130179436300567E-5 0.0 3 0.0 2.8695269154450852E-5 0.0 2.8695269154450852E-5 0.0 4 0.0 3.8260358872601134E-5 0.0 2.8695269154450852E-5 0.0 5 0.0 6.695562802705199E-5 0.0 2.8695269154450852E-5 0.0 6 0.0 6.695562802705199E-5 0.0 2.8695269154450852E-5 0.0 7 0.0 6.695562802705199E-5 0.0 3.8260358872601134E-5 0.0 8 0.0 6.695562802705199E-5 0.0 4.782544859075142E-5 0.0 9 0.0 6.695562802705199E-5 0.0 7.652071774520227E-5 0.0 10-11 0.0 9.565089718150284E-5 0.0 7.652071774520227E-5 0.0 12-13 0.0 1.0521598689965312E-4 0.0 1.243461663359537E-4 0.0 14-15 0.0 1.5304143549040456E-4 0.0 1.243461663359537E-4 0.0 16-17 0.0 1.721716149267051E-4 0.0 1.4347634577225427E-4 4.782544859075142E-6 18-19 0.0 1.721716149267051E-4 0.0 1.5304143549040453E-4 9.565089718150283E-6 20-21 0.0 2.2956215323560682E-4 0.0 1.5304143549040453E-4 9.565089718150283E-6 22-23 0.0 2.2956215323560682E-4 0.0 1.721716149267051E-4 9.565089718150283E-6 24-25 0.0 2.5825742239005763E-4 0.0 1.913017943630057E-4 9.565089718150283E-6 26-27 0.0 2.869526915445085E-4 0.0 2.3434469809468196E-4 9.565089718150283E-6 28-29 0.0 3.3477814013525994E-4 0.0 4.543417616121385E-4 9.565089718150283E-6 30-31 0.0 3.873861335850865E-4 0.0 0.0010999853175872826 9.565089718150283E-6 32-33 0.0 4.208639475986125E-4 0.0 0.002290838987496993 9.565089718150283E-6 34-35 9.565089718150283E-6 4.208639475986125E-4 0.0 0.003763862804092137 9.565089718150283E-6 36-37 9.565089718150283E-6 4.3042903731676277E-4 0.0 0.005815574548635373 9.565089718150283E-6 38-39 9.565089718150283E-6 4.3999412703491305E-4 0.0 0.009455091186391556 9.565089718150283E-6 40-41 9.565089718150283E-6 4.3999412703491305E-4 0.0 0.013649383027800454 9.565089718150283E-6 42-43 9.565089718150283E-6 4.4955921675306334E-4 0.0 0.01814975774019016 9.565089718150283E-6 44-45 9.565089718150283E-6 4.5912430647121363E-4 0.0 0.023506207982354324 9.565089718150283E-6 46-47 9.565089718150283E-6 4.5912430647121363E-4 0.0 0.029250044358103567 9.565089718150283E-6 48-49 9.565089718150283E-6 4.782544859075142E-4 0.0 0.03491736001610761 9.565089718150283E-6 50-51 9.565089718150283E-6 4.878195756256645E-4 0.0 0.04064684875727963 9.565089718150283E-6 52-53 9.565089718150283E-6 5.212973896391905E-4 0.0 0.0461372102554979 9.565089718150283E-6 54-55 9.565089718150283E-6 5.643402933708668E-4 0.0 0.05123062053041292 9.565089718150283E-6 56-57 9.565089718150283E-6 5.739053830890171E-4 0.0 0.05661098349687245 9.565089718150283E-6 58-59 9.565089718150283E-6 6.312959213979187E-4 0.0 0.062278299154876496 9.565089718150283E-6 60-61 9.565089718150283E-6 6.408610111160691E-4 0.0 0.0676251843073225 9.565089718150283E-6 62-63 9.565089718150283E-6 6.408610111160691E-4 0.0 0.07267076913364678 9.565089718150283E-6 64-65 9.565089718150283E-6 6.74338825129595E-4 0.0 0.07722375183948632 9.565089718150283E-6 66-67 9.565089718150283E-6 6.982515494249707E-4 0.0 0.082613679895664 9.565089718150283E-6 68-69 9.565089718150283E-6 7.173817288612713E-4 0.0 0.08892185656478412 9.565089718150283E-6 70-71 9.565089718150283E-6 7.173817288612713E-4 0.0 0.0942543940826529 9.565089718150283E-6 72-73 9.565089718150283E-6 7.269468185794216E-4 0.0 0.0986017273595522 9.565089718150283E-6 74-75 9.565089718150283E-6 7.269468185794216E-4 0.0 0.10182516259456885 9.565089718150283E-6 76-77 9.565089718150283E-6 7.269468185794216E-4 0.0 0.10531163779683463 9.565089718150283E-6 78-79 9.565089718150283E-6 7.317293634384967E-4 0.0 0.10749247825257288 9.565089718150283E-6 80-81 9.565089718150283E-6 7.365119082975718E-4 0.0 0.10822899016087045 9.565089718150283E-6 82-83 9.565089718150283E-6 7.365119082975718E-4 0.0 0.10884593844769115 9.565089718150283E-6 84-85 9.565089718150283E-6 7.365119082975718E-4 0.0 0.10914245622895381 9.565089718150283E-6 86-87 9.565089718150283E-6 7.365119082975718E-4 0.0 0.10926680239528977 9.565089718150283E-6 88 9.565089718150283E-6 7.365119082975718E-4 0.0 0.10927158494014884 9.565089718150283E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 24620 0.0 49.504635 1 CTTATAC 12310 0.0 48.339428 1 TATACAC 15735 0.0 40.10947 3 GTATCAA 46520 0.0 36.436256 1 TTATACA 17660 0.0 34.80916 2 TATCAAC 58290 0.0 28.868074 2 ATCAACG 58310 0.0 28.703548 3 TCAACGC 58645 0.0 28.623444 4 CAACGCA 58910 0.0 28.445988 5 AACGCAG 59420 0.0 28.252953 6 TACACAT 23240 0.0 27.385979 5 ACACATC 22840 0.0 26.343077 6 ATACACA 26210 0.0 25.11143 4 ACGCAGA 67320 0.0 24.89521 7 CGCAGAG 67770 0.0 24.808525 8 ACATCTC 24860 0.0 24.285353 8 CACATCT 25490 0.0 23.443932 7 GCAGAGT 74760 0.0 22.417675 9 CATCTCC 28440 0.0 21.170689 9 GTACATG 46225 0.0 20.825674 1 >>END_MODULE