##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139131_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12536034 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.65924589866301 33.0 33.0 33.0 33.0 33.0 2 32.66050578675839 33.0 33.0 33.0 33.0 33.0 3 32.6248786498186 33.0 33.0 33.0 33.0 33.0 4 36.56896846323167 37.0 37.0 37.0 37.0 37.0 5 36.60067083417292 37.0 37.0 37.0 37.0 37.0 6 36.582709172613924 37.0 37.0 37.0 37.0 37.0 7 36.486599111010705 37.0 37.0 37.0 37.0 37.0 8 36.526578820701985 37.0 37.0 37.0 37.0 37.0 9 36.57679103295349 37.0 37.0 37.0 37.0 37.0 10-11 36.5627440065973 37.0 37.0 37.0 37.0 37.0 12-13 36.546827449574565 37.0 37.0 37.0 37.0 37.0 14-15 38.594664269417265 40.0 37.0 40.0 37.0 40.0 16-17 38.53142185957696 40.0 37.0 40.0 37.0 40.0 18-19 38.5828600576546 40.0 37.0 40.0 37.0 40.0 20-21 38.604615759729946 40.0 37.0 40.0 37.0 40.0 22-23 38.58763525347668 40.0 37.0 40.0 37.0 40.0 24-25 38.6012789422295 40.0 37.0 40.0 37.0 40.0 26-27 38.51655909145131 40.0 37.0 40.0 37.0 40.0 28-29 38.39477657812997 40.0 37.0 40.0 37.0 40.0 30-31 38.20916929520345 40.0 37.0 40.0 37.0 40.0 32-33 38.10725648696465 40.0 37.0 40.0 37.0 40.0 34-35 38.07610051988268 40.0 37.0 40.0 37.0 40.0 36-37 38.051965520588745 40.0 37.0 40.0 35.0 40.0 38-39 38.02333824272769 40.0 37.0 40.0 33.0 40.0 40-41 38.001488641512424 40.0 37.0 40.0 33.0 40.0 42-43 37.958673443560436 40.0 37.0 40.0 33.0 40.0 44-45 37.85252296961252 40.0 37.0 40.0 33.0 40.0 46-47 37.764993509689106 40.0 37.0 40.0 33.0 40.0 48-49 37.711680135750306 40.0 37.0 40.0 33.0 40.0 50-51 37.66715138173492 40.0 37.0 40.0 33.0 40.0 52-53 37.61021326302148 40.0 37.0 40.0 33.0 40.0 54-55 37.5127865232605 40.0 37.0 40.0 33.0 40.0 56-57 37.337341601401135 38.5 37.0 40.0 33.0 40.0 58-59 37.128577143076555 37.0 37.0 40.0 33.0 40.0 60-61 36.96489516143459 37.0 37.0 40.0 33.0 40.0 62-63 36.82916498262399 37.0 37.0 40.0 33.0 40.0 64-65 36.67050228274449 37.0 37.0 40.0 33.0 40.0 66-67 36.478216451950885 37.0 37.0 40.0 33.0 40.0 68-69 36.28478494843188 37.0 37.0 40.0 33.0 40.0 70-71 36.0883859917697 37.0 37.0 37.0 33.0 40.0 72-73 35.80614940853266 37.0 37.0 37.0 33.0 40.0 74-75 35.47405159247408 37.0 33.0 37.0 33.0 40.0 76-77 33.27008319571 35.0 33.0 37.0 27.0 37.0 78-79 34.989004296558086 37.0 33.0 37.0 33.0 37.0 80-81 35.23759357726185 37.0 33.0 37.0 33.0 37.0 82-83 35.124969691553545 37.0 33.0 37.0 33.0 37.0 84-85 34.96755732359529 37.0 33.0 37.0 33.0 37.0 86-87 34.86231529929345 37.0 33.0 37.0 33.0 37.0 88-89 34.77395304850457 37.0 33.0 37.0 33.0 37.0 90-91 34.69957310762143 37.0 33.0 37.0 33.0 37.0 92-93 34.68877627860429 37.0 33.0 37.0 33.0 37.0 94-95 34.65503678995311 37.0 33.0 37.0 33.0 37.0 96-97 34.663827768295945 37.0 33.0 37.0 33.0 37.0 98-99 34.6841442055715 37.0 33.0 37.0 33.0 37.0 100 34.53979678178746 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 2.0 16 1.0 17 1.0 18 11.0 19 32.0 20 117.0 21 364.0 22 1280.0 23 3627.0 24 8505.0 25 16813.0 26 30863.0 27 50904.0 28 77368.0 29 112963.0 30 157984.0 31 216806.0 32 296461.0 33 408114.0 34 575597.0 35 861544.0 36 1575525.0 37 3869422.0 38 4117901.0 39 153828.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.45483061070192 20.336511531477978 14.555273222775241 22.653384635044862 2 14.834205223684146 20.86677706888492 42.54151649890954 21.757501208521393 3 18.335870818474167 27.126585649017866 30.615264763959637 23.92227876854833 4 12.239532853851545 18.04804454104065 38.739421096018084 30.973001509089716 5 12.785104124637826 37.86933730396711 35.35477807415008 13.99078049724498 6 28.896651046096395 37.88036950123141 18.884672776094895 14.338306676577298 7 25.486058828493924 33.497292684432736 23.290531917829835 17.726116569243512 8 24.123530615823157 36.16261729985735 21.406195930866172 18.307656153453316 9 25.63822018989419 16.35994286550276 21.88815059052967 36.11368635407339 10-11 24.370059940807433 26.792975354087268 28.39215736013479 20.444807344970506 12-13 25.356472344983256 24.57915290341737 29.02035261680035 21.044022134799032 14-15 22.304418606394975 25.669454151129457 27.888226052992515 24.137901189483056 16-17 20.693543962432134 28.678330696800174 28.310658563199382 22.31746677756831 18-19 20.43210160662468 27.213581042742945 31.46160352321983 20.89271382741255 20-21 21.81062385283117 26.288302231414264 31.392869224279035 20.50820469147553 22-23 21.50696345616152 26.400122166107533 31.059468254304807 21.033446123426145 24-25 20.806920738872954 26.64251029415814 31.45948197809047 21.091086988878438 26-27 20.94311303786833 26.917208101318668 31.276907116528935 20.862771744284068 28-29 20.71412948433908 27.26493108900336 31.085885608752843 20.935053817904723 30-31 21.117551125373893 27.16818959476074 30.886502785891963 20.827756493973407 32-33 20.805904151718924 27.232742829612043 30.906194392488757 21.055158626180273 34-35 20.77390848586984 27.464779838368088 30.785436158761453 20.975875517000624 36-37 21.038448491729504 27.474401873880478 30.514989464665792 20.97216016972422 38-39 21.025313963237107 27.45856032019854 30.466881899131348 21.049243817433005 40-41 21.260256908339432 27.49938236149914 30.22107798715471 21.019282743006716 42-43 21.426726634177744 27.706653731777525 29.663552905957964 21.203066728086768 44-45 21.416496285984092 28.158292480896435 29.008693400870243 21.416517832249227 46-47 21.54366332271754 28.049607271810928 28.476413727465598 21.930315678005936 48-49 21.854371196738686 28.144324939777388 28.019261396001678 21.98204246748225 50-51 21.57249671710357 28.275123479324314 27.952138426551365 22.200241377020753 52-53 21.826884263791637 28.290733067021257 27.70367281448966 22.17870985469744 54-55 21.84326710919678 28.33545629823227 27.640933062884105 22.180343529686844 56-57 21.998976602827796 28.34311317570951 27.444485049444673 22.213425172018024 58-59 21.85789178891088 28.458243786363084 27.695174093960368 21.98869033076567 60-61 22.06377944804655 28.345319293448263 27.45816754101748 22.13273371748771 62-63 22.02382281511974 28.328917784423695 27.361189080942506 22.286070319514057 64-65 21.905617892344576 28.441095911591685 27.43613038795226 22.217155808111478 66-67 22.106373645532855 28.249625137065397 27.245669088208157 22.398332129193594 68-69 22.14494247393726 28.09375987965951 27.340880282230245 22.420417364172987 70-71 22.025625460895917 27.775666030951758 27.384247801431606 22.814460706720723 72-73 22.280612988433663 27.884991008723613 27.5257525548899 22.30864344795282 74-75 22.15744042588016 27.883714752594003 27.405753353350132 22.553091468175708 76-77 22.153659020156645 27.73707790325076 27.280433259046855 22.828829817545742 78-79 22.291247253425873 27.66799824360598 27.302933081950865 22.737821421017287 80-81 22.133845669695297 27.64858440247897 27.420229311405446 22.79734061642029 82-83 22.535500680788175 27.386473717659143 27.5143471112137 22.56367849033898 84-85 22.846183741950586 27.370791607341687 27.287367568892044 22.495657081815686 86-87 22.29159698831898 27.531387166839462 27.40350448315832 22.77351136168324 88-89 22.62543136979914 27.245478333519124 27.434783598897706 22.69430669778403 90-91 22.810820050759606 27.083226470951644 27.362757063509175 22.743196414779575 92-93 22.780112131276177 27.150692817245627 27.35269722273249 22.71649782874571 94-95 22.469027811420872 27.130573062339224 27.59051781143487 22.80988131480503 96-97 22.593884360166825 27.2921911302433 27.49648575167613 22.617438757913742 98-99 23.939709020252742 29.09855762651948 27.550209961530687 19.41152339169709 100 31.078623639133006 40.22631975459372 28.695056606273273 0.0 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3023.0 1 3346.5 2 7707.5 3 12269.0 4 18234.5 5 34725.0 6 47350.0 7 51505.5 8 50279.0 9 43942.0 10 37196.5 11 30740.0 12 32701.0 13 46852.0 14 81247.0 15 130974.5 16 172722.5 17 196507.5 18 199998.0 19 185123.0 20 159470.0 21 130752.5 22 107528.5 23 96875.0 24 98766.5 25 111969.5 26 132159.5 27 151794.5 28 171195.0 29 194693.5 30 216666.5 31 235822.5 32 262338.5 33 295406.0 34 325572.5 35 353710.5 36 384040.0 37 412224.0 38 430727.0 39 441516.0 40 456653.0 41 473881.5 42 491881.5 43 516302.5 44 551142.0 45 584519.5 46 597934.5 47 604903.5 48 606308.5 49 596408.5 50 580388.5 51 554968.5 52 521382.0 53 490945.5 54 450851.0 55 395432.5 56 338272.0 57 279058.0 58 225262.0 59 179062.0 60 141317.0 61 110451.5 62 83381.0 63 62120.0 64 45860.5 65 33887.5 66 26336.0 67 20749.5 68 15672.0 69 11289.5 70 7934.5 71 5461.5 72 3917.5 73 3132.0 74 2421.5 75 1666.0 76 1087.0 77 710.5 78 427.5 79 239.0 80 169.0 81 129.5 82 98.5 83 63.0 84 38.0 85 28.0 86 21.5 87 15.0 88 7.5 89 3.5 90 3.5 91 4.0 92 2.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 4.307582445931464E-4 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.006700683804782278 14-15 0.0 16-17 7.977004529502712E-6 18-19 7.977004529502712E-6 20-21 0.0 22-23 0.0 24-25 1.5961479204546916E-5 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0018215318175867847 36-37 0.03643407636903836 38-39 0.11727833450581432 40-41 0.15341375142119756 42-43 0.05523823931172044 44-45 0.0016891986519160557 46-47 8.786454450361145E-6 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.01006197309882805 64-65 0.07748896288140127 66-67 0.18280763385657076 68-69 0.20133319737490646 70-71 0.08154303502081811 72-73 0.005818401859561235 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 292.0 20-21 1339.0 22-23 3051.0 24-25 6205.0 26-27 11499.0 28-29 23008.0 30-31 52461.0 32-33 66166.0 34-35 86966.0 36-37 120629.0 38-39 152538.0 40-41 160915.0 42-43 192443.0 44-45 222578.0 46-47 211113.0 48-49 177207.0 50-51 149432.0 52-53 137352.0 54-55 140833.0 56-57 141416.0 58-59 140251.0 60-61 136837.0 62-63 134746.0 64-65 140891.0 66-67 157708.0 68-69 139124.0 70-71 142058.0 72-73 137193.0 74-75 133535.0 76-77 127168.0 78-79 133226.0 80-81 140983.0 82-83 133555.0 84-85 142385.0 86-87 156962.0 88-89 163016.0 90-91 160819.0 92-93 157303.0 94-95 174717.0 96-97 371104.0 98-99 2418543.0 100-101 4936467.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 77.13083611223036 #Duplication Level Percentage of deduplicated Percentage of total 1 87.58200544830706 67.55273308613837 2 7.465358611977652 11.516187032389515 3 2.1775654869134233 5.0387234008430495 4 0.9965088898551161 3.074462554711823 5 0.5115487975708088 1.972809323442128 6 0.3405709358500171 1.5761112622581952 7 0.2214953455925468 1.1958884840364385 8 0.15064822763969807 0.9295699005340419 9 0.10926989054702327 0.758527021780542 >10 0.43123376342942926 5.3252942699988015 >50 0.009692620164480957 0.496610789534278 >100 0.003969686578815729 0.48430753017977574 >500 1.0583653642741472E-4 0.054673405327166115 >1k 2.645903757124657E-5 0.024101938825928898 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 7.977004529502712E-6 2 0.0 0.0 0.0 2.3931013588508135E-5 7.977004529502712E-6 3 0.0 0.0 0.0 2.3931013588508135E-5 7.977004529502712E-6 4 0.0 0.0 0.0 3.190801811801085E-5 7.977004529502712E-6 5 0.0 0.0 0.0 3.988502264751356E-5 7.977004529502712E-6 6 0.0 0.0 0.0 3.988502264751356E-5 7.977004529502712E-6 7 0.0 0.0 0.0 7.17930407655244E-5 7.977004529502712E-6 8 0.0 0.0 0.0 7.17930407655244E-5 7.977004529502712E-6 9 3.190801811801085E-5 0.0 0.0 1.1167806341303796E-4 1.5954009059005424E-5 10-11 3.190801811801085E-5 0.0 0.0 1.356090770015461E-4 1.5954009059005424E-5 12-13 3.190801811801085E-5 0.0 0.0 2.2335612682607592E-4 1.5954009059005424E-5 14-15 3.190801811801085E-5 0.0 0.0 2.3532163362033E-4 2.791951585325949E-5 16-17 3.190801811801085E-5 0.0 0.0 3.111031766506058E-4 3.190801811801085E-5 18-19 3.190801811801085E-5 0.0 0.0 4.0283872873988694E-4 3.190801811801085E-5 20-21 3.988502264751356E-5 0.0 0.0 4.3075824459314646E-4 3.988502264751356E-5 22-23 3.988502264751356E-5 0.0 0.0 5.224937966824277E-4 3.988502264751356E-5 24-25 3.988502264751356E-5 0.0 0.0 6.341718600954655E-4 5.185052944176763E-5 26-27 3.988502264751356E-5 0.0 0.0 8.814590005100497E-4 6.38160362360217E-5 28-29 3.988502264751356E-5 0.0 0.0 0.001523607865135018 6.38160362360217E-5 30-31 3.988502264751356E-5 0.0 0.0 0.0036813875903655017 6.38160362360217E-5 32-33 3.988502264751356E-5 0.0 0.0 0.008846498023218508 6.38160362360217E-5 34-35 3.988502264751356E-5 0.0 0.0 0.01520815913549692 6.38160362360217E-5 36-37 3.988502264751356E-5 0.0 0.0 0.023771473497918083 6.38160362360217E-5 38-39 3.988502264751356E-5 0.0 0.0 0.03675803687194849 6.38160362360217E-5 40-41 3.988502264751356E-5 0.0 0.0 0.04999587588865825 6.38160362360217E-5 42-43 3.988502264751356E-5 0.0 0.0 0.06246792247053574 6.38160362360217E-5 44-45 3.988502264751356E-5 0.0 0.0 0.0760407956774846 6.38160362360217E-5 46-47 3.988502264751356E-5 0.0 0.0 0.0892826231964591 6.38160362360217E-5 48-49 3.988502264751356E-5 0.0 0.0 0.10140368157903848 6.38160362360217E-5 50-51 3.988502264751356E-5 0.0 0.0 0.11239200531842847 6.38160362360217E-5 52-53 3.988502264751356E-5 0.0 0.0 0.12296552482228432 7.17930407655244E-5 54-55 3.988502264751356E-5 3.988502264751356E-6 0.0 0.13190774689985685 7.17930407655244E-5 56-57 3.988502264751356E-5 7.977004529502712E-6 0.0 0.13865629273181612 7.17930407655244E-5 58-59 3.988502264751356E-5 7.977004529502712E-6 0.0 0.14564016019739576 7.17930407655244E-5 60-61 3.988502264751356E-5 7.977004529502712E-6 0.0 0.15235679801123705 7.17930407655244E-5 62-63 3.988502264751356E-5 7.977004529502712E-6 0.0 0.15946430904702397 7.17930407655244E-5 64-65 3.988502264751356E-5 7.977004529502712E-6 0.0 0.16624077439483653 7.17930407655244E-5 66-67 3.988502264751356E-5 7.977004529502712E-6 0.0 0.17311695229926785 7.977004529502712E-5 68-69 3.988502264751356E-5 7.977004529502712E-6 0.0 0.18028429086902603 7.977004529502712E-5 70-71 3.988502264751356E-5 7.977004529502712E-6 0.0 0.186123458184622 7.977004529502712E-5 72-73 3.988502264751356E-5 7.977004529502712E-6 0.0 0.1908418563638229 7.977004529502712E-5 74-75 3.988502264751356E-5 7.977004529502712E-6 0.0 0.19465486452892516 7.977004529502712E-5 76-77 3.988502264751356E-5 7.977004529502712E-6 0.0 0.1984399531781742 7.977004529502712E-5 78-79 3.988502264751356E-5 7.977004529502712E-6 0.0 0.20070941096681771 7.977004529502712E-5 80-81 3.988502264751356E-5 7.977004529502712E-6 0.0 0.20147919190391475 7.977004529502712E-5 82-83 3.988502264751356E-5 7.977004529502712E-6 0.0 0.20216521429345197 7.977004529502712E-5 84-85 3.988502264751356E-5 7.977004529502712E-6 0.0 0.2025560875153976 7.977004529502712E-5 86-87 3.988502264751356E-5 7.977004529502712E-6 0.0 0.20276747813542945 7.977004529502712E-5 88 3.988502264751356E-5 7.977004529502712E-6 0.0 0.20278343214448843 7.977004529502712E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 36770 0.0 40.36397 1 GTATCAA 62850 0.0 33.083317 1 TATCAAC 78935 0.0 26.22097 2 ATCAACG 79840 0.0 25.729593 3 AACGCAG 80510 0.0 25.509165 6 TCAACGC 81155 0.0 25.351843 4 CAACGCA 81495 0.0 25.226576 5 ACGGTAC 1895 0.0 23.898714 3 GGTTCAC 8095 0.0 23.608465 6 GTACTGG 10070 0.0 23.117922 1 ACGCAGA 89245 0.0 22.919197 7 CGCAGAG 89745 0.0 22.857914 8 TACTGGT 9080 0.0 22.750877 2 GCAGAGT 99355 0.0 20.507042 9 GTACATG 59435 0.0 20.306082 1 TACATGG 58705 0.0 20.206697 2 TAGCGCG 405 8.4944095E-6 19.935417 94 CTCACGA 1480 0.0 19.775461 94 GAGTACT 65055 0.0 19.444948 12-13 ACATGGG 59655 0.0 19.378717 3 >>END_MODULE