##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139130_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8612248 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.68275762611574 33.0 33.0 33.0 33.0 33.0 2 32.696964950382295 33.0 33.0 33.0 33.0 33.0 3 32.66504471306446 33.0 33.0 33.0 33.0 33.0 4 36.61128116607882 37.0 37.0 37.0 37.0 37.0 5 36.63879837180722 37.0 37.0 37.0 37.0 37.0 6 36.61266942150296 37.0 37.0 37.0 37.0 37.0 7 36.512034836897406 37.0 37.0 37.0 37.0 37.0 8 36.551585137817675 37.0 37.0 37.0 37.0 37.0 9 36.60452416140362 37.0 37.0 37.0 37.0 37.0 10-11 36.5875430549608 37.0 37.0 37.0 37.0 37.0 12-13 36.57347529936435 37.0 37.0 37.0 37.0 37.0 14-15 38.68504715609676 40.0 37.0 40.0 37.0 40.0 16-17 38.621029027496654 40.0 37.0 40.0 37.0 40.0 18-19 38.65572676262922 40.0 37.0 40.0 37.0 40.0 20-21 38.67042884191983 40.0 37.0 40.0 37.0 40.0 22-23 38.64799534897976 40.0 37.0 40.0 37.0 40.0 24-25 38.66963175217833 40.0 37.0 40.0 37.0 40.0 26-27 38.59255250218304 40.0 37.0 40.0 37.0 40.0 28-29 38.471915075418785 40.0 37.0 40.0 37.0 40.0 30-31 38.32746597691944 40.0 37.0 40.0 37.0 40.0 32-33 38.22366400690332 40.0 37.0 40.0 37.0 40.0 34-35 38.177203727993245 40.0 37.0 40.0 37.0 40.0 36-37 38.15537140181701 40.0 37.0 40.0 37.0 40.0 38-39 38.10893946020343 40.0 37.0 40.0 37.0 40.0 40-41 38.10155142873245 40.0 37.0 40.0 37.0 40.0 42-43 38.07275203845642 40.0 37.0 40.0 37.0 40.0 44-45 37.97982484604563 40.0 37.0 40.0 33.0 40.0 46-47 37.900106841851915 40.0 37.0 40.0 33.0 40.0 48-49 37.847587852132634 40.0 37.0 40.0 33.0 40.0 50-51 37.77895299476765 40.0 37.0 40.0 33.0 40.0 52-53 37.72009486219666 40.0 37.0 40.0 33.0 40.0 54-55 37.63634404432095 40.0 37.0 40.0 33.0 40.0 56-57 37.47502590767091 40.0 37.0 40.0 33.0 40.0 58-59 37.27319595710776 38.5 37.0 40.0 33.0 40.0 60-61 37.12095735235636 37.0 37.0 40.0 33.0 40.0 62-63 36.99047485342183 37.0 37.0 40.0 33.0 40.0 64-65 36.85171410247483 37.0 37.0 40.0 33.0 40.0 66-67 36.66221818069638 37.0 37.0 40.0 33.0 40.0 68-69 36.46735912543021 37.0 37.0 40.0 33.0 40.0 70-71 36.25846917181623 37.0 37.0 40.0 33.0 40.0 72-73 35.96684796128383 37.0 37.0 37.0 33.0 40.0 74-75 35.62777416810782 37.0 35.0 37.0 33.0 40.0 76-77 33.49022778324398 35.0 33.0 37.0 27.0 37.0 78-79 35.11705085273259 37.0 33.0 37.0 33.0 37.0 80-81 35.32101272427022 37.0 33.0 37.0 33.0 37.0 82-83 35.18317948689965 37.0 33.0 37.0 33.0 37.0 84-85 35.010833108942464 37.0 33.0 37.0 33.0 37.0 86-87 34.89561319838377 37.0 33.0 37.0 33.0 37.0 88-89 34.79785763844329 37.0 33.0 37.0 33.0 37.0 90-91 34.712093818400334 37.0 33.0 37.0 33.0 37.0 92-93 34.695741953836816 37.0 33.0 37.0 33.0 37.0 94-95 34.653820151061325 37.0 33.0 37.0 33.0 37.0 96-97 34.65919382102433 37.0 33.0 37.0 33.0 37.0 98-99 34.67824614569875 37.0 33.0 37.0 33.0 37.0 100 34.63271422590914 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 4.0 18 2.0 19 18.0 20 52.0 21 264.0 22 909.0 23 2698.0 24 6287.0 25 13156.0 26 23460.0 27 37990.0 28 56408.0 29 80282.0 30 109496.0 31 147041.0 32 198321.0 33 268479.0 34 377910.0 35 564973.0 36 1026697.0 37 2569526.0 38 3041257.0 39 87017.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.275800296461576 21.51984511357432 15.191635259838144 23.012719330125964 2 14.132954460480072 20.88180133048281 43.54500330460978 21.44024090442734 3 17.66330176820309 27.176569271244688 31.414801667300264 23.745327293251957 4 11.799523608591764 18.2661874730471 39.36456297230711 30.569725946054028 5 12.481262146947497 38.23538017841106 36.154715041813716 13.12864263282772 6 28.510201809121362 38.64942563769943 18.92745296320461 13.912919589974601 7 25.12477578444095 33.581708283365735 23.374675229974798 17.918840702218514 8 23.478666661712484 37.45140641560717 21.696298109390256 17.373628813290097 9 24.713942283129793 17.260835962921643 21.641341494113963 36.3838802598346 10-11 23.621387818836613 27.139505272026536 29.21431779484288 20.024789114293966 12-13 24.55197545701235 24.514015320265283 29.50838603752085 21.425623185201516 14-15 21.638113533191333 26.09051666881864 27.37286478512927 24.898505012860753 16-17 20.752200819112502 29.40591120924525 27.996807569870256 21.845080401771988 18-19 20.596579429668072 27.862928471172683 30.412408003113704 21.128084096045537 20-21 21.481544313555688 27.184619451381938 30.469226124113387 20.86461011094899 22-23 21.17670427763563 27.380203220701716 30.360021780863107 21.08307072079955 24-25 20.944157295938577 27.79994765180237 30.46989156884482 20.786003483414234 26-27 20.966731950306976 27.93573779992486 30.41811757828968 20.67941267147848 28-29 20.73696943656797 27.753203333583855 30.453551801081915 21.056275428766266 30-31 21.54459245815048 27.647421238029914 30.38385816289779 20.42412814092182 32-33 21.266355990315855 27.741106539597236 30.50876751053081 20.4837699595561 34-35 20.927495906940745 27.849612957417747 30.683679858851924 20.539211276789583 36-37 21.072547331726636 27.49450999647732 30.5148431973363 20.918099474459748 38-39 20.845222078701493 27.52397063132477 30.5524680540756 21.07833923589815 40-41 20.98900270475696 27.53566161004139 30.600063443091457 20.875272242110192 42-43 21.178166674197026 27.476779427523628 30.35300684898608 20.992047049293262 44-45 20.956091793411083 27.935406627135546 29.866878056645348 21.241623522808023 46-47 21.40128989883984 27.571001274501374 29.282826830810095 21.744881995848697 48-49 21.327737370683245 27.667543345937677 29.334940662820426 21.66977862055865 50-51 21.00809555226942 27.95777474595483 29.43923442550256 21.594895276273192 52-53 21.24969224079325 28.121499047630717 29.382687090037173 21.246121621538858 54-55 21.204585663232766 28.203525779363137 29.0074834672524 21.5844050901517 56-57 21.47145459098369 28.55091233480428 28.4951098020617 21.48252327215033 58-59 21.031414773390022 28.918109315793572 29.035072330250866 21.01540358056554 60-61 21.42556874319442 29.197701020149296 28.348242767995345 21.028487468660934 62-63 21.120371030120406 29.29005327801706 28.371991112668194 21.21758457919434 64-65 21.19077302395505 29.023837029069664 28.483881408313007 21.30150853866228 66-67 21.39650234683955 28.858778409716514 28.27579483102618 21.468924412417753 68-69 21.38814701346609 28.53669918849529 28.58575083459329 21.489402963445333 70-71 21.468913739199134 28.12004048702183 28.6370676241387 21.77397814964033 72-73 21.491712356412982 28.233581814949638 28.667976616503854 21.606729212133523 74-75 21.388913428089136 28.374990662786935 28.587193539023755 21.64890237010018 76-77 21.385462158475303 28.310106276283886 28.37716590650363 21.92726565873718 78-79 21.5223087798245 28.258826923554654 28.42808012399051 21.79078417263033 80-81 21.584880622616204 28.152658313046032 28.47677937505775 21.785681689280022 82-83 21.70091977348047 28.05978811995275 28.49835405364056 21.740938052926218 84-85 21.978638363400663 28.03026789166686 28.30038953809508 21.6907042068374 86-87 21.48413179490087 28.168923267329433 28.468050244773664 21.87889469299603 88-89 21.730496319996366 27.97766700882679 28.46215128394122 21.829685387235624 90-91 21.86396192633815 27.902574281723254 28.461251848953328 21.772211942985276 92-93 21.9828887365587 27.97470009898595 28.244863960544674 21.79754720391068 94-95 21.833786489093406 27.96073127774823 28.35980729149692 21.845674941661443 96-97 21.87309625245442 27.9881975804427 28.55032195310227 21.588384214000612 98-99 22.979106644497254 29.91140380848088 28.702359826426083 18.40712972059578 100 22.127574682951085 30.73141999051282 22.44185531482 24.699150011716092 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1673.0 1 1647.0 2 3140.0 3 4915.0 4 6659.5 5 11575.0 6 15791.0 7 18409.5 8 19844.5 9 18859.0 10 16620.0 11 14205.5 12 15045.5 13 20301.5 14 33519.0 15 53275.0 16 70141.5 17 79713.5 18 81114.0 19 75592.0 20 66586.0 21 56022.0 22 47583.0 23 45064.5 24 48360.5 25 57656.5 26 72199.5 27 89125.0 28 103617.0 29 121355.0 30 140108.0 31 157441.0 32 180356.5 33 203963.0 34 227803.5 35 251339.0 36 279573.5 37 305679.0 38 316034.5 39 322832.0 40 337674.5 41 347710.0 42 348852.0 43 357130.0 44 368892.5 45 378140.5 46 387485.5 47 393169.0 48 404600.5 49 398141.0 50 370335.5 51 346889.0 52 316669.0 53 280432.5 54 242033.5 55 202431.5 56 168314.0 57 139905.5 58 114330.0 59 92799.0 60 72312.0 61 54380.0 62 40741.0 63 29915.0 64 22383.5 65 16657.5 66 12446.5 67 9478.0 68 7152.0 69 5243.5 70 3886.0 71 2806.5 72 2048.5 73 1577.5 74 1203.0 75 843.5 76 550.5 77 369.5 78 242.0 79 155.0 80 91.5 81 60.0 82 48.5 83 38.0 84 31.5 85 26.5 86 21.0 87 17.5 88 12.0 89 8.0 90 6.0 91 4.0 92 3.5 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.32227404505769E-5 2 4.180093281103842E-4 3 2.32227404505769E-5 4 2.32227404505769E-5 5 2.32227404505769E-5 6 1.161137022528845E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.006763623156230522 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 2.9037154665475136E-5 26-27 0.0 28-29 1.162507573010271E-5 30-31 1.1638888809679784E-5 32-33 1.1662023820616614E-5 34-35 0.00168915660819691 36-37 0.037148213104707783 38-39 0.11889314044511734 40-41 0.15530339211606375 42-43 0.05522708615912023 44-45 0.0016361555503830215 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.008805560988728882 64-65 0.07177931985650315 66-67 0.17638822970429713 68-69 0.19550569581545363 70-71 0.07538793766254605 72-73 0.005166677348969072 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 132.0 20-21 569.0 22-23 1399.0 24-25 2467.0 26-27 3994.0 28-29 7827.0 30-31 16453.0 32-33 19108.0 34-35 24697.0 36-37 27193.0 38-39 29403.0 40-41 41263.0 42-43 50092.0 44-45 59473.0 46-47 62158.0 48-49 50098.0 50-51 42769.0 52-53 38545.0 54-55 58405.0 56-57 63748.0 58-59 64254.0 60-61 76368.0 62-63 82740.0 64-65 94895.0 66-67 106188.0 68-69 89021.0 70-71 77842.0 72-73 73278.0 74-75 74422.0 76-77 69690.0 78-79 73427.0 80-81 77775.0 82-83 79430.0 84-85 81953.0 86-87 88312.0 88-89 95604.0 90-91 95953.0 92-93 97437.0 94-95 106333.0 96-97 280740.0 98-99 527657.0 100-101 5599136.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 76.97984908044944 #Duplication Level Percentage of deduplicated Percentage of total 1 85.79549826640034 66.0452450832946 2 8.72119039989378 13.427118415713753 3 2.662787263062558 6.149428849316962 4 1.131545483678034 3.484248022447969 5 0.589216396766541 2.267889464940727 6 0.33507608942665273 1.5476464076718544 7 0.2082975552639338 1.122430005763094 8 0.13660601761947788 0.8412728495862897 9 0.09214357599122001 0.6383878716183337 >10 0.3189373689223435 3.693731854012605 >50 0.006220069386423394 0.320170323253235 >100 0.0022851122090641433 0.31602905363166717 >500 9.820071808236964E-5 0.05362187784664571 >1k 9.820066147031044E-5 0.0927799209022371 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 1.161137022528845E-5 0.0 10-11 0.0 0.0 0.0 5.2251166013798023E-5 0.0 12-13 0.0 0.0 0.0 6.96682213517307E-5 0.0 14-15 0.0 0.0 0.0 8.708527668966338E-5 0.0 16-17 0.0 0.0 0.0 1.3353075759081715E-4 0.0 18-19 0.0 0.0 0.0 2.0319897894254788E-4 0.0 20-21 0.0 0.0 0.0 3.1931268119543235E-4 5.805685112644225E-6 22-23 0.0 0.0 0.0 8.476300264460568E-4 1.161137022528845E-5 24-25 0.0 0.0 0.0 0.0019855443085243247 1.161137022528845E-5 26-27 0.0 0.0 0.0 0.00366919299119115 1.161137022528845E-5 28-29 0.0 0.0 0.0 0.00813376484281456 1.161137022528845E-5 30-31 0.0 0.0 0.0 0.008923338018134174 1.161137022528845E-5 32-33 0.0 0.0 0.0 0.010444427517646961 1.161137022528845E-5 34-35 0.0 0.0 0.0 0.012006156812948258 1.161137022528845E-5 36-37 0.0 0.0 0.0 0.01448518435604734 1.161137022528845E-5 38-39 0.0 0.0 0.0 0.02047665139229618 1.161137022528845E-5 40-41 0.0 0.0 0.0 0.026619066241473772 1.161137022528845E-5 42-43 0.0 0.0 0.0 0.030874633429041988 1.161137022528845E-5 44-45 0.0 0.0 0.0 0.035942996532380395 1.161137022528845E-5 46-47 0.0 0.0 0.0 0.041319060946688954 1.161137022528845E-5 48-49 0.0 0.0 0.0 0.04779239984728726 1.161137022528845E-5 50-51 0.0 0.0 0.0 0.05448054909705341 1.161137022528845E-5 52-53 0.0 0.0 0.0 0.0740399022415518 1.161137022528845E-5 54-55 0.0 0.0 0.0 0.09854569910202307 1.161137022528845E-5 56-57 0.0 0.0 0.0 0.12796310556779136 1.161137022528845E-5 58-59 0.0 0.0 0.0 0.14469509006243203 1.161137022528845E-5 60-61 0.0 0.0 0.0 0.15691025153943547 1.161137022528845E-5 62-63 0.0 0.0 0.0 0.1698453179704068 1.161137022528845E-5 64-65 0.0 0.0 0.0 0.17465823092878885 1.161137022528845E-5 66-67 0.0 0.0 0.0 0.17999946123242155 1.161137022528845E-5 68-69 0.0 0.0 0.0 0.18616509882204973 1.161137022528845E-5 70-71 0.0 0.0 0.0 0.19102445726133294 1.161137022528845E-5 72-73 0.0 0.0 0.0 0.19490265491657927 1.161137022528845E-5 74-75 0.0 0.0 0.0 0.1980551419327451 1.161137022528845E-5 76-77 0.0 0.0 0.0 0.20117279483823503 1.161137022528845E-5 78-79 0.0 0.0 0.0 0.20336734381081456 1.161137022528845E-5 80-81 0.0 0.0 0.0 0.20411627719034564 1.161137022528845E-5 82-83 0.0 0.0 0.0 0.20477812529318712 1.161137022528845E-5 84-85 0.0 0.0 0.0 0.205155494825509 1.161137022528845E-5 86-87 0.0 0.0 0.0 0.2054109449704653 1.161137022528845E-5 88 0.0 0.0 0.0 0.20542836202580325 1.161137022528845E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14570 0.0 52.015324 1 CTTATAC 10250 0.0 40.85381 1 GTATCAA 27700 0.0 38.3963 1 TATACAC 13175 0.0 34.15601 3 ATCAACG 34525 0.0 30.222954 3 TCAACGC 34870 0.0 29.997602 4 TATCAAC 35445 0.0 29.716501 2 CAACGCA 35450 0.0 29.50681 5 TTATACA 15070 0.0 29.264528 2 AACGCAG 35985 0.0 29.143406 6 ACGCAGA 40235 0.0 26.054514 7 CGCAGAG 40460 0.0 25.877869 8 GCAGAGT 46275 0.0 22.598248 9 TACACAT 20755 0.0 21.764303 5 ATACACA 22780 0.0 20.731792 4 ACATGGG 25535 0.0 20.607773 3 GAGTACT 33060 0.0 20.43858 12-13 GTACATG 27715 0.0 20.300093 1 ACACATC 20985 0.0 20.181822 6 TACATGG 26995 0.0 20.064333 2 >>END_MODULE