##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139129_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8564386 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.64587852532569 33.0 33.0 33.0 33.0 33.0 2 32.654644127436576 33.0 33.0 33.0 33.0 33.0 3 32.62171742375927 33.0 33.0 33.0 33.0 33.0 4 36.56155397479749 37.0 37.0 37.0 37.0 37.0 5 36.58907176766671 37.0 37.0 37.0 37.0 37.0 6 36.56645777058624 37.0 37.0 37.0 37.0 37.0 7 36.47061447253779 37.0 37.0 37.0 37.0 37.0 8 36.50752920291075 37.0 37.0 37.0 37.0 37.0 9 36.56035820898311 37.0 37.0 37.0 37.0 37.0 10-11 36.5415941084393 37.0 37.0 37.0 37.0 37.0 12-13 36.52915626409178 37.0 37.0 37.0 37.0 37.0 14-15 38.58348438522037 40.0 37.0 40.0 37.0 40.0 16-17 38.524741411701896 40.0 37.0 40.0 37.0 40.0 18-19 38.56280485256036 40.0 37.0 40.0 37.0 40.0 20-21 38.57765009076553 40.0 37.0 40.0 37.0 40.0 22-23 38.56066495871022 40.0 37.0 40.0 37.0 40.0 24-25 38.57856698878156 40.0 37.0 40.0 37.0 40.0 26-27 38.497416808734485 40.0 37.0 40.0 37.0 40.0 28-29 38.38187420850555 40.0 37.0 40.0 37.0 40.0 30-31 38.227986123585524 40.0 37.0 40.0 37.0 40.0 32-33 38.13071802996464 40.0 37.0 40.0 37.0 40.0 34-35 38.10295957629268 40.0 37.0 40.0 37.0 40.0 36-37 38.08121395335388 40.0 37.0 40.0 37.0 40.0 38-39 38.05333680277839 40.0 37.0 40.0 37.0 40.0 40-41 38.03191462759149 40.0 37.0 40.0 35.0 40.0 42-43 37.98829431947739 40.0 37.0 40.0 33.0 40.0 44-45 37.890812814560356 40.0 37.0 40.0 33.0 40.0 46-47 37.805204276276584 40.0 37.0 40.0 33.0 40.0 48-49 37.752805100767915 40.0 37.0 40.0 33.0 40.0 50-51 37.723913660025644 40.0 37.0 40.0 33.0 40.0 52-53 37.66838997567865 40.0 37.0 40.0 33.0 40.0 54-55 37.581542682718776 40.0 37.0 40.0 33.0 40.0 56-57 37.42214537393525 40.0 37.0 40.0 33.0 40.0 58-59 37.22299782873619 38.5 37.0 40.0 33.0 40.0 60-61 37.06731695676875 37.0 37.0 40.0 33.0 40.0 62-63 36.9391178093169 37.0 37.0 40.0 33.0 40.0 64-65 36.7774539258303 37.0 37.0 40.0 33.0 40.0 66-67 36.571482276141765 37.0 37.0 40.0 33.0 40.0 68-69 36.3703241952066 37.0 37.0 40.0 33.0 40.0 70-71 36.15445186151553 37.0 37.0 38.5 33.0 40.0 72-73 35.86284122151617 37.0 37.0 37.0 33.0 40.0 74-75 35.51983603711564 37.0 33.0 37.0 33.0 40.0 76-77 33.36566982212292 35.0 33.0 37.0 27.0 37.0 78-79 35.021058447786835 37.0 33.0 37.0 33.0 37.0 80-81 35.23550512624863 37.0 33.0 37.0 33.0 37.0 82-83 35.10301609757917 37.0 33.0 37.0 33.0 37.0 84-85 34.93415017439142 37.0 33.0 37.0 33.0 37.0 86-87 34.82282774108556 37.0 33.0 37.0 33.0 37.0 88-89 34.7299973737674 37.0 33.0 37.0 33.0 37.0 90-91 34.64650205103193 37.0 33.0 37.0 33.0 37.0 92-93 34.6360155935984 37.0 33.0 37.0 33.0 37.0 94-95 34.59954835906969 37.0 33.0 37.0 33.0 37.0 96-97 34.60806970210305 37.0 33.0 37.0 33.0 37.0 98-99 34.62788309259366 37.0 33.0 37.0 33.0 37.0 100 34.587471482061325 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 2.0 18 3.0 19 17.0 20 45.0 21 271.0 22 980.0 23 2900.0 24 6764.0 25 13522.0 26 24035.0 27 38643.0 28 58585.0 29 83383.0 30 114781.0 31 154776.0 32 208615.0 33 281309.0 34 392810.0 35 576277.0 36 1026070.0 37 2525328.0 38 2963532.0 39 91737.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.3711083749738 20.601782848388996 15.041161741327603 22.985947035309596 2 14.12923187003626 20.99215142571107 43.074040109019265 21.804576595233407 3 17.955731789264494 27.027217949683486 31.133817547903327 23.883232713148697 4 12.054525806581557 18.18968904363828 39.824342319968096 29.931442829812067 5 12.592801467939612 38.09559005112451 35.93624060571775 13.375367875218128 6 28.318367284983104 38.57275215908673 19.225466860726133 13.883413695204034 7 25.2391502717358 33.54418326593211 23.97755355463352 17.239112907698566 8 23.608793859687534 36.94658752496531 21.50336539050965 17.94125322483751 9 25.296305572437483 17.264111783858386 22.288103582452212 35.15147906125192 10-11 23.799411890122656 27.03352581259182 29.071021553675884 20.09604074360964 12-13 24.857143557762974 24.70061334620606 29.628448306262538 20.813794789768426 14-15 21.9136141224835 25.87638506718403 28.07113668160216 24.138864128730305 16-17 20.487545750506808 29.092400786232663 28.69648215295294 21.723571310307594 18-19 20.34196613744406 27.940304185262082 31.150061428805287 20.567668248488566 20-21 21.339766505668038 27.00797348415404 31.08167046840162 20.570589541776307 22-23 21.104785557181327 26.757461023562456 31.06513288335006 21.07262053590616 24-25 20.736915477136268 27.07990222498499 31.2211169919866 20.96206530589214 26-27 20.714958017726538 27.224206109651227 31.256389616816428 20.804446255805807 28-29 20.547477495383962 27.500268194119432 31.097772052663615 20.85448225783299 30-31 20.847097631584486 27.294722837056355 30.947866095952648 20.91031343540651 32-33 20.61867763376961 27.46134925871332 30.878663193818678 21.04130991369839 34-35 20.77422384775768 27.59218505408007 30.774732811663043 20.858858286499206 36-37 20.840774200169673 27.484285388137074 30.773877075494045 20.90106333619921 38-39 20.786638791986455 27.680513329812463 30.6830167086372 20.849831169563878 40-41 20.932402564227655 27.718564401521522 30.496483741676812 20.852549292574007 42-43 20.95109105654976 27.838081042210266 29.954466630674048 21.25636127056593 44-45 21.027201382874395 28.102762988821013 29.562898007518108 21.307137620786484 46-47 21.25406939710678 28.06632844884614 29.148461826130756 21.53114032791632 48-49 21.333449736487704 28.17878636260911 28.92989759610144 21.557866304801745 50-51 21.099273965695946 28.33445212879335 28.88533323956925 21.68094066594145 52-53 21.323566466569705 28.364965512130897 28.554767653341568 21.756700367957833 54-55 21.31251262708873 28.287332439227058 28.62416809912566 21.77598683455855 56-57 21.399149189229014 28.325437826631227 28.42200203678062 21.853410947359137 58-59 21.41023956437263 28.317693426703656 28.547926547910542 21.724140461013178 60-61 21.550600202915685 28.34303792323057 28.53150103881209 21.574860835041658 62-63 21.393215501388983 28.36769086199779 28.579952913445645 21.65914072316758 64-65 21.352445067623908 28.390475047059716 28.469256704288743 21.787823181027637 66-67 21.413331945673104 28.44835831504889 28.182599089006633 21.955710650271378 68-69 21.422772588335448 28.347787069325353 28.25782096802228 21.97161937431692 70-71 21.562242772929714 28.055293199868792 28.299375383770858 22.083088643430635 72-73 21.591295201139346 28.024224084660908 28.437787406712495 21.946693307487244 74-75 21.44572864219168 28.219124285665607 28.34217341707751 21.992973655065203 76-77 21.509420040716805 28.092553959115158 28.190881347862096 22.207144652305942 78-79 21.660110683280205 28.008726449678623 28.14563763532398 22.185525231717193 80-81 21.616937098215097 28.04497540979714 28.227243160134876 22.110844331852896 82-83 21.83254686693807 27.7869243338551 28.38351952453789 21.99700927466894 84-85 22.022073782851937 27.858628550432744 28.1019444064825 22.017353260232817 86-87 21.626345734600747 28.00637017599989 28.23242133626009 22.134862753139277 88-89 21.83303064627782 27.812215770403142 28.180553830890265 22.174199752428777 90-91 21.980653336007688 27.56752302705972 28.300429208172197 22.151394428760398 92-93 22.005775940140644 27.718804671712903 28.1675820445295 22.10783734361695 94-95 21.811907510313223 27.54478930187861 28.342017300590143 22.30128588721803 96-97 21.951257624401567 27.714956400458462 28.35639108286248 21.977394892277484 98-99 23.04894488775023 29.64771460299669 28.57788726985906 18.72545323939402 100 22.09276539190573 30.444591940589316 22.127508255807076 25.33513441169788 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1819.0 1 1885.5 2 3710.0 3 5792.5 4 8318.5 5 15196.5 6 20774.0 7 23378.5 8 24073.5 9 22244.0 10 19495.0 11 16676.5 12 17765.5 13 24298.5 14 40209.5 15 63453.0 16 83580.0 17 95254.0 18 96982.5 19 90421.0 20 79373.5 21 66485.5 22 56295.0 23 52811.5 24 56099.5 25 66279.5 26 80580.0 27 95244.5 28 110257.5 29 128516.0 30 147659.5 31 165316.5 32 187885.5 33 211754.0 34 232552.0 35 253506.5 36 280010.5 37 305573.5 38 317506.5 39 323972.5 40 335454.0 41 346142.5 42 357705.0 43 373995.5 44 391744.5 45 409805.5 46 420427.5 47 423987.5 48 419986.0 49 403440.5 50 379428.5 51 351055.0 52 319840.5 53 288501.5 54 256629.5 55 221958.5 56 187571.5 57 155558.0 58 126962.0 59 103319.0 60 80337.5 61 60768.0 62 45843.0 63 33831.5 64 24923.5 65 18172.5 66 13527.5 67 10298.5 68 7679.5 69 5581.0 70 4071.5 71 2967.5 72 2159.0 73 1510.5 74 1054.5 75 734.0 76 512.0 77 347.5 78 221.0 79 144.0 80 101.0 81 71.5 82 56.0 83 36.5 84 27.0 85 20.5 86 14.0 87 12.0 88 9.0 89 5.5 90 3.5 91 2.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.1676260271314254E-5 2 3.269352875967991E-4 3 1.1676260271314254E-5 4 1.1676260271314254E-5 5 1.1676260271314254E-5 6 1.1676260271314254E-5 7 1.1676260271314254E-5 8 1.1676260271314254E-5 9 1.1676260271314254E-5 10-11 0.0 12-13 0.006351885587594953 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.1682438835277203E-5 26-27 0.0 28-29 5.849380670499298E-6 30-31 1.1720737260159286E-5 32-33 1.175987395767092E-5 34-35 0.0017417834906439363 36-37 0.0362517990831014 38-39 0.11632512624521575 40-41 0.1532325605609956 42-43 0.0540755942415712 44-45 0.0015559317644889816 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.009227933219456324 64-65 0.07473298641378522 66-67 0.18352059716752614 68-69 0.20395227791024845 70-71 0.07800722773043799 72-73 0.005405905393776299 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 394.0 20-21 1458.0 22-23 2026.0 24-25 3427.0 26-27 6739.0 28-29 12257.0 30-31 26700.0 32-33 33325.0 34-35 42786.0 36-37 59692.0 38-39 72609.0 40-41 81085.0 42-43 96218.0 44-45 112949.0 46-47 107763.0 48-49 91961.0 50-51 76965.0 52-53 67837.0 54-55 74740.0 56-57 77712.0 58-59 78409.0 60-61 76749.0 62-63 73286.0 64-65 74741.0 66-67 83208.0 68-69 82291.0 70-71 81650.0 72-73 78461.0 74-75 78755.0 76-77 74510.0 78-79 80035.0 80-81 83118.0 82-83 87051.0 84-85 90397.0 86-87 91309.0 88-89 98988.0 90-91 99182.0 92-93 98421.0 94-95 107808.0 96-97 265012.0 98-99 491738.0 100-101 5140624.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.28239873694625 #Duplication Level Percentage of deduplicated Percentage of total 1 86.99164059707083 68.9690593659809 2 8.164871578376932 12.946612082256792 3 2.348732609406454 5.58639465796292 4 1.0092424920539724 3.2006066270916933 5 0.5350164628153777 2.1208694267879675 6 0.3006255043791706 1.430058666521099 7 0.1812713297427849 1.0060138090970754 8 0.12522334709045932 0.794240586816065 9 0.08516403815716479 0.6076808308102359 >10 0.2545512650265897 3.036829195524069 >50 0.002756252078376196 0.14424429655281243 >100 8.171618905279897E-4 0.11735666608252612 >500 8.736191131119813E-5 0.04003378851586452 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.1676260271314254E-5 2 0.0 0.0 0.0 0.0 1.1676260271314254E-5 3 0.0 0.0 0.0 0.0 1.1676260271314254E-5 4 0.0 0.0 0.0 0.0 1.1676260271314254E-5 5 0.0 0.0 0.0 0.0 1.1676260271314254E-5 6 0.0 0.0 0.0 0.0 1.1676260271314254E-5 7 0.0 0.0 0.0 0.0 1.1676260271314254E-5 8 0.0 0.0 0.0 0.0 1.1676260271314254E-5 9 0.0 0.0 0.0 2.335252054262851E-5 1.1676260271314254E-5 10-11 0.0 0.0 0.0 7.589569176354265E-5 1.1676260271314254E-5 12-13 0.0 0.0 0.0 1.4011512325577105E-4 2.9190650678285636E-5 14-15 0.0 0.0 0.0 3.969928492246846E-4 4.086691094959989E-5 16-17 0.0 0.0 0.0 8.406907395346263E-4 4.670504108525702E-5 18-19 0.0 0.0 0.0 0.0016288383078483385 4.670504108525702E-5 20-21 0.0 0.0 0.0 0.0038706802799406753 5.2543171220914144E-5 22-23 0.0 0.0 0.0 0.007828932511916208 5.838130135657127E-5 24-25 0.0 0.0 0.0 0.013883073462592647 5.838130135657127E-5 26-27 0.0 0.0 0.0 0.01906149489292052 5.838130135657127E-5 28-29 0.0 0.0 0.0 0.031012147280610657 5.838130135657127E-5 30-31 0.0 0.0 0.0 0.03396040299911751 5.838130135657127E-5 32-33 0.0 0.0 0.0 0.0396817705320615 7.005756162788553E-5 34-35 0.0 0.0 0.0 0.04638394392779588 7.005756162788553E-5 36-37 0.0 0.0 0.0 0.05622119320637814 7.005756162788553E-5 38-39 0.0 0.0 0.0 0.08134266718011075 7.005756162788553E-5 40-41 0.0 0.0 0.0 0.10832066653698233 7.005756162788553E-5 42-43 0.0 0.0 0.0 0.12620869727263578 7.005756162788553E-5 44-45 0.0 0.0 0.0 0.1476638255211757 7.589569176354265E-5 46-47 0.0 0.0 0.0 0.16944588905731245 8.173382189919978E-5 48-49 0.0 0.0 0.0 0.18940645599112418 8.173382189919978E-5 50-51 0.0 0.0 0.0 0.20940205170574983 1.0508634244182829E-4 52-53 0.0 0.0 0.0 0.2531588370725 1.0508634244182829E-4 54-55 0.0 0.0 0.0 0.3008797128013614 1.0508634244182829E-4 56-57 0.0 0.0 0.0 0.3479467179550291 1.0508634244182829E-4 58-59 0.0 0.0 0.0 0.3848904054534674 1.0508634244182829E-4 60-61 0.0 0.0 0.0 0.40042566974445104 1.1676260271314254E-4 62-63 0.0 0.0 0.0 0.4200184344797163 1.284388629844568E-4 64-65 0.0 0.0 0.0 0.4270884100739971 1.4011512325577105E-4 66-67 0.0 0.0 0.0 0.4327338819151776 1.4011512325577105E-4 68-69 0.0 0.0 0.0 0.43857785018097034 1.4011512325577105E-4 70-71 0.0 0.0 0.0 0.44335927876207354 1.4595325339142816E-4 72-73 0.0 0.0 0.0 0.44766781880218853 1.6930577393405667E-4 74-75 0.0 0.0 0.0 0.45124075444521067 1.8682016434102807E-4 76-77 0.0 0.0 0.0 0.45434663967738026 1.8682016434102807E-4 78-79 0.0 0.0 0.0 0.4564250140056742 1.8682016434102807E-4 80-81 0.0 0.0 0.0 0.4570555320603252 1.8682016434102807E-4 82-83 0.0 0.0 0.0 0.45762766881361955 2.3352520542628508E-4 84-85 0.0 0.0 0.0 0.45801298540257296 2.3352520542628508E-4 86-87 0.0 0.0 0.0 0.4581706149162357 2.568777259689136E-4 88 0.0 0.0 0.0 0.45818812930664266 2.802302465115421E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 27930 0.0 31.863054 1 GTATCAA 43395 0.0 28.115967 1 CAACGCA 49525 0.0 23.96757 5 AACGCAG 49725 0.0 23.940527 6 ATCAACG 49865 0.0 23.779259 3 TCAACGC 50345 0.0 23.610065 4 TATCAAC 52110 0.0 23.080324 2 CGCAGAG 53865 0.0 22.03942 8 ACGCAGA 54675 0.0 21.697773 7 GAGTACT 35910 0.0 19.927649 12-13 GCAGAGT 59575 0.0 19.822853 9 GTACATG 31940 0.0 19.494833 1 TACATGG 32090 0.0 18.913778 2 AGAGTAC 50820 0.0 18.6782 10-11 ACATGGG 31575 0.0 18.396774 3 GTACTTT 39260 0.0 18.259027 14-15 CAGAGTA 56860 0.0 18.000364 10-11 AGTACTT 38255 0.0 17.629917 12-13 GTGCGCT 970 0.0 17.063358 9 CATGGGG 19585 0.0 16.667534 4 >>END_MODULE