##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139127_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 17534262 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.72801883535218 33.0 33.0 33.0 33.0 33.0 2 32.773289403340726 33.0 33.0 33.0 33.0 33.0 3 33.45287511958017 33.0 33.0 33.0 33.0 37.0 4 36.56178412299303 37.0 37.0 37.0 37.0 37.0 5 36.584052297153995 37.0 37.0 37.0 37.0 37.0 6 36.54823710287892 37.0 37.0 37.0 37.0 37.0 7 36.48597597093051 37.0 37.0 37.0 37.0 37.0 8 36.508162761569324 37.0 37.0 37.0 37.0 37.0 9 36.56600722630927 37.0 37.0 37.0 37.0 37.0 10-11 36.56297236804149 37.0 37.0 37.0 37.0 37.0 12-13 36.7982454579497 37.0 37.0 37.0 37.0 38.5 14-15 38.58297166997961 40.0 37.0 40.0 37.0 40.0 16-17 38.519310108403765 40.0 37.0 40.0 37.0 40.0 18-19 38.565877480329654 40.0 37.0 40.0 37.0 40.0 20-21 38.58331195024333 40.0 37.0 40.0 37.0 40.0 22-23 38.57528484570904 40.0 37.0 40.0 37.0 40.0 24-25 38.57772919276172 40.0 37.0 40.0 37.0 40.0 26-27 38.488280021575825 40.0 37.0 40.0 37.0 40.0 28-29 38.37539881693803 40.0 37.0 40.0 37.0 40.0 30-31 38.21671603424032 40.0 37.0 40.0 37.0 40.0 32-33 38.12007747847469 40.0 37.0 40.0 37.0 40.0 34-35 38.099462493791826 40.0 37.0 40.0 37.0 40.0 36-37 38.07317712088392 40.0 37.0 40.0 37.0 40.0 38-39 38.04720269160654 40.0 37.0 40.0 37.0 40.0 40-41 38.026683483555175 40.0 37.0 40.0 35.0 40.0 42-43 37.9791290406736 40.0 37.0 40.0 33.0 40.0 44-45 37.87592147969803 40.0 37.0 40.0 33.0 40.0 46-47 37.791827073645166 40.0 37.0 40.0 33.0 40.0 48-49 37.74307722893605 40.0 37.0 40.0 33.0 40.0 50-51 37.71171013084411 40.0 37.0 40.0 33.0 40.0 52-53 37.654082551639405 40.0 37.0 40.0 33.0 40.0 54-55 37.562722798209506 40.0 37.0 40.0 33.0 40.0 56-57 37.39501291569117 40.0 37.0 40.0 33.0 40.0 58-59 37.19695826998502 37.0 37.0 40.0 33.0 40.0 60-61 37.05173507411224 37.0 37.0 40.0 33.0 40.0 62-63 36.92359639546896 37.0 37.0 40.0 33.0 40.0 64-65 36.76374441528697 37.0 37.0 40.0 33.0 40.0 66-67 36.57565696023374 37.0 37.0 40.0 33.0 40.0 68-69 36.38093937886493 37.0 37.0 40.0 33.0 40.0 70-71 36.16388861189579 37.0 37.0 38.5 33.0 40.0 72-73 35.85895388306735 37.0 37.0 37.0 33.0 40.0 74-75 35.25387831760922 37.0 33.0 37.0 30.0 40.0 76-77 33.662160614936724 35.0 33.0 37.0 27.0 37.0 78-79 35.106268695035936 37.0 33.0 37.0 33.0 37.0 80-81 35.27494495428902 37.0 33.0 37.0 33.0 37.0 82-83 35.13665880436832 37.0 33.0 37.0 33.0 37.0 84-85 34.97583333684007 37.0 33.0 37.0 33.0 37.0 86-87 34.86865765686534 37.0 33.0 37.0 33.0 37.0 88-89 34.7781239447657 37.0 33.0 37.0 33.0 37.0 90-91 34.69833225364303 37.0 33.0 37.0 33.0 37.0 92-93 34.68352816849848 37.0 33.0 37.0 33.0 37.0 94-95 34.660513929397425 37.0 33.0 37.0 33.0 37.0 96-97 34.66371114762117 37.0 33.0 37.0 33.0 37.0 98-99 34.6754582514032 37.0 33.0 37.0 33.0 37.0 100 34.60986210035955 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 0.0 12 0.0 13 0.0 14 0.0 15 1.0 16 1.0 17 6.0 18 11.0 19 42.0 20 134.0 21 542.0 22 2024.0 23 5645.0 24 13353.0 25 26856.0 26 47647.0 27 76832.0 28 115469.0 29 165158.0 30 227029.0 31 309291.0 32 416433.0 33 566835.0 34 792603.0 35 1164150.0 36 2072997.0 37 5056784.0 38 6203268.0 39 271148.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.96103053226145 0.022401883400706275 26.373809187053443 28.6427583972844 2 14.922183548617246 23.810049041274173 39.93630736714115 21.331460042967436 3 16.0858666307142 26.247355035529868 33.63507970851582 24.031698625240118 4 12.637999820009533 23.324705653422996 38.43406697128171 25.603227555285763 5 16.59444900472281 37.04714444481007 32.53555995316826 13.822846597298854 6 26.271530561137958 38.30300927407153 20.903292080385246 14.522168084405262 7 24.730504737582308 34.02712746360553 23.42630940798186 17.816058390830296 8 22.96720688713371 32.608554189994095 23.40699730658737 21.017241616284828 9 23.704510506043576 21.158628993407813 24.29139647390497 30.845464026643636 10-11 24.39133077714526 26.33375121545639 28.996575606042907 20.27834240135544 12-13 24.567529040142777 24.812402856367843 29.247088799403375 21.372979304086005 14-15 21.958540370846517 26.97809009583637 27.898522333018633 23.164847200298478 16-17 20.128631589969398 29.108983885378237 29.218629218612108 21.543755306040254 18-19 20.03033888823889 27.937714970202766 31.64605193095814 20.3858942106002 20-21 21.13383265735609 27.127277949482377 31.62662661078394 20.11226278237759 22-23 20.962440361873913 26.837861900364235 31.41304416336444 20.78665357439742 24-25 20.418256895696256 27.30111169664485 31.739317336632734 20.54131407102616 26-27 20.411162460205972 27.604937184932147 31.263390374838878 20.720509980023 28-29 20.347487776477767 27.515225179423116 31.398933938203083 20.73835310589604 30-31 20.700393493320174 27.47953889120584 31.264514127203075 20.55555348827091 32-33 20.419839423960763 27.88149878246429 31.05094623914482 20.64771555443013 34-35 20.474594942864897 27.802205364367843 31.077578141579526 20.645621551187734 36-37 20.696302171853223 27.81806850990617 30.910160608512133 20.575468709728472 38-39 20.448601949972936 28.117648597867024 30.816552706764966 20.61719674539508 40-41 20.797801213577245 27.859928919758364 30.61301996673692 20.729249899927467 42-43 20.86343818877919 27.839196154376754 30.327241289008978 20.970124367835076 44-45 20.82933343659756 28.546397624542735 29.67238302286392 20.951885915995785 46-47 21.099402670342144 28.28445652692238 29.175917929534663 21.440222873200813 48-49 21.145202188221816 28.462280081561914 29.02187756487385 21.37064016534242 50-51 21.023883101151007 28.676853239922863 28.677330705900246 21.621932953025887 52-53 21.20068963601055 28.48728565536827 28.594351060897438 21.717673647723736 54-55 21.12801798518114 28.635358027902473 28.56427322960393 21.672350757312458 56-57 21.16876659515137 28.842075722906163 28.400125454573498 21.589032227368964 58-59 21.33875118674856 28.69808102067795 28.526885859085997 21.43628193348749 60-61 21.280665945649883 28.62781627123068 28.553936120480405 21.537581662639028 62-63 21.307369109958714 28.71096424733206 28.37745982972182 21.60420681298741 64-65 21.216437722458796 28.514402605899058 28.43999618056375 21.8291634910784 66-67 21.366645086188228 28.633085924306766 28.24084022186532 21.75942876763968 68-69 21.352995888724994 28.62689589436169 28.367611188488272 21.652497028425042 70-71 21.445026784569965 28.11077924784877 28.403571029297893 22.04062293828337 72-73 21.38765279212273 28.431744033808236 28.445434963167614 21.735168210901417 74-75 21.327058051973495 28.492214808449308 28.47134075995406 21.709386379623133 76-77 21.52942560993776 28.253368343631557 28.154451273693148 22.062754772737534 78-79 21.39268716865626 28.261088035118142 28.386017153116622 21.96020764310898 80-81 21.341958387984413 28.390111895957844 28.407835235389005 21.86009448066874 82-83 21.768802741331946 27.840662546080768 28.540830597199374 21.84970411538791 84-85 21.797354469843707 27.97953608314075 28.433122618530053 21.78998682848549 86-87 21.56245005768951 28.32146650129259 28.23909827448189 21.876985166536013 88-89 21.809903405407933 27.85355673222183 28.28555959397292 22.050980268397318 90-91 21.929164102748288 27.75636875681594 28.344480334050857 21.96998680638491 92-93 21.771702465818837 27.890332398252593 28.402005299836965 21.935959836091605 94-95 21.76169654011827 27.623565727442383 28.464449595514147 22.150288136925194 96-97 21.72129298014199 28.060294067518647 28.56417734903897 21.65423560330039 98-99 22.924511902346755 30.050938368627516 27.905409526905373 19.11914020212036 100 22.295020752230812 29.838057109472654 22.344329234223874 25.52259290407266 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3052.0 1 3330.0 2 7476.0 3 12076.5 4 17857.0 5 33636.0 6 46166.5 7 51200.0 8 51567.0 9 46679.5 10 40809.5 11 35047.5 12 37387.0 13 49650.0 14 81287.5 15 132804.0 16 181050.0 17 211116.5 18 217133.0 19 202602.0 20 178952.0 21 152824.0 22 132258.0 23 124724.5 24 129754.0 25 146920.0 26 175541.0 27 208124.5 28 240658.0 29 283934.0 30 330215.0 31 372244.5 32 422631.0 33 473989.5 34 523112.5 35 570357.0 36 624571.5 37 687028.0 38 717925.0 39 720661.5 40 728251.5 41 731568.5 42 736897.5 43 757302.0 44 779108.0 45 801631.5 46 815560.0 47 818876.0 48 810403.5 49 778009.0 50 733458.5 51 685562.0 52 629012.0 53 574813.0 54 518856.5 55 449139.0 56 380500.0 57 314772.5 58 257212.0 59 211400.0 60 166930.0 61 126397.5 62 94142.0 63 69272.0 64 50009.5 65 35499.0 66 26341.5 67 20390.5 68 15672.0 69 11981.5 70 9157.5 71 6399.5 72 4357.0 73 3190.5 74 2534.0 75 1875.0 76 1257.0 77 862.5 78 582.0 79 367.5 80 226.0 81 151.5 82 108.5 83 74.0 84 54.0 85 39.5 86 27.0 87 19.5 88 13.0 89 9.0 90 5.5 91 2.5 92 1.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.2546863962680608E-4 2 2.9656223911790527E-4 3 0.0 4 0.0 5 5.70311998303664E-6 6 0.0 7 1.140623996607328E-5 8 5.70311998303664E-6 9 1.1976551964376944E-4 10-11 0.0012005067564292127 12-13 0.005395151503952661 14-15 0.0 16-17 0.0 18-19 2.85155999151832E-6 20-21 5.70336604964706E-6 22-23 2.8520147716112277E-6 24-25 2.5674346700558326E-5 26-27 0.0 28-29 2.856680564608059E-6 30-31 1.4311968569772062E-5 32-33 2.383996387355065E-4 34-35 0.0052020267534782895 36-37 0.04647112709731305 38-39 0.12474086046380892 40-41 0.14097525759943638 42-43 0.04649549725769013 44-45 0.0012645058071746906 46-47 6.156990007666992E-6 48-49 6.24603006233007E-6 50-51 3.1620262403277178E-6 52-53 0.0 54-55 0.0 56-57 3.2677268545027952E-6 58-59 5.948403744202909E-5 60-61 8.992570966344684E-4 62-63 0.016860936601694798 64-65 0.08961269548988314 66-67 0.18534536232818444 68-69 0.1842784311157095 70-71 0.06809543459063891 72-73 0.0046691094707661685 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 413.0 20-21 1644.0 22-23 3553.0 24-25 7284.0 26-27 13215.0 28-29 27187.0 30-31 56085.0 32-33 72588.0 34-35 100461.0 36-37 141542.0 38-39 170508.0 40-41 177859.0 42-43 212654.0 44-45 246310.0 46-47 239125.0 48-49 205909.0 50-51 177237.0 52-53 167675.0 54-55 169243.0 56-57 170869.0 58-59 173449.0 60-61 170660.0 62-63 168424.0 64-65 177464.0 66-67 191727.0 68-69 182160.0 70-71 185460.0 72-73 180671.0 74-75 177213.0 76-77 171630.0 78-79 182026.0 80-81 187905.0 82-83 178840.0 84-85 195420.0 86-87 205631.0 88-89 221604.0 90-91 218686.0 92-93 218071.0 94-95 263019.0 96-97 768489.0 98-99 2832794.0 100-101 7921558.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 75.04332522993326 #Duplication Level Percentage of deduplicated Percentage of total 1 86.81263669576683 65.1470892962847 2 7.582661405082352 11.380562518601156 3 2.3596612011443057 5.312304688497814 4 1.0981974095802485 3.296495414952033 5 0.635797004421066 2.385616069149369 6 0.3820001379643078 1.719993635468096 7 0.2666041615104875 1.4004803959919618 8 0.18539535735795434 1.1130147278666136 9 0.12958199347233856 0.8751837312079014 >10 0.5328571331422907 6.328067867958334 >50 0.011628030479388757 0.5749835803713506 >100 0.002746146885091832 0.3243046009265859 >500 1.9090251008878754E-4 0.10199969023978125 >1k 4.242068319936362E-5 0.0399037824842567 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 0.0 14-15 0.0 0.0 0.0 0.0 0.0 16-17 0.0 0.0 0.0 0.0 0.0 18-19 0.0 0.0 0.0 1.4257799957591599E-5 2.85155999151832E-6 20-21 0.0 0.0 0.0 4.562495986429312E-5 5.70311998303664E-6 22-23 0.0 0.0 0.0 7.1288999787958E-5 5.70311998303664E-6 24-25 0.0 0.0 0.0 1.0265615969465953E-4 5.70311998303664E-6 26-27 0.0 0.0 0.0 1.996091994062824E-4 5.70311998303664E-6 28-29 0.0 0.0 0.0 8.55467997455496E-4 5.70311998303664E-6 30-31 0.0 0.0 0.0 0.0026148805122222993 5.70311998303664E-6 32-33 0.0 0.0 0.0 0.006373236581043445 5.70311998303664E-6 34-35 0.0 0.0 0.0 0.011072607447065636 5.70311998303664E-6 36-37 0.0 0.0 0.0 0.01801330446642123 5.70311998303664E-6 38-39 0.0 0.0 0.0 0.028940482353919432 5.70311998303664E-6 40-41 0.0 0.0 0.0 0.039670902602002865 5.70311998303664E-6 42-43 0.0 0.0 0.0 0.04986237801168934 5.70311998303664E-6 44-45 0.0 0.0 0.0 0.06076674341925539 5.70311998303664E-6 46-47 0.0 0.0 0.0 0.0713831012676781 5.70311998303664E-6 48-49 0.0 0.0 0.0 0.08142344399781411 5.70311998303664E-6 50-51 0.0 0.0 0.0 0.09100753712930718 5.70311998303664E-6 52-53 0.0 0.0 0.0 0.09998709954259838 5.70311998303664E-6 54-55 0.0 0.0 0.0 0.10713025732135176 5.70311998303664E-6 56-57 0.0 0.0 0.0 0.11297880686395584 5.70311998303664E-6 58-59 0.0 0.0 0.0 0.11889009072637331 5.70311998303664E-6 60-61 0.0 5.70311998303664E-6 0.0 0.12465024190924032 5.70311998303664E-6 62-63 0.0 5.70311998303664E-6 0.0 0.13051019769181046 5.70311998303664E-6 64-65 0.0 5.70311998303664E-6 0.0 0.1365070283539735 5.70311998303664E-6 66-67 0.0 5.70311998303664E-6 0.0 0.14261792141579727 5.70311998303664E-6 68-69 0.0 5.70311998303664E-6 0.0 0.1487544785175447 5.70311998303664E-6 70-71 0.0 5.70311998303664E-6 0.0 0.15421236434131075 5.70311998303664E-6 72-73 0.0 5.70311998303664E-6 0.0 0.15870071976796057 5.70311998303664E-6 74-75 0.0 5.70311998303664E-6 0.0 0.16241059931692592 5.70311998303664E-6 76-77 0.0 5.70311998303664E-6 0.0 0.1656471199072992 5.70311998303664E-6 78-79 0.0 5.70311998303664E-6 0.0 0.16770594622117543 5.70311998303664E-6 80-81 0.0 5.70311998303664E-6 0.0 0.16849297677883449 5.70311998303664E-6 82-83 0.0 5.70311998303664E-6 0.0 0.16906328877713817 5.70311998303664E-6 84-85 0.0 5.70311998303664E-6 0.0 0.16931422605639176 5.70311998303664E-6 86-87 0.0 5.70311998303664E-6 0.0 0.169425436896061 5.70311998303664E-6 88 0.0 5.70311998303664E-6 0.0 0.16943399157603553 5.70311998303664E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 42480 0.0 44.816494 1 GTATCAA 75805 0.0 34.113148 1 ATCAACG 89715 0.0 28.278893 3 ACGCAGA 93495 0.0 27.170193 7 AACGCAG 93945 0.0 27.048258 6 TCAACGC 94065 0.0 27.027615 4 TATCAAC 94710 0.0 27.00697 2 CAACGCA 94300 0.0 26.92229 5 CGCAGAG 106105 0.0 23.971891 8 TGCGAGT 3260 0.0 22.714283 94 GCAGAGT 117720 0.0 21.478575 9 ACATGGG 71540 0.0 20.784676 3 GTACATG 75395 0.0 20.640806 1 GGTTCAC 7390 0.0 20.570314 6 GTGGTAT 20500 0.0 20.55352 1 TACATGG 75210 0.0 20.29606 2 GAGTACT 77355 0.0 19.771353 12-13 TGATCGC 2635 0.0 19.333628 9 ACGGTAC 2030 0.0 19.06979 3 CAGAGTA 115910 0.0 19.022127 10-11 >>END_MODULE