##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139126_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9545194 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.69780708490576 33.0 33.0 33.0 33.0 33.0 2 32.70948447983351 33.0 33.0 33.0 33.0 33.0 3 32.68423449539108 33.0 33.0 33.0 33.0 33.0 4 36.6278789095329 37.0 37.0 37.0 37.0 37.0 5 36.65216390573099 37.0 37.0 37.0 37.0 37.0 6 36.624027756795726 37.0 37.0 37.0 37.0 37.0 7 36.53060587348984 37.0 37.0 37.0 37.0 37.0 8 36.56430503141162 37.0 37.0 37.0 37.0 37.0 9 36.61791483756119 37.0 37.0 37.0 37.0 37.0 10-11 36.59824561973282 37.0 37.0 37.0 37.0 37.0 12-13 36.58427382408362 37.0 37.0 37.0 37.0 37.0 14-15 38.741782880473664 40.0 37.0 40.0 37.0 40.0 16-17 38.68422255220795 40.0 37.0 40.0 37.0 40.0 18-19 38.702231877110094 40.0 37.0 40.0 37.0 40.0 20-21 38.70719829305231 40.0 37.0 40.0 37.0 40.0 22-23 38.689228485363884 40.0 37.0 40.0 37.0 40.0 24-25 38.70909943601815 40.0 37.0 40.0 37.0 40.0 26-27 38.63707958713669 40.0 37.0 40.0 37.0 40.0 28-29 38.532532342486896 40.0 37.0 40.0 37.0 40.0 30-31 38.40500551439706 40.0 37.0 40.0 37.0 40.0 32-33 38.31226804483173 40.0 37.0 40.0 37.0 40.0 34-35 38.278517517502316 40.0 37.0 40.0 37.0 40.0 36-37 38.253760939681946 40.0 37.0 40.0 37.0 40.0 38-39 38.211397720771316 40.0 37.0 40.0 37.0 40.0 40-41 38.17161305752011 40.0 37.0 40.0 37.0 40.0 42-43 38.1199647299398 40.0 37.0 40.0 37.0 40.0 44-45 38.02123052841334 40.0 37.0 40.0 33.0 40.0 46-47 37.935273130377816 40.0 37.0 40.0 33.0 40.0 48-49 37.86922448065503 40.0 37.0 40.0 33.0 40.0 50-51 37.819450875578795 40.0 37.0 40.0 33.0 40.0 52-53 37.74417061488734 40.0 37.0 40.0 33.0 40.0 54-55 37.64151562508239 40.0 37.0 40.0 33.0 40.0 56-57 37.47598248370962 40.0 37.0 40.0 33.0 40.0 58-59 37.26592356854957 38.5 37.0 40.0 33.0 40.0 60-61 37.096240307784264 37.0 37.0 40.0 33.0 40.0 62-63 36.94821755408525 37.0 37.0 40.0 33.0 40.0 64-65 36.77064682361306 37.0 37.0 40.0 33.0 40.0 66-67 36.560536346622456 37.0 37.0 40.0 33.0 40.0 68-69 36.356219832704504 37.0 37.0 40.0 33.0 40.0 70-71 36.1372422520443 37.0 37.0 38.5 33.0 40.0 72-73 35.84640114180084 37.0 37.0 37.0 33.0 40.0 74-75 35.50934975239019 37.0 33.0 37.0 33.0 40.0 76-77 33.3543686930848 35.0 33.0 37.0 27.0 37.0 78-79 35.03087434135989 37.0 33.0 37.0 33.0 37.0 80-81 35.249648801514724 37.0 33.0 37.0 33.0 37.0 82-83 35.12183330021753 37.0 33.0 37.0 33.0 37.0 84-85 34.95375016207204 37.0 33.0 37.0 33.0 37.0 86-87 34.83913464842172 37.0 33.0 37.0 33.0 37.0 88-89 34.740697963713565 37.0 33.0 37.0 33.0 37.0 90-91 34.65713804349184 37.0 33.0 37.0 33.0 37.0 92-93 34.63585869778866 37.0 33.0 37.0 33.0 37.0 94-95 34.59777379167919 37.0 33.0 37.0 33.0 37.0 96-97 34.600053441383146 37.0 33.0 37.0 33.0 37.0 98-99 34.61304301132209 37.0 33.0 37.0 33.0 37.0 100 34.56861929636654 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 9.0 20 32.0 21 248.0 22 1032.0 23 2899.0 24 7189.0 25 14752.0 26 26328.0 27 42774.0 28 63966.0 29 90826.0 30 123987.0 31 166132.0 32 223061.0 33 302119.0 34 422548.0 35 633984.0 36 1159106.0 37 2912950.0 38 3267972.0 39 83278.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.79042353670339 20.263674054188947 14.690869562211098 23.255032846896565 2 14.821200445293833 20.465894854752538 42.388381627627325 22.324523072326304 3 18.919112592158942 25.40886020755576 29.87743360690207 25.794593593383226 4 12.708657362019043 17.477350381773277 38.47975221876056 31.33424003744712 5 13.645369596469175 37.33533336252778 35.306783707067666 13.71251333393538 6 30.618906226526143 37.285926299664524 18.40019176142465 13.694975712384682 7 27.144759970305476 32.30330363112578 22.575329532328 17.97660686624075 8 24.258124036033212 37.383137524496625 20.595223103899198 17.763515335570972 9 25.390107314738703 17.27956498317373 21.271322510574432 36.05900519151313 10-11 24.55324113894385 26.840072606172278 28.356406375815936 20.250279879067936 12-13 25.193302955402192 24.19675398658615 28.928915735422933 21.681027322588726 14-15 22.16354638784712 25.678786622880583 26.710939557645453 25.446727431626847 16-17 21.640194007581197 28.79420784952092 27.46108146151875 22.10451668137913 18-19 21.60886934304321 27.73033214411357 29.53336516785306 21.12743334499016 20-21 22.281574201536404 26.904091230322496 29.660913025073338 21.153421543067765 22-23 22.044175850104995 26.76185492846212 29.5183270967189 21.67564212471399 24-25 21.78157574821404 26.963465662461562 29.606095695042967 21.648862894281436 26-27 21.763802850557113 27.10544080002235 29.542241685525667 21.588514663894873 28-29 21.64075476407658 27.223829598902782 29.551393768191144 21.5840218688295 30-31 21.95257114939022 27.05548645544899 29.403301000641502 21.588641394519286 32-33 21.72181744213794 27.23690199743291 29.37609261714065 21.665187943288505 34-35 21.829030813246487 27.28915696274437 29.347961504951947 21.53385071905719 36-37 21.865025611829346 27.22457265839417 29.2578287052049 21.65257302457158 38-39 21.745150953363037 27.36117464957884 29.301624888060623 21.592049508997498 40-41 22.024650494538612 27.251938570844757 29.087524043337016 21.635886891279615 42-43 21.92162954348979 27.38276913948004 28.823766435169002 21.871834881861165 44-45 21.99180960427747 27.485063137376763 28.65067665838874 21.872450599957027 46-47 22.098108172916334 27.553033865315236 28.297104968933205 22.051752992835226 48-49 22.03474936385282 27.69487997251619 28.223717202345643 22.04665346128534 50-51 22.039453566432034 27.79400210109936 28.123554896733605 22.042989435735006 52-53 22.266310315125338 27.703128365772784 27.93568443861029 22.094876880491583 54-55 22.222271482213994 27.612644602021685 27.97106030216626 22.194023613598056 56-57 22.186139126614428 27.766709321047344 27.909181479191442 22.137970073146782 58-59 22.19330520411841 27.778517878101 27.907674747033496 22.120502170747095 60-61 22.233465909674354 27.7191735029378 27.97199272758962 22.07536785979823 62-63 22.193085203123562 27.82992088862166 27.900337108304196 22.076656799950577 64-65 22.18301062678294 27.81278826457369 27.836523405117624 22.16767770352574 66-67 22.260127255668156 27.81235649480111 27.687677196185163 22.239839053345573 68-69 22.20865283262419 27.787848437534603 27.760526382477725 22.242972347363487 70-71 22.221796467894865 27.618029583823482 27.775144420240277 22.38502952804137 72-73 22.296937601210878 27.617305146666965 27.70828758524037 22.377469666881787 74-75 22.13315989774229 27.804126218201908 27.690373194507185 22.372340689548622 76-77 22.353022935692042 27.714846540323673 27.55250683889302 22.379623685091264 78-79 22.325953638083075 27.687625467805223 27.561015232363506 22.425405661748197 80-81 22.291350379235134 27.712259795309063 27.571564263608987 22.424825561846816 82-83 22.3722673571511 27.681531593512602 27.604168011765555 22.342033037570737 84-85 22.474713189563246 27.69872440443702 27.51367583676104 22.312886569238692 86-87 22.297171749470305 27.719690670916382 27.600320392103566 22.382817187509747 88-89 22.35809659796712 27.71676992899484 27.54762497469222 22.377508498345815 90-91 22.395976722670447 27.73891771579876 27.524752834151933 22.34035272737886 92-93 22.466034335578108 27.705434885706154 27.50819817256315 22.320332606152583 94-95 22.356581571628915 27.759927770423126 27.52813931117532 22.355351346772643 96-97 22.429040038906315 27.83875421457877 27.623196258204764 22.109009488310154 98-99 23.556989352221557 29.747639767778672 27.788902427945178 18.906468452054597 100 22.54356342984838 30.634526812963404 21.63187760132182 25.190032155866398 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2848.0 1 2418.0 2 2932.5 3 4150.5 4 5464.0 5 8771.5 6 11864.0 7 14354.5 8 16335.5 9 16627.5 10 15395.5 11 13607.5 12 14171.5 13 18287.5 14 28674.0 15 43626.0 16 56388.0 17 64084.0 18 65959.0 19 62397.5 20 55622.5 21 47575.0 22 40809.0 23 38775.5 24 42131.5 25 50644.5 26 63322.0 27 78041.0 28 94051.5 29 113285.5 30 133959.0 31 155107.5 32 178808.5 33 202410.5 34 225739.5 35 247532.5 36 271971.0 37 295878.5 38 313182.5 39 327222.0 40 342791.0 41 357307.5 42 365831.0 43 375861.0 44 385815.0 45 393908.5 46 398189.5 47 399003.0 48 399438.5 49 391872.5 50 378363.5 51 363501.5 52 343717.5 53 321185.5 54 298614.0 55 272200.5 56 243462.0 57 214992.0 58 187934.0 59 161979.5 60 133497.0 61 106716.0 62 83797.5 63 63455.5 64 46597.5 65 33982.5 66 25262.5 67 19034.0 68 14329.5 69 10251.5 70 7138.5 71 4974.5 72 3384.5 73 2267.0 74 1544.5 75 1016.0 76 660.0 77 450.5 78 316.0 79 243.5 80 173.0 81 103.0 82 72.0 83 52.5 84 38.0 85 29.0 86 23.0 87 16.5 88 10.5 89 6.0 90 3.0 91 2.5 92 2.0 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 3.771531516279292E-4 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.006867330302558545 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 3.667836531861448E-5 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0018060748459531365 36-37 0.03685228597901662 38-39 0.11631275704140555 40-41 0.15067861349996547 42-43 0.05370887616266936 44-45 0.001476650622536642 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.008665946457508403 64-65 0.06962922968385096 66-67 0.16919306873129958 68-69 0.18726163962032677 70-71 0.07205117188926198 72-73 0.005025410999392903 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 147.0 20-21 576.0 22-23 1374.0 24-25 2802.0 26-27 3887.0 28-29 6373.0 30-31 13547.0 32-33 15847.0 34-35 21023.0 36-37 22759.0 38-39 24944.0 40-41 33849.0 42-43 40675.0 44-45 49319.0 46-47 51253.0 48-49 42191.0 50-51 35954.0 52-53 32586.0 54-55 43787.0 56-57 40889.0 58-59 42681.0 60-61 46500.0 62-63 49716.0 64-65 58814.0 66-67 69616.0 68-69 67716.0 70-71 64912.0 72-73 62686.0 74-75 65559.0 76-77 59295.0 78-79 64222.0 80-81 67509.0 82-83 70632.0 84-85 76682.0 86-87 82652.0 88-89 89121.0 90-91 91802.0 92-93 99679.0 94-95 121675.0 96-97 334819.0 98-99 630476.0 100-101 6744648.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.70614633475701 #Duplication Level Percentage of deduplicated Percentage of total 1 87.74691776633631 71.69462503440164 2 8.190197176615435 13.38378898046109 3 2.1594417409916917 5.2931898867254885 4 0.8449182245998893 2.7614004840024657 5 0.41232592803773477 1.6844781306932823 6 0.21174758998990934 1.0380647744248597 7 0.12456726243240486 0.7124537680975506 8 0.0828279151625347 0.5414039805498319 9 0.04873572519001948 0.35838074646956114 >10 0.17373563051268945 2.170834538029181 >50 0.003542120795615421 0.19023119145100906 >100 9.713541507023151E-4 0.13117243786837654 >500 7.15651850859758E-5 0.039976046825628726 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.0952952868218288E-5 2 0.0 4.1905905736436575E-5 0.0 0.0 2.0952952868218288E-5 3 0.0 5.238238217054572E-5 0.0 1.0476476434109144E-5 2.0952952868218288E-5 4 0.0 1.1524124077520059E-4 0.0 1.0476476434109144E-5 3.142942930232743E-5 5 0.0 1.2571771720930973E-4 0.0 1.0476476434109144E-5 3.142942930232743E-5 6 2.0952952868218288E-5 1.2571771720930973E-4 0.0 1.0476476434109144E-5 3.142942930232743E-5 7 2.0952952868218288E-5 1.3619419364341886E-4 0.0 1.0476476434109144E-5 3.142942930232743E-5 8 2.0952952868218288E-5 1.5714714651163716E-4 0.0 1.0476476434109144E-5 5.238238217054572E-5 9 2.0952952868218288E-5 2.619119108527286E-4 0.0 2.0952952868218288E-5 6.285885860465486E-5 10-11 2.0952952868218288E-5 2.619119108527286E-4 0.0 5.7620620387600295E-5 6.809709682170943E-5 12-13 2.0952952868218288E-5 2.619119108527286E-4 0.0 9.952652612403687E-5 8.905004968992773E-5 14-15 2.0952952868218288E-5 3.981061044961475E-4 0.0 1.0476476434109144E-4 1.2571771720930973E-4 16-17 3.142942930232743E-5 4.0858258093025664E-4 0.0 1.0476476434109144E-4 1.5714714651163716E-4 18-19 3.142942930232743E-5 4.295355337984749E-4 0.0 1.2571771720930973E-4 1.885765758139646E-4 20-21 3.142942930232743E-5 4.6096496310080236E-4 0.0 1.6238538472869175E-4 2.2000600511629201E-4 22-23 3.142942930232743E-5 4.766796777519661E-4 0.0 1.7810009937985547E-4 3.0381781658916516E-4 24-25 3.142942930232743E-5 5.238238217054572E-4 0.0 1.885765758139646E-4 3.5620019875971093E-4 26-27 3.142942930232743E-5 5.552532510077847E-4 0.0 2.5667367263567406E-4 3.614384369767655E-4 28-29 3.142942930232743E-5 5.552532510077847E-4 0.0 4.347737720155295E-4 3.6667667519382004E-4 30-31 3.142942930232743E-5 6.443033006977123E-4 0.0 0.0010005034994574231 3.6667667519382004E-4 32-33 3.142942930232743E-5 6.49541538914767E-4 0.0 0.0022576806715505207 4.0858258093025664E-4 34-35 3.666766751938201E-5 7.22876873953531E-4 0.0 0.0036039078933335455 4.6096496310080236E-4 36-37 4.1905905736436575E-5 7.857357325581858E-4 0.0 0.005667773750853047 4.7144143953491147E-4 38-39 4.1905905736436575E-5 8.171651618605132E-4 0.0 0.010654576533489 4.8191791596902063E-4 40-41 4.1905905736436575E-5 8.800240204651682E-4 0.0 0.01571995288938077 4.8191791596902063E-4 42-43 4.1905905736436575E-5 9.219299262016047E-4 0.0 0.01932909902093137 4.8191791596902063E-4 44-45 4.7144143953491144E-5 0.0010371711669768054 0.0 0.023147774681164156 4.976326306201843E-4 46-47 5.238238217054572E-5 0.0011000300255814602 0.0 0.027191694584730284 5.290620599225118E-4 48-49 5.238238217054572E-5 0.0011105065020155693 0.0 0.03220468855845151 5.657297274418938E-4 50-51 5.7620620387600295E-5 0.0012938448396124793 0.0 0.0371757766264363 5.657297274418938E-4 52-53 6.809709682170943E-5 0.001309559554263643 0.0 0.052020943733568956 5.814444420930574E-4 54-55 7.333533503876401E-5 0.0013252742689148066 0.0 0.07239245215969418 6.12873871395385E-4 56-57 7.333533503876401E-5 0.001372418412868298 0.0 0.09576547108419169 6.338268242636032E-4 58-59 7.333533503876401E-5 0.001372418412868298 0.0 0.11076778533783599 6.390650624806578E-4 60-61 8.905004968992773E-5 0.0013986096039535706 0.0 0.1225381066115576 6.390650624806578E-4 62-63 1.1524124077520059E-4 0.0014509919861241164 0.0 0.1334965009616358 6.547797771318215E-4 64-65 1.1524124077520059E-4 0.001665759753023354 0.0 0.13800662406651976 6.704944917829852E-4 66-67 1.2571771720930973E-4 0.001676236229457463 0.0 0.1432029563778379 7.071621593023672E-4 68-69 1.2571771720930973E-4 0.0017338568498450634 0.0 0.14861929469427232 7.385915886046947E-4 70-71 1.2571771720930973E-4 0.0017705245173644454 0.0 0.15266321459783846 7.857357325581858E-4 72-73 1.4667067007752803E-4 0.0017810009937985545 0.0 0.15563853390512544 9.114534497674956E-4 74-75 1.4667067007752803E-4 0.001801953946666773 0.0 0.15811622058179226 9.114534497674956E-4 76-77 1.4667067007752803E-4 0.001875289281705537 0.0 0.16036866301512573 9.114534497674956E-4 78-79 1.4667067007752803E-4 0.0019171951874419734 0.0 0.16189822857450564 9.324064026357138E-4 80-81 1.4667067007752803E-4 0.0019171951874419734 0.0 0.16246395830194754 9.585975937209867E-4 82-83 1.5190890829458258E-4 0.0019276716638760825 0.0 0.16300349683830417 0.0010057417376744778 84-85 1.5714714651163716E-4 0.0019486246167443007 0.0 0.1631973116523352 0.001016218214108587 86-87 1.5714714651163716E-4 0.001980054046046628 0.0 0.1632654087491569 0.001016218214108587 88 1.5714714651163716E-4 0.002032436428217174 0.0 0.16327588522559103 0.001016218214108587 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13735 0.0 51.917625 1 GTATCAA 24665 0.0 38.773846 1 TCAACGC 29985 0.0 31.278172 4 ATCAACG 30260 0.0 30.993917 3 CAACGCA 30670 0.0 30.579588 5 TATCAAC 31470 0.0 30.012058 2 AACGCAG 31390 0.0 29.838947 6 ACGCAGA 35875 0.0 26.072044 7 CGCAGAG 36430 0.0 25.783531 8 GTGGTAT 6605 0.0 24.576159 1 TGGTATC 6375 0.0 24.22074 2 GTACATG 26835 0.0 22.655148 1 GCAGAGT 41995 0.0 22.324902 9 TACATGG 27165 0.0 21.52166 2 ACATGGG 27255 0.0 20.740305 3 GAGTACT 28410 0.0 20.626059 12-13 CAGAGTA 40945 0.0 20.087612 10-11 AGAGTAC 38475 0.0 19.456156 10-11 GTACTTT 30835 0.0 18.874886 14-15 CATGGGG 19945 0.0 18.460762 4 >>END_MODULE