##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139125_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8014878 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.6513784738832 33.0 33.0 33.0 33.0 33.0 2 32.665629470592066 33.0 33.0 33.0 33.0 33.0 3 32.63484110425636 33.0 33.0 33.0 33.0 33.0 4 36.572672098065624 37.0 37.0 37.0 37.0 37.0 5 36.60167366240634 37.0 37.0 37.0 37.0 37.0 6 36.57560464426283 37.0 37.0 37.0 37.0 37.0 7 36.48030899534591 37.0 37.0 37.0 37.0 37.0 8 36.5165106692828 37.0 37.0 37.0 37.0 37.0 9 36.57072958565308 37.0 37.0 37.0 37.0 37.0 10-11 36.55079141566472 37.0 37.0 37.0 37.0 37.0 12-13 36.53659088759679 37.0 37.0 37.0 37.0 37.0 14-15 38.60736626309222 40.0 37.0 40.0 37.0 40.0 16-17 38.541510925057125 40.0 37.0 40.0 37.0 40.0 18-19 38.58174959119777 40.0 37.0 40.0 37.0 40.0 20-21 38.6021495620388 40.0 37.0 40.0 37.0 40.0 22-23 38.58350260267238 40.0 37.0 40.0 37.0 40.0 24-25 38.597894256764235 40.0 37.0 40.0 37.0 40.0 26-27 38.51233126153483 40.0 37.0 40.0 37.0 40.0 28-29 38.396128929426 40.0 37.0 40.0 37.0 40.0 30-31 38.24563226689171 40.0 37.0 40.0 37.0 40.0 32-33 38.13452996868619 40.0 37.0 40.0 37.0 40.0 34-35 38.08887342775787 40.0 37.0 40.0 37.0 40.0 36-37 38.064957479979455 40.0 37.0 40.0 37.0 40.0 38-39 38.01445823372981 40.0 37.0 40.0 33.0 40.0 40-41 37.994336920110214 40.0 37.0 40.0 33.0 40.0 42-43 37.94962112505698 40.0 37.0 40.0 33.0 40.0 44-45 37.842422716602066 40.0 37.0 40.0 33.0 40.0 46-47 37.75355468593095 40.0 37.0 40.0 33.0 40.0 48-49 37.6994549535263 40.0 37.0 40.0 33.0 40.0 50-51 37.63072362674025 40.0 37.0 40.0 33.0 40.0 52-53 37.57710726692201 40.0 37.0 40.0 33.0 40.0 54-55 37.46668256002022 40.0 37.0 40.0 33.0 40.0 56-57 37.27574791080055 38.5 37.0 40.0 33.0 40.0 58-59 37.06384285221687 37.0 37.0 40.0 33.0 40.0 60-61 36.885940597661346 37.0 37.0 40.0 33.0 40.0 62-63 36.75201325661301 37.0 37.0 40.0 33.0 40.0 64-65 36.603985809013764 37.0 37.0 40.0 33.0 40.0 66-67 36.40540702926503 37.0 37.0 40.0 33.0 40.0 68-69 36.219523135415415 37.0 37.0 40.0 33.0 40.0 70-71 36.021957818143235 37.0 37.0 37.0 33.0 40.0 72-73 35.74744317110516 37.0 35.0 37.0 33.0 40.0 74-75 35.41878715286665 37.0 33.0 37.0 33.0 40.0 76-77 33.21970268932654 35.0 33.0 37.0 27.0 37.0 78-79 34.93945167803662 37.0 33.0 37.0 33.0 37.0 80-81 35.1858983776047 37.0 33.0 37.0 33.0 37.0 82-83 35.07233414304582 37.0 33.0 37.0 33.0 37.0 84-85 34.91881174804113 37.0 33.0 37.0 33.0 37.0 86-87 34.81739721199724 37.0 33.0 37.0 33.0 37.0 88-89 34.730534684039824 37.0 33.0 37.0 33.0 37.0 90-91 34.65576793459908 37.0 33.0 37.0 33.0 37.0 92-93 34.64419950772198 37.0 33.0 37.0 33.0 37.0 94-95 34.61411233981396 37.0 33.0 37.0 33.0 37.0 96-97 34.62753021073915 37.0 33.0 37.0 33.0 37.0 98-99 34.647882010238774 37.0 33.0 37.0 33.0 37.0 100 34.61004818822111 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 0.0 17 0.0 18 4.0 19 9.0 20 42.0 21 273.0 22 1005.0 23 2968.0 24 6884.0 25 13673.0 26 24522.0 27 39158.0 28 57779.0 29 81052.0 30 109732.0 31 146806.0 32 195104.0 33 263287.0 34 366301.0 35 542337.0 36 986693.0 37 2445936.0 38 2640810.0 39 90502.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.31749511782839 20.36856215866596 14.81577506626428 23.49816765724136 2 14.335570061160352 20.40101147459966 42.932098522826365 22.33131994141363 3 17.90529037438753 26.784478414328756 30.909257871331025 24.400973339952692 4 11.960982058739017 18.249812193000594 38.4014377263681 31.38776802189229 5 12.827096410836997 37.900357048523645 35.42454862376553 13.847997916873833 6 28.999110030010446 38.06070885429683 18.599412068332427 14.340769047360302 7 25.84331289883639 33.30488623781921 22.53525256404402 18.316548299300376 8 24.397514222923917 36.264931294025935 21.17226238502944 18.165292098020704 9 25.436768968910066 16.5819616967345 21.172511920955003 36.80875741340043 10-11 24.125782076782702 26.724598927145244 28.373750667196678 20.775868328875376 12-13 25.213363753709743 24.2710620242527 28.62752070812847 21.888053513909085 14-15 22.366703523122872 25.593714589292567 26.840695516513165 25.1988863710714 16-17 21.244403221109543 28.888811532751962 27.421502860056012 22.445282386082482 18-19 21.007631058139626 27.188461259173252 30.12687155063371 21.677036132053416 20-21 21.933500545631816 26.219342990920776 30.254934705103036 21.592221758344373 22-23 21.657626620338768 26.5824157476251 30.06364678455456 21.69631084748157 24-25 21.261359674868878 26.933667574371402 30.437419485774893 21.367553264984835 26-27 21.129863157586513 27.001535927025706 30.4575871305036 21.411013784884183 28-29 20.652804077490362 26.709358787824332 30.490962933842685 22.146874200842618 30-31 21.099068689085822 26.535403591953333 30.56336413916852 21.802163579792325 32-33 20.814686524500253 26.99392697932058 30.451906586882 21.739479909297167 34-35 20.982606545838458 27.452485738013245 30.53506228981078 21.029845426337516 36-37 21.30201459686973 27.06123049859942 29.841431390608502 21.795323513922348 38-39 21.343154253306025 26.842495469361253 30.074070738537127 21.74027953879559 40-41 21.435772608493313 26.92746794700267 30.089699394797474 21.54706004970654 42-43 21.73109500635124 26.902315321772154 29.771716885243414 21.594872786633196 44-45 21.505272440689946 27.5071851377807 29.192274043129085 21.795268378400273 46-47 22.048348855452062 27.098300008502097 28.372364550642814 22.480986585403024 48-49 22.053050022814784 27.220506730597716 28.32311961568774 22.40332363089976 50-51 21.690678823118382 27.54893679334135 28.34326907923138 22.417115304308886 52-53 21.842906957993478 27.741775592906613 28.38353616659111 22.031781282508803 54-55 21.87396731050414 27.728914496136873 27.962854660563035 22.43426353279595 56-57 22.340650447839607 28.011202345544064 27.424618608999722 22.223528597616607 58-59 21.720933174975848 28.32692790886272 28.104939116598267 21.84719979956317 60-61 22.16093953615911 28.683923752666256 27.263837937280382 21.891298773894253 62-63 21.84986203978739 28.835876841088755 27.17379173910525 22.140469380018608 64-65 21.880873962764536 28.609525143487975 27.272970584082902 22.236630309664594 66-67 22.12711689433699 28.31488604245268 27.232125218414005 22.325871844796325 68-69 22.147960530936377 27.99160823890481 27.411404538887112 22.449026691271705 70-71 22.128202971174083 27.55617617082875 27.521231671486042 22.79438918651113 72-73 22.272626555549742 27.612588627198658 27.565679637377134 22.549105179874466 74-75 22.286023187430075 27.677918477668978 27.429601100957395 22.606457233943548 76-77 22.23262326969275 27.59684696676073 27.323744745378274 22.84678501816825 78-79 22.31837611505906 27.614762013653323 27.2900656189833 22.77679625230432 80-81 22.299052880232978 27.537124382426626 27.386892494945275 22.776930242395117 82-83 22.47551207597994 27.324600033612988 27.597042587391286 22.602845303015787 84-85 22.77980577672098 27.315287286850893 27.273454735617776 22.631452200810354 86-87 22.30371078922725 27.497277808778914 27.399196324507503 22.799815077486333 88-89 22.59355363089246 27.263568828755076 27.40367196402297 22.739205576329503 90-91 22.652228924773624 27.10713618838485 27.498872710134826 22.741762176706704 92-93 22.69817066232941 27.167511209983992 27.41538154281613 22.71893658487047 94-95 22.39389363103916 27.18785706866106 27.62153318790901 22.796716112390776 96-97 22.5445273873972 27.289373805502244 27.667391140351523 22.49870766674903 98-99 23.66152156479478 29.223531513093782 27.802409299486374 19.31253762262506 100 22.7155895796253 29.99253171480973 21.44032907872521 25.851549626839766 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1720.0 1 1825.5 2 3572.5 3 5529.0 4 8070.0 5 14659.0 6 19942.5 7 22566.0 8 23501.0 9 21945.5 10 19359.0 11 16976.0 12 18389.0 13 25079.0 14 41079.0 15 63762.5 16 82298.0 17 92653.0 18 94175.5 19 87364.5 20 76204.5 21 64091.0 22 54538.0 23 50991.5 24 53767.0 25 62358.5 26 75234.5 27 88956.5 28 100191.0 29 113359.5 30 127107.0 31 139912.5 32 156909.5 33 173421.5 34 190906.0 35 210747.5 36 232726.0 37 254418.0 38 263467.0 39 266473.0 40 276784.5 41 287497.5 42 294558.0 43 306924.0 44 326342.0 45 351486.0 46 375002.5 47 389905.5 48 388113.0 49 376782.5 50 368269.5 51 350819.0 52 327014.0 53 307231.0 54 285538.0 55 257907.5 56 229508.0 57 199061.5 58 169426.5 59 142434.0 60 114329.0 61 88098.0 62 65308.0 63 47317.0 64 34096.5 65 23583.0 66 16506.0 67 12238.5 68 8845.5 69 6115.0 70 4376.0 71 3250.5 72 2355.5 73 1610.5 74 1136.0 75 776.5 76 532.5 77 365.0 78 246.5 79 158.0 80 113.5 81 85.0 82 65.0 83 44.5 84 30.5 85 24.5 86 20.5 87 17.5 88 12.5 89 7.5 90 3.0 91 1.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.4953592556243527E-5 2 5.614558325154794E-4 3 1.2476796278121763E-5 4 1.2476796278121763E-5 5 1.2476796278121763E-5 6 1.2476796278121763E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0064005964906764645 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 3.744483439772356E-5 26-27 0.0 28-29 6.247992832302622E-6 30-31 6.2595246491943304E-6 32-33 0.0 34-35 0.001582590944755092 36-37 0.035443516001859805 38-39 0.1153450804211533 40-41 0.15174623224006045 42-43 0.053267178388342995 44-45 0.0015160026937390473 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.009010779869433874 64-65 0.07262702020830493 66-67 0.18086271302967893 68-69 0.2017189496902441 70-71 0.07740409399557749 72-73 0.005515635101877854 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 185.0 20-21 762.0 22-23 1597.0 24-25 2777.0 26-27 4698.0 28-29 11273.0 30-31 24203.0 32-33 30195.0 34-35 40720.0 36-37 55995.0 38-39 67642.0 40-41 74111.0 42-43 89013.0 44-45 104937.0 46-47 100869.0 48-49 86788.0 50-51 72049.0 52-53 65864.0 54-55 78038.0 56-57 86524.0 58-59 86885.0 60-61 88206.0 62-63 88689.0 64-65 93262.0 66-67 102941.0 68-69 83600.0 70-71 74215.0 72-73 68980.0 74-75 68641.0 76-77 65029.0 78-79 69050.0 80-81 74631.0 82-83 77223.0 84-85 82648.0 86-87 85465.0 88-89 91315.0 90-91 90345.0 92-93 94375.0 94-95 104097.0 96-97 247271.0 98-99 455794.0 100-101 4723976.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.50758995825417 #Duplication Level Percentage of deduplicated Percentage of total 1 87.3261952961951 69.43095328224305 2 7.893408351934347 12.551717492373099 3 2.3495750848608856 5.6042715726974865 4 1.0206515277822996 3.24598172644723 5 0.5086573026614883 2.02210581246406 6 0.2904581898038926 1.3856178392966796 7 0.16606688806339942 0.9242504629251639 8 0.11273118744382557 0.717038802143262 9 0.07671402748395877 0.548941269711675 >10 0.25114495852161345 2.8936930765513953 >50 0.0029414566456787907 0.15934691873794712 >100 0.0010415896300386446 0.17353765660975204 >500 1.911410920189634E-4 0.09769245464628704 >1k 2.2299788150221796E-4 0.24485163315292965 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.9907185112487054E-5 2 0.0 0.0 0.0 0.0 4.9907185112487054E-5 3 0.0 0.0 0.0 0.0 4.9907185112487054E-5 4 0.0 0.0 0.0 0.0 4.9907185112487054E-5 5 0.0 0.0 0.0 0.0 4.9907185112487054E-5 6 0.0 0.0 0.0 0.0 6.238398139060881E-5 7 0.0 0.0 0.0 0.0 7.486077766873058E-5 8 0.0 0.0 0.0 0.0 7.486077766873058E-5 9 0.0 0.0 0.0 0.0 8.733757394685235E-5 10-11 0.0 0.0 0.0 2.4953592556243527E-5 8.733757394685235E-5 12-13 0.0 0.0 0.0 4.366878697342617E-5 9.357597208591323E-5 14-15 0.0 0.0 0.0 6.86223795296697E-5 1.2476796278121762E-4 16-17 0.0 0.0 0.0 1.1852956464215674E-4 1.372447590593394E-4 18-19 0.0 0.0 0.0 1.684367497546438E-4 1.372447590593394E-4 20-21 0.0 0.0 0.0 2.495359255624353E-4 1.372447590593394E-4 22-23 0.0 0.0 0.0 6.987005915748187E-4 1.5595995347652205E-4 24-25 0.0 0.0 0.0 0.002220869737505674 1.746751478937047E-4 26-27 0.0 0.0 0.0 0.0056207967232938544 1.746751478937047E-4 28-29 0.0 0.0 0.0 0.016949727743828413 1.746751478937047E-4 30-31 0.0 0.0 0.0 0.019844344480352664 1.746751478937047E-4 32-33 0.0 0.0 0.0 0.02532165804644812 1.9962874044994822E-4 34-35 1.2476796278121763E-5 0.0 0.0 0.03204041284221669 1.9962874044994822E-4 36-37 1.2476796278121763E-5 0.0 0.0 0.04173488355031729 1.9962874044994822E-4 38-39 1.2476796278121763E-5 0.0 0.0 0.0654158428861924 1.9962874044994822E-4 40-41 1.2476796278121763E-5 0.0 0.0 0.09074997772891864 1.9962874044994822E-4 42-43 1.2476796278121763E-5 0.0 0.0 0.10753750712113147 2.058671385890091E-4 44-45 1.2476796278121763E-5 0.0 0.0 0.1282677041372308 2.1834393486713086E-4 46-47 1.2476796278121763E-5 0.0 0.0 0.15002723684627514 2.370591292843135E-4 48-49 1.2476796278121763E-5 0.0 0.0 0.16994644210429655 2.370591292843135E-4 50-51 1.2476796278121763E-5 0.0 0.0 0.1887988812805385 2.370591292843135E-4 52-53 1.2476796278121763E-5 0.0 0.0 0.22888058932400468 2.6825111997961793E-4 54-55 1.2476796278121763E-5 6.238398139060882E-6 0.0 0.2728800113988011 2.9944311067492234E-4 56-57 1.2476796278121763E-5 1.2476796278121763E-5 0.0 0.31519506597605107 2.9944311067492234E-4 58-59 1.2476796278121763E-5 1.2476796278121763E-5 0.0 0.3498181756478389 2.9944311067492234E-4 60-61 1.2476796278121763E-5 1.2476796278121763E-5 0.0 0.3649026223480881 3.119199069530441E-4 62-63 1.2476796278121763E-5 1.2476796278121763E-5 0.0 0.3830002153495038 3.119199069530441E-4 64-65 1.2476796278121763E-5 1.2476796278121763E-5 0.0 0.3891637527108959 3.119199069530441E-4 66-67 1.2476796278121763E-5 1.2476796278121763E-5 0.0 0.394809503026746 3.119199069530441E-4 68-69 1.2476796278121763E-5 1.2476796278121763E-5 0.0 0.4004614917407352 3.119199069530441E-4 70-71 1.2476796278121763E-5 1.2476796278121763E-5 0.0 0.40519643592828236 3.2439670323116586E-4 72-73 1.2476796278121763E-5 1.2476796278121763E-5 0.0 0.40934497069075787 4.117342771780182E-4 74-75 1.2476796278121763E-5 1.2476796278121763E-5 0.0 0.4128072816579367 4.117342771780182E-4 76-77 1.2476796278121763E-5 1.2476796278121763E-5 0.0 0.41608867907908265 4.117342771780182E-4 78-79 1.2476796278121763E-5 1.8715194417182646E-5 0.0 0.4181036816779994 4.117342771780182E-4 80-81 1.2476796278121763E-5 2.4953592556243527E-5 0.0 0.41885852785282573 4.117342771780182E-4 82-83 1.2476796278121763E-5 2.4953592556243527E-5 0.0 0.4195946588332349 4.117342771780182E-4 84-85 1.2476796278121763E-5 2.4953592556243527E-5 0.0 0.4199440091290223 4.117342771780182E-4 86-87 1.2476796278121763E-5 2.4953592556243527E-5 0.0 0.42009373068435973 4.117342771780182E-4 88 1.2476796278121763E-5 2.4953592556243527E-5 0.0 0.42010620748063787 4.117342771780182E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 17575 0.0 46.964024 1 CTTATAC 12725 0.0 38.109547 1 GTATCAA 32375 0.0 36.55732 1 TATACAC 14655 0.0 34.63545 3 TTATACA 16285 0.0 30.4611 2 ATCAACG 40760 0.0 28.733707 3 TATCAAC 41205 0.0 28.533468 2 TCAACGC 41460 0.0 28.357794 4 CAACGCA 41545 0.0 28.230413 5 AACGCAG 41790 0.0 28.107117 6 ACGCAGA 46660 0.0 25.12956 7 CGCAGAG 46960 0.0 25.00409 8 TACACAT 20665 0.0 24.542503 5 ACACATC 20730 0.0 23.872179 6 ATACACA 22035 0.0 23.838623 4 GCAGAGT 52705 0.0 22.137962 9 CACATCT 22705 0.0 21.668858 7 GAGTACT 33145 0.0 20.494337 12-13 GTACATG 34745 0.0 19.703627 1 TACATGG 34465 0.0 19.636757 2 >>END_MODULE