##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139123_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11899220 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.620788925660676 33.0 33.0 33.0 33.0 33.0 2 32.63125272076657 33.0 33.0 33.0 33.0 33.0 3 32.638809182450615 33.0 33.0 33.0 33.0 33.0 4 36.55365040733762 37.0 37.0 37.0 37.0 37.0 5 36.57516702775476 37.0 37.0 37.0 37.0 37.0 6 36.580671842356054 37.0 37.0 37.0 37.0 37.0 7 36.55688431678715 37.0 37.0 37.0 37.0 37.0 8 36.53489069031416 37.0 37.0 37.0 37.0 37.0 9 36.57090733678342 37.0 37.0 37.0 37.0 37.0 10-11 36.531204650388844 37.0 37.0 37.0 37.0 37.0 12-13 36.51878181931252 37.0 37.0 37.0 37.0 37.0 14-15 38.621680832861315 40.0 37.0 40.0 37.0 40.0 16-17 38.55989468217244 40.0 37.0 40.0 37.0 40.0 18-19 38.574626362064066 40.0 37.0 40.0 37.0 40.0 20-21 38.56809622891434 40.0 37.0 40.0 37.0 40.0 22-23 38.56989977617866 40.0 37.0 40.0 37.0 40.0 24-25 38.56502894038642 40.0 37.0 40.0 37.0 40.0 26-27 38.43839480240127 40.0 37.0 40.0 37.0 40.0 28-29 38.3929967959823 40.0 37.0 40.0 37.0 40.0 30-31 38.230925734278415 40.0 37.0 40.0 37.0 40.0 32-33 38.253701501427486 40.0 37.0 40.0 37.0 40.0 34-35 38.2351044067037 40.0 37.0 40.0 37.0 40.0 36-37 38.18978006976033 40.0 37.0 40.0 37.0 40.0 38-39 38.13549044672639 40.0 37.0 40.0 37.0 40.0 40-41 38.11881746063597 40.0 37.0 40.0 37.0 40.0 42-43 38.078215168839165 40.0 37.0 40.0 33.0 40.0 44-45 38.00893074851698 40.0 37.0 40.0 33.0 40.0 46-47 37.86693683490124 40.0 37.0 40.0 33.0 40.0 48-49 37.888817644449446 40.0 37.0 40.0 33.0 40.0 50-51 37.84213614784784 40.0 37.0 40.0 33.0 40.0 52-53 37.77737571084115 40.0 37.0 40.0 33.0 40.0 54-55 37.6163210876186 40.0 37.0 40.0 33.0 40.0 56-57 37.49875408546246 40.0 37.0 40.0 33.0 40.0 58-59 37.37317793086977 40.0 37.0 40.0 33.0 40.0 60-61 37.207033538768 37.0 37.0 40.0 33.0 40.0 62-63 37.038789084926385 37.0 37.0 40.0 33.0 40.0 64-65 36.86730356209084 37.0 37.0 40.0 33.0 40.0 66-67 36.66892576595108 37.0 37.0 40.0 33.0 40.0 68-69 36.45896567117755 37.0 37.0 40.0 33.0 40.0 70-71 36.22538303304553 37.0 37.0 38.5 33.0 40.0 72-73 35.99986091559761 37.0 37.0 37.0 33.0 40.0 74-75 35.803610473020356 37.0 37.0 37.0 33.0 40.0 76-77 34.13507317745601 35.0 33.0 37.0 30.0 37.0 78-79 35.300012279912266 37.0 33.0 37.0 33.0 37.0 80-81 35.352187375650615 37.0 33.0 37.0 33.0 37.0 82-83 35.20745822952662 37.0 33.0 37.0 33.0 37.0 84-85 35.078061654027806 37.0 33.0 37.0 33.0 37.0 86-87 34.99403995722936 37.0 33.0 37.0 33.0 37.0 88-89 34.860112289059806 37.0 33.0 37.0 33.0 37.0 90-91 34.713661878525905 37.0 33.0 37.0 33.0 37.0 92-93 34.71247247585485 37.0 33.0 37.0 33.0 37.0 94-95 34.77191799900436 37.0 33.0 37.0 33.0 37.0 96-97 34.781487495379366 37.0 33.0 37.0 33.0 37.0 98-99 34.78024226188026 37.0 33.0 37.0 33.0 37.0 100 34.76603366787386 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 2.0 16 2.0 17 5.0 18 12.0 19 15.0 20 91.0 21 406.0 22 1662.0 23 4721.0 24 10565.0 25 20580.0 26 35566.0 27 55899.0 28 81800.0 29 114619.0 30 155334.0 31 208839.0 32 278893.0 33 374831.0 34 519280.0 35 760364.0 36 1349411.0 37 3404479.0 38 4398538.0 39 123306.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.22060941809631 20.108368447679766 14.342082926443918 24.328939207780007 2 14.451619517917983 20.642294200796353 41.92919367824109 22.97689260304457 3 18.117498457882114 26.079280826810496 30.395235990258186 25.407984725049204 4 12.66452759088411 18.175216526797556 38.228631792672125 30.931624089646213 5 13.512221809496758 37.66077104213553 35.34389649069435 13.483110657673361 6 30.00609200772119 37.593444330739295 18.68029414085673 13.720169520682783 7 26.525864720544707 32.59502723707941 22.740540976635444 18.138567065740443 8 24.352091985861257 36.81933773810384 21.090458030022134 17.738112246012765 9 25.383604975788327 16.903788651693137 20.884494950089167 36.82811142242937 10-11 24.372830887866822 26.511942253296873 28.663811587824643 20.451415271011662 12-13 25.31289243653595 23.91562822999194 28.67907190868105 22.092407424791062 14-15 22.36670604575042 25.46466037147616 26.138681022151754 26.029952560621666 16-17 22.14905262697891 28.597269400851484 26.732428680199206 22.5212492919704 18-19 22.173604656439664 27.71992618003533 28.312532250013028 21.793936913511978 20-21 22.894375629654455 26.752568254805333 28.26199928354647 22.091056831993747 22-23 22.629738029814696 26.983002207858036 28.132981149620896 22.254278612706365 24-25 22.493734944184965 27.20539989114777 28.12307405461366 22.177791110053608 26-27 22.516039911467054 27.309938968370208 28.030307616836865 22.14371350332587 28-29 22.24385866222699 27.29549210829358 28.203356121417443 22.257293108061987 30-31 22.854312143859225 27.126479530492524 27.958118987715135 22.061089337933115 32-33 22.1185131295239 27.544732111320226 28.090064158323973 22.246690600831897 34-35 22.392555044186015 27.476233773195315 28.164232198559663 21.96697898405901 36-37 22.31682409373978 27.42270725234327 27.987300325998977 22.27316832791798 38-39 22.294221757830197 27.15774843700712 28.19995984635814 22.348069958804547 40-41 22.450638537407375 27.01186585648408 28.170381238505126 22.36711436760342 42-43 22.4808955702799 27.086781922733984 28.03808745182337 22.39423505516275 44-45 22.455945362956246 27.270843759161444 27.82184936385179 22.451361514030513 46-47 22.67817040964158 27.104885601264257 27.405432866564823 22.811511122529343 48-49 22.534284365268412 27.235694290448475 27.45968989780562 22.770331446477485 50-51 22.436818533055135 27.37195176234654 27.521561578396476 22.669668126201852 52-53 22.568227548134168 27.398579411401258 27.532320058568256 22.50087298189632 54-55 22.516068704008497 27.364215031283468 27.34095411657001 22.778762148138025 56-57 22.732221799231695 27.51676681827538 27.11443148555285 22.636579896940077 58-59 22.458144295059526 27.72936920794776 27.410749916656325 22.401736580336387 60-61 22.721589171957397 27.826426411838877 27.07411128586714 22.37787313033658 62-63 22.634016513684564 27.98700550256567 26.98325223934664 22.39572574440313 64-65 22.566177762081125 27.828882135970375 27.015300774529116 22.589639327419388 66-67 22.68661956211176 27.654134018548316 26.974959348352538 22.684287070987388 68-69 22.62839545537195 27.51831564041169 27.108891903634646 22.744397000581717 70-71 22.631062000571106 27.337210169028552 27.166632056403433 22.86509577399691 72-73 22.676702158166666 27.404137974878147 27.07068223676407 22.848477630191123 74-75 22.60875068113669 27.506824231381188 27.095294715408436 22.789130372073686 76-77 22.72934955388167 27.409043980797342 27.011805960492367 22.84980050482862 78-79 22.618157305644488 27.429278246954507 27.00884828755841 22.943716159842594 80-81 22.674049044267143 27.474887843793333 27.044236711107118 22.80682640083241 82-83 22.677839498592895 27.49603974141782 27.09783708381048 22.72828367617881 84-85 22.78315693284119 27.460894446188867 27.008359533820364 22.74758908714958 86-87 22.66404467488097 27.4509274452647 27.089224709607247 22.795803170247087 88-89 22.754484765058468 27.35807266191623 27.04394337997531 22.843499193049993 90-91 22.73825245057434 27.44507033778128 27.009764862103385 22.80691234954099 92-93 22.808197100729792 27.38935110059157 27.09775624137815 22.70469555730049 94-95 22.60523413139563 27.476904158535948 27.145303440786527 22.772558269281898 96-97 22.718187165327343 27.52415723929755 27.181171098237712 22.576484497137393 98-99 23.82488942714801 29.48304134362764 27.310967289516597 19.381101939707754 100 22.734055869604923 30.464723060641756 21.08932811254104 25.711892957212285 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1880.0 1 1775.5 2 2545.0 3 3587.0 4 4900.0 5 8251.0 6 11047.0 7 12499.0 8 13031.0 9 12380.5 10 11294.0 11 10229.0 12 11213.0 13 15299.5 14 24747.0 15 37918.0 16 49073.5 17 56365.0 18 58748.5 19 56307.5 20 51166.5 21 45438.0 22 41530.5 23 41992.0 24 47770.0 25 58562.0 26 73670.5 27 91239.0 28 111577.5 29 136650.0 30 163442.5 31 192509.0 32 223747.5 33 254001.0 34 282034.0 35 308295.5 36 339266.0 37 370884.5 38 396480.0 39 416484.5 40 435818.0 41 454238.0 42 464690.5 43 473400.0 44 485558.0 45 498098.5 46 515248.5 47 533637.5 48 535501.0 49 529645.5 50 522994.0 51 503510.0 52 474966.0 53 443855.0 54 414932.0 55 385978.0 56 355880.0 57 322872.0 58 287284.5 59 248998.0 60 204441.0 61 163364.5 62 129940.0 63 100191.5 64 74613.0 65 55963.5 66 42813.5 67 33064.5 68 25158.5 69 18155.5 70 13234.5 71 9661.5 72 6695.5 73 4495.5 74 2940.5 75 1879.5 76 1201.0 77 741.0 78 477.5 79 326.0 80 205.5 81 130.5 82 104.0 83 84.0 84 63.0 85 47.0 86 36.5 87 26.5 88 17.5 89 13.0 90 8.5 91 3.5 92 1.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.932899803516533E-4 7 0.0 8 0.0 9 0.0 10-11 0.006508829990537195 12-13 2.5211736567606956E-5 14-15 0.0064836182539695884 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 200.0 20-21 727.0 22-23 1540.0 24-25 3218.0 26-27 4596.0 28-29 8127.0 30-31 19678.0 32-33 25451.0 34-35 37564.0 36-37 60752.0 38-39 69273.0 40-41 68729.0 42-43 79316.0 44-45 95626.0 46-47 92871.0 48-49 84718.0 50-51 76853.0 52-53 76881.0 54-55 87977.0 56-57 97197.0 58-59 96046.0 60-61 99463.0 62-63 98675.0 64-65 101040.0 66-67 110765.0 68-69 95011.0 70-71 92024.0 72-73 87430.0 74-75 89982.0 76-77 90586.0 78-79 96872.0 80-81 98368.0 82-83 95818.0 84-85 95168.0 86-87 101360.0 88-89 108114.0 90-91 113117.0 92-93 116148.0 94-95 140510.0 96-97 397838.0 98-99 726546.0 100-101 7857045.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.34151472816639 #Duplication Level Percentage of deduplicated Percentage of total 1 88.15905153433691 72.59149840335782 2 7.975170088669368 13.13375170631602 3 2.0825972748783292 5.144526425466993 4 0.7801354969611989 2.5695015405198385 5 0.39810595224422995 1.6390323565044482 6 0.19638300499077196 0.9702284458685533 7 0.1155516017314561 0.6660285741083736 8 0.0753435148056412 0.4963119307232423 9 0.04727001367460296 0.3503056074469152 >10 0.16617290975216353 2.1316603299634753 >50 0.0034621744123385276 0.19454097755526317 >100 7.376760528987941E-4 0.09954706171090963 >500 1.875749011669903E-5 0.013066640458066369 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.403912189202317E-6 2 0.0 0.0 0.0 0.0 8.403912189202317E-6 3 0.0 0.0 0.0 8.403912189202317E-6 8.403912189202317E-6 4 0.0 5.0423473135213904E-5 0.0 8.403912189202317E-6 8.403912189202317E-6 5 0.0 5.0423473135213904E-5 0.0 1.6807824378404635E-5 8.403912189202317E-6 6 0.0 5.0423473135213904E-5 0.0 1.6807824378404635E-5 8.403912189202317E-6 7 0.0 6.723129751361854E-5 0.0 1.6807824378404635E-5 1.6807824378404635E-5 8 0.0 9.24430340812255E-5 0.0 1.6807824378404635E-5 1.6807824378404635E-5 9 0.0 1.5967433159484403E-4 0.0 4.201956094601159E-5 1.6807824378404635E-5 10-11 0.0 1.5967433159484403E-4 0.0 5.462542922981506E-5 1.6807824378404635E-5 12-13 1.6807824378404635E-5 1.5967433159484403E-4 0.0 7.563520970282087E-5 1.6807824378404635E-5 14-15 1.6807824378404635E-5 2.1850171691926025E-4 0.0 8.824107798662434E-5 3.361564875680927E-5 16-17 1.6807824378404635E-5 2.2690562910846257E-4 0.0 1.0925085845963012E-4 5.0423473135213904E-5 18-19 1.6807824378404635E-5 2.479154095814684E-4 0.0 1.1345281455423129E-4 5.0423473135213904E-5 20-21 1.6807824378404635E-5 2.6052127786527186E-4 0.0 1.302606389326359E-4 5.0423473135213904E-5 22-23 1.6807824378404635E-5 2.6892519005447416E-4 0.0 1.5547237550024286E-4 5.0423473135213904E-5 24-25 1.6807824378404635E-5 3.151467070950869E-4 0.0 2.0589584863545677E-4 5.0423473135213904E-5 26-27 1.6807824378404635E-5 3.361564875680927E-4 0.0 2.3951149739226605E-4 5.0423473135213904E-5 28-29 1.6807824378404635E-5 3.361564875680927E-4 0.0 3.44560399757295E-4 5.0423473135213904E-5 30-31 2.1009780473005792E-5 3.69772136324902E-4 0.0 8.319873067310294E-4 5.462542922981506E-5 32-33 2.5211736567606952E-5 3.823780046087054E-4 0.0 0.0022648543349900246 7.563520970282085E-5 34-35 2.5211736567606952E-5 4.5801321431152627E-4 0.0 0.003966646553303494 9.24430340812255E-5 36-37 2.5211736567606952E-5 5.29446467919746E-4 0.0 0.006437396736928975 9.24430340812255E-5 38-39 2.5211736567606952E-5 5.378503801089483E-4 0.0 0.010702382172949151 1.0084694627042781E-4 40-41 2.5211736567606952E-5 5.882738532441622E-4 0.0 0.01515645563322638 1.1765477064883245E-4 42-43 2.5211736567606952E-5 6.260914580955726E-4 0.0 0.019307988254692324 1.218567267434336E-4 44-45 3.7817604851410427E-5 7.017266677983936E-4 0.0 0.024245286665848687 1.302606389326359E-4 46-47 5.0423473135213904E-5 7.39544272649804E-4 0.0 0.029422096574397313 1.3446259502723708E-4 48-49 5.0423473135213904E-5 7.437462287444051E-4 0.0 0.0351787764240009 1.512704194056417E-4 50-51 5.0423473135213904E-5 7.94169701879619E-4 0.0 0.040397605893495545 1.512704194056417E-4 52-53 5.0423473135213904E-5 7.983716579742201E-4 0.0 0.0456752627483146 1.5547237550024286E-4 54-55 5.0423473135213904E-5 8.025736140688213E-4 0.0 0.05089409221780923 1.6807824378404633E-4 56-57 5.0423473135213904E-5 8.067755701634225E-4 0.0 0.055596081087667934 1.7648215597324866E-4 58-59 5.0423473135213904E-5 8.109775262580236E-4 0.0 0.060747679259648954 1.7648215597324866E-4 60-61 5.0423473135213904E-5 8.235833945418271E-4 0.0 0.06554631311968348 1.7648215597324866E-4 62-63 5.0423473135213904E-5 8.319873067310294E-4 0.0 0.07032813915533959 1.7648215597324866E-4 64-65 5.0423473135213904E-5 9.160264286230526E-4 0.0 0.07507634954223891 1.7648215597324866E-4 66-67 5.0423473135213904E-5 9.160264286230526E-4 0.0 0.08005566751434129 1.7648215597324866E-4 68-69 5.462542922981506E-5 9.412381651906596E-4 0.0 0.08536694001791714 1.7648215597324866E-4 70-71 5.8827385324416225E-5 9.622479456636654E-4 0.0 0.09019498757061387 1.7648215597324866E-4 72-73 5.8827385324416225E-5 9.706518578528676E-4 0.0 0.09411121065078215 2.0169389254085562E-4 74-75 5.8827385324416225E-5 9.958635944204747E-4 0.0 0.09680466450742149 2.0169389254085562E-4 76-77 5.8827385324416225E-5 0.0010462870675556884 0.0 0.09968720638831788 2.0169389254085562E-4 78-79 6.302934141901739E-5 0.0010672968480286943 0.0 0.10165372184059124 2.0169389254085562E-4 80-81 6.723129751361854E-5 0.0010714988041232954 0.0 0.1022125820011732 2.0169389254085562E-4 82-83 6.723129751361854E-5 0.0010757007602178966 0.0 0.10254033457655207 2.0169389254085562E-4 84-85 6.723129751361854E-5 0.0011009124967855037 0.0 0.10272101868861992 2.0169389254085562E-4 86-87 7.143325360821969E-5 0.0011093164089747058 0.0 0.10278404803003895 2.0589584863545677E-4 88 7.563520970282085E-5 0.001168143794299122 0.0 0.10278824998613355 2.1009780473005795E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16265 0.0 42.802532 1 CTTATAC 10330 0.0 38.913174 1 GTATCAA 27265 0.0 33.2506 1 TATACAC 15350 0.0 30.059528 3 TTATACA 14495 0.0 28.675907 2 TCAACGC 31375 0.0 28.161148 4 ATCAACG 31755 0.0 27.808468 3 CAACGCA 32110 0.0 27.544104 5 TATCAAC 33175 0.0 26.888865 2 AACGCAG 33475 0.0 26.574257 6 CGCAGAG 38280 0.0 23.205267 8 ACGCAGA 38310 0.0 23.17574 7 GTACATG 35450 0.0 21.882158 1 TACACAT 20075 0.0 21.687555 5 ACACATC 19165 0.0 21.222183 6 TACATGG 35330 0.0 21.169727 2 ACATCTC 19610 0.0 20.828012 8 ACATGGG 35450 0.0 20.663801 3 GCAGAGT 45810 0.0 19.412195 9 GAGTACT 24355 0.0 19.299263 12-13 >>END_MODULE