##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139122_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11618402 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.6151277086126 33.0 33.0 33.0 33.0 33.0 2 32.62185720549177 33.0 33.0 33.0 33.0 33.0 3 32.62836025126347 33.0 33.0 33.0 33.0 33.0 4 36.54279745183546 37.0 37.0 37.0 37.0 37.0 5 36.566666052698125 37.0 37.0 37.0 37.0 37.0 6 36.57410476931337 37.0 37.0 37.0 37.0 37.0 7 36.54969297843197 37.0 37.0 37.0 37.0 37.0 8 36.54035503333419 37.0 37.0 37.0 37.0 37.0 9 36.5757368354099 37.0 37.0 37.0 37.0 37.0 10-11 36.52635762646189 37.0 37.0 37.0 37.0 37.0 12-13 36.51289123065288 37.0 37.0 37.0 37.0 37.0 14-15 38.60766235322207 40.0 37.0 40.0 37.0 40.0 16-17 38.54670246390167 40.0 37.0 40.0 37.0 40.0 18-19 38.556778935691845 40.0 37.0 40.0 37.0 40.0 20-21 38.55284633327065 40.0 37.0 40.0 37.0 40.0 22-23 38.548687394607896 40.0 37.0 40.0 37.0 40.0 24-25 38.54734636423255 40.0 37.0 40.0 37.0 40.0 26-27 38.42667350808483 40.0 37.0 40.0 37.0 40.0 28-29 38.375034803573996 40.0 37.0 40.0 37.0 40.0 30-31 38.22510169587636 40.0 37.0 40.0 37.0 40.0 32-33 38.24188059366343 40.0 37.0 40.0 37.0 40.0 34-35 38.220721734048766 40.0 37.0 40.0 37.0 40.0 36-37 38.17533166600574 40.0 37.0 40.0 37.0 40.0 38-39 38.12198128283382 40.0 37.0 40.0 37.0 40.0 40-41 38.0923182265952 40.0 37.0 40.0 33.0 40.0 42-43 38.04613619674118 40.0 37.0 40.0 33.0 40.0 44-45 37.97186789985578 40.0 37.0 40.0 33.0 40.0 46-47 37.82478829974366 40.0 37.0 40.0 33.0 40.0 48-49 37.8364079891166 40.0 37.0 40.0 33.0 40.0 50-51 37.79454902774484 40.0 37.0 40.0 33.0 40.0 52-53 37.72765307755856 40.0 37.0 40.0 33.0 40.0 54-55 37.556053624498446 40.0 37.0 40.0 33.0 40.0 56-57 37.43662395111098 40.0 37.0 40.0 33.0 40.0 58-59 37.30427098049503 38.5 37.0 40.0 33.0 40.0 60-61 37.13142605867517 37.0 37.0 40.0 33.0 40.0 62-63 36.95554164153737 37.0 37.0 40.0 33.0 40.0 64-65 36.77366248162627 37.0 37.0 40.0 33.0 40.0 66-67 36.5671614484107 37.0 37.0 40.0 33.0 40.0 68-69 36.35030775810942 37.0 37.0 40.0 33.0 40.0 70-71 36.111326027863676 37.0 37.0 37.0 33.0 40.0 72-73 35.884516271267444 37.0 37.0 37.0 33.0 40.0 74-75 35.690147552904904 37.0 35.0 37.0 33.0 40.0 76-77 34.007399127625106 35.0 33.0 37.0 30.0 37.0 78-79 35.20127316865285 37.0 33.0 37.0 33.0 37.0 80-81 35.26464766239191 37.0 33.0 37.0 33.0 37.0 82-83 35.12886826279781 37.0 33.0 37.0 33.0 37.0 84-85 35.00180917069657 37.0 33.0 37.0 33.0 37.0 86-87 34.919209186893774 37.0 33.0 37.0 33.0 37.0 88-89 34.78717392716447 37.0 33.0 37.0 33.0 37.0 90-91 34.64350896979144 37.0 33.0 37.0 33.0 37.0 92-93 34.64243081157066 37.0 33.0 37.0 33.0 37.0 94-95 34.70176334444204 37.0 33.0 37.0 33.0 37.0 96-97 34.708287602454476 37.0 33.0 37.0 33.0 37.0 98-99 34.708807475092286 37.0 33.0 37.0 33.0 37.0 100 34.69838156457816 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 25.0 20 84.0 21 417.0 22 1618.0 23 4659.0 24 10415.0 25 20338.0 26 35364.0 27 55862.0 28 82576.0 29 115734.0 30 156692.0 31 209242.0 32 278257.0 33 374098.0 34 519683.0 35 763104.0 36 1363192.0 37 3405357.0 38 4113001.0 39 108682.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.83706158557778 19.794692936257498 14.216748568348727 24.151496909815997 2 14.841447214513664 20.622001201197893 41.4745332447612 23.062018339527242 3 18.462065609366935 25.63020284545155 30.085875837313942 25.82185570786757 4 12.776180407598222 17.87615026575944 38.04491357761592 31.302755749026417 5 13.810573949842672 37.43348698039541 35.10363989815467 13.652299171607249 6 30.67475844308759 37.081908148984624 18.58648968272685 13.656843725200932 7 27.124160448226874 32.224001200853614 22.59263365134035 18.05920469957917 8 24.739581226402734 36.60660046020098 20.726103297165995 17.927715016230287 9 25.791423449750102 16.77272113434542 20.71235964398199 36.72349577192249 10-11 24.731501553883675 26.385861530694854 28.404335122419177 20.47830179300229 12-13 25.5755342570606 23.846070722041297 28.44631238181194 22.132082639086164 14-15 22.600102060179008 25.2402173571079 26.036957284539895 26.1227232981732 16-17 22.341260872192233 28.348166985442575 26.685662107405133 22.62491003496006 18-19 22.349880818377603 27.49784781074024 28.29907675771591 21.853194613166252 20-21 23.11827871378573 26.63650452683862 28.202472950024514 22.04274380935113 22-23 22.88698074538166 26.612709754208215 28.042755732084462 22.457553768325667 24-25 22.64717604300683 26.807042068107922 28.084452022189442 22.461329866695802 26-27 22.596303448912604 26.942318827423627 28.075936899512417 22.385440824151353 28-29 22.451669821033228 26.93785674567511 28.114149482725097 22.496323950566566 30-31 22.81372815131676 26.769235346481906 28.013055580648437 22.403980921552897 32-33 22.49377301845061 27.00724128897492 27.979404149190117 22.519581543384344 34-35 22.665242496155944 27.044324384979042 28.00004190604267 22.29039121282235 36-37 22.73098254107648 26.944167398991798 27.848409588745927 22.4764404711858 38-39 22.537762161928637 27.012993190406565 27.941060763986243 22.508183883678555 40-41 22.749561258054058 26.891738875570237 27.858412387902593 22.500287478473115 42-43 22.684503143944752 26.95648735982021 27.682298868042217 22.67671062819282 44-45 22.715498286294874 27.076500998431875 27.500319064485158 22.707681650788096 46-47 22.92168395079606 27.056362164190688 27.16846586968389 22.85348801532937 48-49 22.752461556878085 27.193611347137015 27.190396267183804 22.8635308288011 50-51 22.753552950350944 27.345165063841435 27.134318028944943 22.76696395686267 52-53 22.90506647169779 27.238825612809354 27.077524938960075 22.778582976532782 54-55 22.852023546983265 27.13200280428326 27.0687257710719 22.947247877661574 56-57 22.886086435440653 27.3070760621012 26.979156968530326 22.827680533927825 58-59 22.802152634212852 27.380036142441828 27.056941638797138 22.760869584548185 60-61 22.92883400469819 27.388794080402818 26.97905441673722 22.70331749816178 62-63 22.839313723863334 27.501564423509283 26.932109986877435 22.72701186574995 64-65 22.848067875397163 27.436875788621307 26.86565611950965 22.849400216471878 66-67 22.876379067791 27.377008118165456 26.81322930429586 22.93338350974768 68-69 22.865310422718625 27.32632708811618 26.898334777324045 22.910027711841146 70-71 22.874021047223252 27.14613934514774 26.950593627957716 23.0292459796713 72-73 22.916171466164823 27.176618434386008 26.89244036594498 23.01476973350419 74-75 22.791765773813264 27.317044523380257 26.880726921976056 23.010462780830423 76-77 22.93536722470995 27.222549206735795 26.837752439382196 23.00433112917206 78-79 22.879392624176013 27.259807863111067 26.79340888152068 23.067390631192236 80-81 22.919828006961207 27.29945061067534 26.804746479187123 22.975974903176326 82-83 22.927419630246977 27.25062363875064 26.854689507145146 22.96726722385724 84-85 22.989769830368452 27.245590729181046 26.83111953463252 22.933519905817988 86-87 22.89893613355369 27.22210164331671 26.909336338063056 22.969625885066545 88-89 22.935463960190464 27.219476964713152 26.835652431766743 23.00940664332964 90-91 22.98615813829194 27.26719213711803 26.812593243963732 22.934056480626296 92-93 22.946014663510827 27.211377492216304 26.911261632309902 22.931346211962968 94-95 22.877799185929042 27.23560925461826 26.91551792932514 22.971073630127556 96-97 22.972815966694792 27.32720679416071 26.948597872358754 22.751379366785745 98-99 24.081537551199194 29.282057035710718 27.109474444589598 19.526930968500487 100 22.9837046237829 30.24481381082753 20.884100889888973 25.887380675500598 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1880.0 1 1712.0 2 2404.0 3 3457.5 4 4710.5 5 7812.5 6 10442.5 7 11968.5 8 12691.5 9 12424.5 10 11560.5 11 10521.5 12 11428.5 13 15184.5 14 23991.0 15 36738.5 16 47830.5 17 54669.0 18 56847.0 19 54612.0 20 49362.0 21 43196.0 22 38741.0 23 38487.5 24 42875.5 25 51978.5 26 65310.0 27 81525.0 28 101278.5 29 125418.5 30 150625.5 31 176788.0 32 205761.0 33 233782.5 34 260842.0 35 286631.5 36 312795.5 37 340519.5 38 366226.5 39 387004.0 40 406721.0 41 426321.0 42 440948.5 43 453990.0 44 466299.5 45 479306.5 46 492749.0 47 503131.5 48 505466.5 49 499369.0 50 491884.5 51 481701.5 52 465633.5 53 444294.5 54 422443.5 55 397980.0 56 368888.0 57 336334.5 58 300716.5 59 261820.5 60 219397.0 61 180492.0 62 145606.0 63 113041.0 64 84783.5 65 63566.5 66 48682.5 67 37491.0 68 28376.0 69 20344.5 70 14581.5 71 10734.0 72 7636.5 73 5264.0 74 3571.5 75 2447.0 76 1624.5 77 987.0 78 615.5 79 402.0 80 269.5 81 185.0 82 131.5 83 98.0 84 75.0 85 54.0 86 34.0 87 21.0 88 15.5 89 10.5 90 5.5 91 2.5 92 1.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.893547839022957E-4 7 0.0 8 0.0 9 8.607035631922532E-6 10-11 0.0063433852607269045 12-13 1.2910553447883797E-5 14-15 0.00642515209923017 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 259.0 20-21 706.0 22-23 1529.0 24-25 3923.0 26-27 4608.0 28-29 7371.0 30-31 18910.0 32-33 24032.0 34-35 33508.0 36-37 50678.0 38-39 61011.0 40-41 62814.0 42-43 75460.0 44-45 91320.0 46-47 88685.0 48-49 80354.0 50-51 72931.0 52-53 71877.0 54-55 79486.0 56-57 84544.0 58-59 84443.0 60-61 84136.0 62-63 81922.0 64-65 87372.0 66-67 94093.0 68-69 90034.0 70-71 89465.0 72-73 84631.0 74-75 87542.0 76-77 88092.0 78-79 93897.0 80-81 96246.0 82-83 93031.0 84-85 93800.0 86-87 99829.0 88-89 107347.0 90-91 112192.0 92-93 115774.0 94-95 139327.0 96-97 395542.0 98-99 721454.0 100-101 7764227.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.92590048831549 #Duplication Level Percentage of deduplicated Percentage of total 1 88.66991049668366 73.5303217415583 2 7.648426513144935 12.685053118425014 3 1.9702609895648426 4.901570002699924 4 0.7564073793565327 2.5090305227658933 5 0.36177983986941786 1.500045949984503 6 0.18129485128353232 0.9020423277949293 7 0.12078869580082213 0.701155795766467 8 0.07586569414858893 0.5032984802754291 9 0.048852987297930216 0.36460601669025916 >10 0.1611328555518761 2.0416935972428103 >50 0.004281465787145229 0.23478847530872413 >100 9.79108362213005E-4 0.11648269455399635 >500 1.912314849827566E-5 0.009911276933695543 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.607035631922532E-6 2 0.0 2.5821106895767593E-5 0.0 0.0 8.607035631922532E-6 3 0.0 2.5821106895767593E-5 0.0 0.0 8.607035631922532E-6 4 0.0 7.746332068730278E-5 0.0 1.7214071263845063E-5 8.607035631922532E-6 5 0.0 8.607035631922531E-5 0.0 1.7214071263845063E-5 8.607035631922532E-6 6 0.0 8.607035631922531E-5 0.0 1.7214071263845063E-5 8.607035631922532E-6 7 0.0 9.467739195114784E-5 0.0 1.7214071263845063E-5 8.607035631922532E-6 8 0.0 1.377125701107605E-4 0.0 3.4428142527690127E-5 8.607035631922532E-6 9 0.0 2.1517589079806328E-4 0.0 6.0249249423457716E-5 2.5821106895767593E-5 10-11 4.303517815961266E-6 2.1517589079806328E-4 0.0 8.607035631922531E-5 2.5821106895767593E-5 12-13 8.607035631922532E-6 2.1517589079806328E-4 0.0 9.037387413518658E-5 2.5821106895767593E-5 14-15 8.607035631922532E-6 3.0124624711728857E-4 0.0 1.0758794539903164E-4 3.0124624711728858E-5 16-17 8.607035631922532E-6 3.0124624711728857E-4 0.0 1.2910553447883797E-4 4.3035178159612657E-5 18-19 8.607035631922532E-6 3.098532827492111E-4 0.0 1.3340905229479924E-4 6.0249249423457716E-5 20-21 8.607035631922532E-6 3.1846031838113364E-4 0.0 1.635336770065281E-4 6.455276723941898E-5 22-23 8.607035631922532E-6 3.614954965407463E-4 0.0 1.764442304544119E-4 9.037387413518658E-5 24-25 8.607035631922532E-6 4.1744122814824276E-4 0.0 1.979618195342182E-4 1.2910553447883797E-4 26-27 8.607035631922532E-6 4.4756585285997164E-4 0.0 2.3238996206190833E-4 1.2910553447883797E-4 28-29 8.607035631922532E-6 4.518693706759329E-4 0.0 3.4428142527690125E-4 1.2910553447883797E-4 30-31 8.607035631922532E-6 5.078151022834293E-4 0.0 6.885628505538025E-4 1.3340905229479924E-4 32-33 8.607035631922532E-6 5.078151022834293E-4 0.0 0.0016912825016727772 1.7214071263845063E-4 34-35 8.607035631922532E-6 5.895819407866934E-4 0.0 0.002982337846461157 1.8074774827037316E-4 36-37 8.607035631922532E-6 6.756522971059188E-4 0.0 0.004979170113067184 1.8074774827037316E-4 38-39 8.607035631922532E-6 6.885628505538025E-4 0.0 0.008301485866989282 1.8505126608633443E-4 40-41 8.607035631922532E-6 7.746332068730278E-4 0.0 0.011817459922629635 1.8935478390229567E-4 42-43 8.607035631922532E-6 8.004543137687954E-4 0.0 0.015273184728846532 1.8935478390229567E-4 44-45 8.607035631922532E-6 8.994352235359045E-4 0.0 0.019438989974697035 1.8935478390229567E-4 46-47 8.607035631922532E-6 9.812020620391685E-4 0.0 0.024086789215935205 2.0656885516614075E-4 48-49 8.607035631922532E-6 9.941126154870525E-4 0.0 0.028308540193393204 2.2378292642998582E-4 50-51 8.607035631922532E-6 0.0011103075965180065 0.0 0.032728252990385426 2.2378292642998582E-4 52-53 8.607035631922532E-6 0.0011103075965180065 0.0 0.036885451200604005 2.4099699769383087E-4 54-55 8.607035631922532E-6 0.0011232181499658904 0.0 0.04139553787173141 2.625145867736372E-4 56-57 8.607035631922532E-6 0.0011533427746776193 0.0 0.04650381351927743 2.75425140221521E-4 58-59 8.607035631922532E-6 0.0011576462924935806 0.0 0.051594875095559614 2.8403217585344355E-4 60-61 8.607035631922532E-6 0.0011705568459414641 0.0 0.05675479295689717 2.8403217585344355E-4 62-63 8.607035631922532E-6 0.0011963779528372318 0.0 0.061660803267093015 2.926392114853661E-4 64-65 8.607035631922532E-6 0.00135991162984376 0.0 0.06666579448705597 2.9694272930132735E-4 66-67 8.607035631922532E-6 0.0014115538436352952 0.0 0.07197633547195217 3.0554976493324984E-4 68-69 8.607035631922532E-6 0.0014373749505310627 0.0 0.07756660511488585 3.098532827492111E-4 70-71 8.607035631922532E-6 0.0014761066108747141 0.0 0.0822488324986517 3.270673540130562E-4 72-73 8.607035631922532E-6 0.0014804101286906754 0.0 0.08587669801750705 3.873166034365139E-4 74-75 8.607035631922532E-6 0.0015105347534024043 0.0 0.08903117657660667 3.873166034365139E-4 76-77 8.607035631922532E-6 0.001605212145353552 0.0 0.09191883703111667 3.873166034365139E-4 78-79 8.607035631922532E-6 0.0016267297344333585 0.0 0.09383820597703539 3.873166034365139E-4 80-81 8.607035631922532E-6 0.0016310332522493196 0.0 0.09446221606034977 3.959236390684364E-4 82-83 8.607035631922532E-6 0.0016482473235131649 0.0 0.09481080100344264 4.6047640630785544E-4 84-85 8.607035631922532E-6 0.001652550841329126 0.0 0.09500876282297686 4.6477992412381666E-4 86-87 8.607035631922532E-6 0.0016611578769610486 0.0 0.09513786835745569 4.733869597557392E-4 88 8.607035631922532E-6 0.0017644423045441188 0.0 0.0951593859465355 4.8199399538766173E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16115 0.0 44.3743 1 GTATCAA 26940 0.0 34.396896 1 TCAACGC 31570 0.0 28.78272 4 ATCAACG 31880 0.0 28.500385 3 CAACGCA 32680 0.0 27.701014 5 TATCAAC 33540 0.0 27.3334 2 AACGCAG 33570 0.0 27.017855 6 ACGCAGA 38145 0.0 23.777206 7 CGCAGAG 38665 0.0 23.469563 8 GTACATG 35570 0.0 21.92921 1 TACATGG 35940 0.0 21.29666 2 ACATGGG 36440 0.0 20.438032 3 GCAGAGT 45865 0.0 19.758995 9 GAGTACT 24405 0.0 19.189987 12-13 CATGGGG 28055 0.0 18.823269 4 CTTATAC 6730 0.0 18.7207 1 CAGAGTA 43595 0.0 18.36 10-11 AGAGTAC 40020 0.0 17.925941 10-11 TATACAC 10195 0.0 17.883322 3 GTACTTT 26770 0.0 17.518969 14-15 >>END_MODULE