##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139121_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10061043 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.622869318817145 33.0 33.0 33.0 33.0 33.0 2 32.62445692757699 33.0 33.0 33.0 33.0 33.0 3 32.628656392781544 33.0 33.0 33.0 33.0 33.0 4 36.54376936864299 37.0 37.0 37.0 37.0 37.0 5 36.56851441744161 37.0 37.0 37.0 37.0 37.0 6 36.57613559548449 37.0 37.0 37.0 37.0 37.0 7 36.551185697148895 37.0 37.0 37.0 37.0 37.0 8 36.54257684814586 37.0 37.0 37.0 37.0 37.0 9 36.57683751078293 37.0 37.0 37.0 37.0 37.0 10-11 36.5274003401039 37.0 37.0 37.0 37.0 37.0 12-13 36.51312334118839 37.0 37.0 37.0 37.0 37.0 14-15 38.60788866522089 40.0 37.0 40.0 37.0 40.0 16-17 38.548569268613605 40.0 37.0 40.0 37.0 40.0 18-19 38.562924887608574 40.0 37.0 40.0 37.0 40.0 20-21 38.558238465363026 40.0 37.0 40.0 37.0 40.0 22-23 38.55405228703352 40.0 37.0 40.0 37.0 40.0 24-25 38.55291528825071 40.0 37.0 40.0 37.0 40.0 26-27 38.431015710784116 40.0 37.0 40.0 37.0 40.0 28-29 38.3826543382817 40.0 37.0 40.0 37.0 40.0 30-31 38.231451743026064 40.0 37.0 40.0 37.0 40.0 32-33 38.24767742892719 40.0 37.0 40.0 37.0 40.0 34-35 38.22565088349117 40.0 37.0 40.0 37.0 40.0 36-37 38.180283461521434 40.0 37.0 40.0 37.0 40.0 38-39 38.13122223512523 40.0 37.0 40.0 37.0 40.0 40-41 38.09829513629094 40.0 37.0 40.0 33.0 40.0 42-43 38.04657467276893 40.0 37.0 40.0 33.0 40.0 44-45 37.97130633775649 40.0 37.0 40.0 33.0 40.0 46-47 37.81740879618205 40.0 37.0 40.0 33.0 40.0 48-49 37.82662797117428 40.0 37.0 40.0 33.0 40.0 50-51 37.7931355662987 40.0 37.0 40.0 33.0 40.0 52-53 37.72376710698205 40.0 37.0 40.0 33.0 40.0 54-55 37.551657809100234 40.0 37.0 40.0 33.0 40.0 56-57 37.43482066053024 40.0 37.0 40.0 33.0 40.0 58-59 37.30091336797693 38.5 37.0 40.0 33.0 40.0 60-61 37.129236724478766 37.0 37.0 40.0 33.0 40.0 62-63 36.95341229043618 37.0 37.0 40.0 33.0 40.0 64-65 36.76871835206637 37.0 37.0 40.0 33.0 40.0 66-67 36.559952158251875 37.0 37.0 40.0 33.0 40.0 68-69 36.34288334385443 37.0 37.0 40.0 33.0 40.0 70-71 36.105594496852945 37.0 37.0 37.0 33.0 40.0 72-73 35.880530734031154 37.0 37.0 37.0 33.0 40.0 74-75 35.686987443952276 37.0 35.0 37.0 33.0 40.0 76-77 34.004632520311354 35.0 33.0 37.0 30.0 37.0 78-79 35.19943846608603 37.0 33.0 37.0 33.0 37.0 80-81 35.26258734903638 37.0 33.0 37.0 33.0 37.0 82-83 35.12623010237717 37.0 33.0 37.0 33.0 37.0 84-85 34.9973069601319 37.0 33.0 37.0 33.0 37.0 86-87 34.91442954042229 37.0 33.0 37.0 33.0 37.0 88-89 34.77898560596017 37.0 33.0 37.0 33.0 37.0 90-91 34.631403932484346 37.0 33.0 37.0 33.0 37.0 92-93 34.63142726292213 37.0 33.0 37.0 33.0 37.0 94-95 34.69169202916659 37.0 33.0 37.0 33.0 37.0 96-97 34.698389924998025 37.0 33.0 37.0 33.0 37.0 98-99 34.699914720303575 37.0 33.0 37.0 33.0 37.0 100 34.69343736619862 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 13.0 20 72.0 21 371.0 22 1383.0 23 3867.0 24 8781.0 25 17570.0 26 30485.0 27 48145.0 28 71493.0 29 100279.0 30 136333.0 31 182500.0 32 242348.0 33 326558.0 34 451903.0 35 661748.0 36 1180721.0 37 2953672.0 38 3550590.0 39 92210.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.99205788107655 19.768189043621025 14.255092638009797 23.984660437292636 2 14.940001747333751 20.54801872927091 41.48280650425607 23.029173019139268 3 18.48547908999097 25.611489782918134 29.976762846555772 25.92626828053513 4 12.79499550891493 17.70997301174441 38.14801308373297 31.34701839560769 5 13.776802265928096 37.40840785592508 35.12769998100595 13.687089897140883 6 30.74112307410336 37.150766303403586 18.465250270648287 13.642860351844762 7 27.19449663419588 32.20299326819297 22.646926367375627 17.95558373023552 8 24.752384022213203 36.69831249106082 20.577478895577723 17.971824591148252 9 25.856364991184318 16.811249092166687 20.759070406517495 36.57331551013151 10-11 24.76923278015997 26.43052218008841 28.358281872947806 20.441963166803813 12-13 25.593526992532183 23.941218016980745 28.44127874627698 22.023976244210093 14-15 22.621975299732803 25.282134059190824 26.107575292655532 25.988315348420837 16-17 22.242147260477864 28.336172502194852 26.80787667839209 22.613803558935192 18-19 22.29440327409395 27.498610233551336 28.5050516134361 21.701934878918617 20-21 23.03596596077381 26.63340690100876 28.433804672379825 21.896822465837598 22-23 22.832044325757337 26.57529548765341 28.27939481504344 22.31326537154581 24-25 22.568728247298207 26.766314911613165 28.28065491701785 22.38430192407078 26-27 22.48981804257774 26.878711628068885 28.23893162796943 22.392538701383952 28-29 22.443647047310893 26.92347128407665 28.288435260165617 22.34444640844684 30-31 22.72509728538983 26.79414952249322 28.162368934718884 22.318384257398066 32-33 22.451979283459885 26.983742383918347 28.136593701246106 22.427684631375662 34-35 22.608286131394742 26.953896842198183 28.12987952815339 22.307937498253686 36-37 22.60354738218575 26.958417779412684 28.019076247726865 22.418958590674706 38-39 22.490575401097963 27.066245179654082 28.07452274816423 22.368656671083727 40-41 22.72728883794031 26.922048672996535 27.94017243753848 22.410490051524675 42-43 22.58772985061228 27.031131127170738 27.743116123069438 22.638022899147543 44-45 22.656457502894465 27.11819467418424 27.592497259359455 22.63285056356184 46-47 22.813605215165698 27.15441975451075 27.291246626107068 22.740728404216487 48-49 22.691921005329885 27.275686923140753 27.243391217828854 22.789000853700507 50-51 22.72952164328591 27.42629965113884 27.12854584117877 22.715632864396476 52-53 22.910892251282572 27.289914374159107 27.02411093970977 22.77508243484855 54-55 22.813646267573127 27.20278432561245 27.099941081438434 22.88362832537599 56-57 22.789380272006834 27.355620304487303 27.07130387573054 22.78369554777532 58-59 22.787534963395583 27.353191172152968 27.063869763785302 22.795404100666143 60-61 22.874006685061282 27.313893678456353 27.097008150514302 22.71509148596806 62-63 22.841917506783076 27.40203608111103 27.050664669300197 22.7053817428057 64-65 22.850350287281024 27.32119181647207 26.985371212512238 22.84308668373467 66-67 22.891566532281765 27.32999444849958 26.898777272605283 22.879661746613376 68-69 22.798549930682885 27.32244197486696 26.991905549841245 22.88710254460892 70-71 22.81832102363004 27.17613469134399 27.026966083238012 22.97857820178796 72-73 22.851242365878075 27.20779340368211 26.909061950838314 23.0319022796015 74-75 22.73049794951716 27.328990235479463 26.948738043625507 22.99177377137787 76-77 22.91625216204551 27.22198988453661 26.888631375134047 22.973126578283832 78-79 22.833389708230616 27.257899154819537 26.852320482285446 23.056390654664398 80-81 22.846821972274856 27.318759136523784 26.860821032854304 22.973597858347052 82-83 22.911650543211202 27.242896836609994 26.902723936914402 22.942728683264402 84-85 22.9263012653965 27.26745221471812 26.891172735910633 22.915073783974744 86-87 22.831964839127195 27.27369496824517 26.9686189161797 22.925721276447934 88-89 22.867552240174874 27.234344762225042 26.91438267170088 22.983720325899203 90-91 22.93688628555381 27.28684469267581 26.871620771880224 22.90464824989016 92-93 22.909129673269558 27.25208944240476 26.96606713128818 22.8727137530375 94-95 22.7898867050441 27.275377322508582 26.979753642709703 22.954982329737614 96-97 22.917879673819797 27.368777144261138 26.982208540189767 22.7311346417293 98-99 24.062035720969472 29.291669126037167 27.126315786529066 19.519979366464295 100 22.925120154824715 30.28062712095549 20.93912873305378 25.855123991166014 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2023.0 1 1866.5 2 2507.0 3 3475.5 4 4659.0 5 7640.0 6 10200.5 7 11794.0 8 12715.0 9 12562.5 10 11752.0 11 10767.0 12 11529.0 13 15008.0 14 23482.5 15 35480.5 16 45702.5 17 52230.0 18 54150.0 19 51750.0 20 46683.0 21 40540.0 22 36197.0 23 36121.0 24 40590.0 25 49604.0 26 61928.0 27 76129.0 28 93161.0 29 113901.0 30 135634.0 31 157666.0 32 180936.0 33 203823.0 34 226208.5 35 247278.0 36 270042.5 37 292525.5 38 312284.5 39 329995.5 40 346029.0 41 359969.5 42 369883.5 43 380125.5 44 390159.0 45 399977.5 46 405993.5 47 409492.0 48 414186.0 49 414267.5 50 412085.5 51 406785.0 52 396538.0 53 382519.5 54 365238.5 55 344764.5 56 322138.0 57 296605.0 58 266624.5 59 233070.5 60 195316.0 61 159086.0 62 128196.0 63 100054.5 64 75197.0 65 56432.0 66 42934.5 67 33183.0 68 25492.0 69 18397.5 70 12986.5 71 9542.5 72 6935.5 73 4835.5 74 3271.5 75 2189.5 76 1392.0 77 856.5 78 547.0 79 345.0 80 233.5 81 163.5 82 123.0 83 87.5 84 57.0 85 38.0 86 25.0 87 19.5 88 15.5 89 13.0 90 9.0 91 5.5 92 5.0 93 3.5 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.4908991045958157E-4 7 0.0 8 0.0 9 0.0 10-11 0.006306503212440301 12-13 9.939327363972106E-6 14-15 0.006619592024405422 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 140.0 20-21 590.0 22-23 1233.0 24-25 3561.0 26-27 3886.0 28-29 6222.0 30-31 16067.0 32-33 19766.0 34-35 28612.0 36-37 41869.0 38-39 51278.0 40-41 53302.0 42-43 64392.0 44-45 77656.0 46-47 76083.0 48-49 68191.0 50-51 60337.0 52-53 58501.0 54-55 63350.0 56-57 66238.0 58-59 67065.0 60-61 66144.0 62-63 63655.0 64-65 67621.0 66-67 72300.0 68-69 74639.0 70-71 74277.0 72-73 70911.0 74-75 72991.0 76-77 72839.0 78-79 78400.0 80-81 80039.0 82-83 78357.0 84-85 77944.0 86-87 83068.0 88-89 89286.0 90-91 94059.0 92-93 97236.0 94-95 118996.0 96-97 342006.0 98-99 631119.0 100-101 6826817.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.78195121216804 #Duplication Level Percentage of deduplicated Percentage of total 1 89.1536996426231 74.69470913842532 2 7.483340399207354 12.539377204608732 3 1.8613568197900756 4.678443187922651 4 0.6754148090339803 2.2635028231384293 5 0.3090697901768907 1.2947235040877634 6 0.1668805776834669 0.8388948250640786 7 0.09688363377184751 0.5681969914551338 8 0.061124888153150814 0.4096929917677208 9 0.037445102023009415 0.28235013397437864 >10 0.14920019209957527 2.021540444991944 >50 0.004246412753750107 0.23678910463279 >100 0.001316042330329982 0.1606943630822344 >500 2.1690353505389692E-5 0.011085286848895747 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 9.939327363972104E-6 0.0 0.0 0.0 3 0.0 9.939327363972104E-6 0.0 1.987865472794421E-5 0.0 4 0.0 5.963596418383263E-5 0.0 1.987865472794421E-5 0.0 5 0.0 5.963596418383263E-5 0.0 2.9817982091916314E-5 0.0 6 1.0933260100369316E-4 5.963596418383263E-5 0.0 2.9817982091916314E-5 2.9817982091916314E-5 7 1.0933260100369316E-4 5.963596418383263E-5 0.0 2.9817982091916314E-5 2.9817982091916314E-5 8 1.0933260100369316E-4 5.963596418383263E-5 0.0 2.9817982091916314E-5 2.9817982091916314E-5 9 1.0933260100369316E-4 1.0933260100369316E-4 0.0 2.9817982091916314E-5 2.9817982091916314E-5 10-11 1.0933260100369316E-4 1.0933260100369316E-4 0.0 2.9817982091916314E-5 2.9817982091916314E-5 12-13 1.0933260100369316E-4 1.0933260100369316E-4 0.0 2.9817982091916314E-5 2.9817982091916314E-5 14-15 1.0933260100369316E-4 1.987865472794421E-4 0.0 2.9817982091916314E-5 6.460562786581869E-5 16-17 1.3915058309560947E-4 2.0872587464341422E-4 0.0 2.9817982091916314E-5 6.957529154780473E-5 18-19 1.3915058309560947E-4 2.484831840993026E-4 0.0 3.975730945588842E-5 8.945394627574895E-5 20-21 1.3915058309560947E-4 2.8824049355519107E-4 0.0 3.975730945588842E-5 8.945394627574895E-5 22-23 1.3915058309560947E-4 3.2302813932909345E-4 0.0 4.969663681986052E-5 1.0436293732170711E-4 24-25 1.3915058309560947E-4 3.6278544878498185E-4 0.0 6.460562786581869E-5 1.242415920496513E-4 26-27 1.3915058309560947E-4 3.677551124669679E-4 0.0 1.1927192836766527E-4 1.3915058309560947E-4 28-29 1.441202467775955E-4 3.72724776148954E-4 0.0 3.230281393290934E-4 1.3915058309560947E-4 30-31 1.4908991045958157E-4 4.075124219228563E-4 0.0 0.001222537265768569 1.3915058309560947E-4 32-33 1.4908991045958157E-4 4.075124219228563E-4 0.0 0.0035533095326200277 1.3915058309560947E-4 34-35 1.4908991045958157E-4 4.72118049788675E-4 0.0 0.006500320096037756 1.4908991045958157E-4 36-37 1.4908991045958157E-4 5.317540139725076E-4 0.0 0.010853745481457538 1.4908991045958157E-4 38-39 1.5405957414156763E-4 5.6654165974641E-4 0.0 0.01664340367097129 1.4908991045958157E-4 40-41 1.5902923782355367E-4 6.361169512942147E-4 0.0 0.022706393362994272 1.4908991045958157E-4 42-43 1.689685651875258E-4 6.559956060221589E-4 0.0 0.028207811058952835 1.4908991045958157E-4 44-45 1.7393822886951183E-4 7.255708975699637E-4 0.0 0.03442982998879937 1.4908991045958157E-4 46-47 1.789078925514979E-4 7.752675343898242E-4 0.0 0.041461904098809635 1.4908991045958157E-4 48-49 1.789078925514979E-4 7.752675343898242E-4 0.0 0.047897618566981576 1.4908991045958157E-4 50-51 1.789078925514979E-4 8.54782153301601E-4 0.0 0.05395066893164059 1.5902923782355367E-4 52-53 1.789078925514979E-4 8.647214806655731E-4 0.0 0.05971547880274441 1.6896856518752577E-4 54-55 1.789078925514979E-4 8.746608080295453E-4 0.0 0.06541568304598241 1.8387755623348396E-4 56-57 1.789078925514979E-4 8.846001353935174E-4 0.0 0.0700871669070493 1.8884721991547E-4 58-59 1.789078925514979E-4 8.846001353935174E-4 0.0 0.07502701260694344 1.9381688359745603E-4 60-61 1.789078925514979E-4 9.193877811674197E-4 0.0 0.07943510429286507 1.987865472794421E-4 62-63 1.789078925514979E-4 9.243574448494058E-4 0.0 0.08401216454397423 2.3854385673533052E-4 64-65 1.789078925514979E-4 0.0010535687005810432 0.0 0.08838049892043996 2.3854385673533052E-4 66-67 1.987865472794421E-4 0.0010535687005810432 0.0 0.09316131538251055 2.3854385673533052E-4 68-69 1.987865472794421E-4 0.0010585383642630294 0.0 0.09819061502868043 2.4351352041731655E-4 70-71 2.0375621096142816E-4 0.0010734473553089875 0.0 0.10258876738723809 2.484831840993026E-4 72-73 2.2860452937135842E-4 0.0010883563463549456 0.0 0.10595819936362463 2.7830116619121894E-4 74-75 2.2860452937135842E-4 0.0011430226468567921 0.0 0.10847284918670957 2.8824049355519107E-4 76-77 2.2860452937135842E-4 0.0012125979384045968 0.0 0.11110677093816218 2.8824049355519107E-4 78-79 2.2860452937135842E-4 0.0012622945752244572 0.0 0.11296542515522497 2.8824049355519107E-4 80-81 2.2860452937135842E-4 0.0012722339025884293 0.0 0.11349220950551549 2.9817982091916314E-4 82-83 2.2860452937135842E-4 0.0012772035662704153 0.0 0.11384505562693649 3.0811914828313526E-4 84-85 2.4351352041731655E-4 0.0012821732299524015 0.0 0.11399414553739606 3.0811914828313526E-4 86-87 2.484831840993026E-4 0.001331869866772262 0.0 0.11409353881103579 3.0811914828313526E-4 88 2.484831840993026E-4 0.0013815665035921225 0.0 0.11410347813839977 3.2799780301107946E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13260 0.0 48.794323 1 GTATCAA 23330 0.0 36.656536 1 TCAACGC 27970 0.0 29.946102 4 ATCAACG 28565 0.0 29.379173 3 CAACGCA 28745 0.0 29.139444 5 TATCAAC 29635 0.0 28.551603 2 AACGCAG 29665 0.0 28.279427 6 ACGCAGA 33960 0.0 24.677423 7 CGCAGAG 34835 0.0 24.045284 8 GTACATG 31430 0.0 22.179928 1 TACATGG 31520 0.0 21.719212 2 ACATGGG 31895 0.0 20.827385 3 GCAGAGT 40700 0.0 20.625402 9 GAGTACT 22695 0.0 20.12841 12-13 GTGGTAT 6840 0.0 19.764656 1 TGGTATC 6500 0.0 19.46952 2 CATGGGG 24415 0.0 19.214455 4 CAGAGTA 39725 0.0 18.623604 10-11 AGAGTAC 36900 0.0 18.30495 10-11 GTACTTT 25135 0.0 18.200705 14-15 >>END_MODULE