##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139119_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10537175 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.600776773660876 33.0 33.0 33.0 33.0 33.0 2 32.60990464711842 33.0 33.0 33.0 33.0 33.0 3 32.61209413338964 33.0 33.0 33.0 33.0 33.0 4 36.526604996120874 37.0 37.0 37.0 37.0 37.0 5 36.55253927167386 37.0 37.0 37.0 37.0 37.0 6 36.560546066663974 37.0 37.0 37.0 37.0 37.0 7 36.5341026413626 37.0 37.0 37.0 37.0 37.0 8 36.52724909665067 37.0 37.0 37.0 37.0 37.0 9 36.563363804814855 37.0 37.0 37.0 37.0 37.0 10-11 36.511431004989475 37.0 37.0 37.0 37.0 37.0 12-13 36.49715872612916 37.0 37.0 37.0 37.0 37.0 14-15 38.57024904682707 40.0 37.0 40.0 37.0 40.0 16-17 38.50710726546726 40.0 37.0 40.0 37.0 40.0 18-19 38.52448829975776 40.0 37.0 40.0 37.0 40.0 20-21 38.5238046050619 40.0 37.0 40.0 37.0 40.0 22-23 38.51719426906163 40.0 37.0 40.0 37.0 40.0 24-25 38.512722100261264 40.0 37.0 40.0 37.0 40.0 26-27 38.384595088466284 40.0 37.0 40.0 37.0 40.0 28-29 38.32788455929928 40.0 37.0 40.0 37.0 40.0 30-31 38.174112445542576 40.0 37.0 40.0 37.0 40.0 32-33 38.18433973291212 40.0 37.0 40.0 37.0 40.0 34-35 38.15721723023526 40.0 37.0 40.0 37.0 40.0 36-37 38.105704648382726 40.0 37.0 40.0 35.0 40.0 38-39 38.04457635694125 40.0 37.0 40.0 33.0 40.0 40-41 38.02261354315506 40.0 37.0 40.0 33.0 40.0 42-43 37.97549839808802 40.0 37.0 40.0 33.0 40.0 44-45 37.89738118790912 40.0 37.0 40.0 33.0 40.0 46-47 37.74865315369668 40.0 37.0 40.0 33.0 40.0 48-49 37.759777187129615 40.0 37.0 40.0 33.0 40.0 50-51 37.706233403670325 40.0 37.0 40.0 33.0 40.0 52-53 37.63791525801733 40.0 37.0 40.0 33.0 40.0 54-55 37.46631093333044 40.0 37.0 40.0 33.0 40.0 56-57 37.33978284416546 40.0 37.0 40.0 33.0 40.0 58-59 37.20582223904944 37.0 37.0 40.0 33.0 40.0 60-61 37.02990301657045 37.0 37.0 40.0 33.0 40.0 62-63 36.85539688776992 37.0 37.0 40.0 33.0 40.0 64-65 36.679176334632515 37.0 37.0 40.0 33.0 40.0 66-67 36.476632790839844 37.0 37.0 40.0 33.0 40.0 68-69 36.26359129894763 37.0 37.0 40.0 33.0 40.0 70-71 36.0302563813091 37.0 37.0 37.0 33.0 40.0 72-73 35.80668464986546 37.0 37.0 37.0 33.0 40.0 74-75 35.61399346055002 37.0 33.0 37.0 33.0 40.0 76-77 33.9281461876208 35.0 33.0 37.0 27.0 37.0 78-79 35.132820536131916 37.0 33.0 37.0 33.0 37.0 80-81 35.204134235408546 37.0 33.0 37.0 33.0 37.0 82-83 35.06511341179237 37.0 33.0 37.0 33.0 37.0 84-85 34.9382126308666 37.0 33.0 37.0 33.0 37.0 86-87 34.85444988480535 37.0 33.0 37.0 33.0 37.0 88-89 34.71960227008015 37.0 33.0 37.0 33.0 37.0 90-91 34.57258485029981 37.0 33.0 37.0 33.0 37.0 92-93 34.57234425624682 37.0 33.0 37.0 33.0 37.0 94-95 34.63500504843883 37.0 33.0 37.0 33.0 37.0 96-97 34.6442396557087 37.0 33.0 37.0 33.0 37.0 98-99 34.65009207397662 37.0 33.0 37.0 33.0 37.0 100 34.64072690112293 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 10.0 20 83.0 21 428.0 22 1633.0 23 4516.0 24 10629.0 25 20221.0 26 34842.0 27 55369.0 28 80069.0 29 110708.0 30 148721.0 31 197531.0 32 260603.0 33 349577.0 34 481642.0 35 705922.0 36 1255662.0 37 3109293.0 38 3611035.0 39 98680.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.64442556947189 19.887417642774274 14.296573797056611 24.17158299069722 2 14.776465229058072 20.460816110579923 41.780629058547476 22.98208960181453 3 18.34029519297155 25.894853222044805 30.148023545210172 25.61682803977347 4 12.535418648736496 17.964141242790408 37.964587282644544 31.535852825828552 5 13.620975261395962 37.52939473815326 35.11857779717998 13.731052203270803 6 30.394655026329698 37.19538258535134 18.489977177893987 13.91998521042498 7 26.89789246168921 32.33873405348208 22.45457629772686 18.308797187101856 8 24.781689589477253 36.475924524362554 20.755544061857186 17.986841824303003 9 25.799467124727453 16.63743840260791 20.547385803120854 37.015708669543784 10-11 24.6852391370144 26.426188756769214 28.284710725800462 20.60386138041593 12-13 25.60038283514861 23.84032813356714 28.34072897639286 22.218560054891388 14-15 22.68204377331343 25.21362879358949 25.93339734924762 26.17093008384946 16-17 22.250346985790785 28.380272701174654 26.587168762025875 22.78221155100869 18-19 22.238806890841236 27.390277754711295 28.386469808084236 21.984445546363233 20-21 23.153246270590216 26.51196430988101 28.25279052079915 22.08199889872963 22-23 22.89116111937499 26.706953371713904 28.058714060333724 22.343171448577387 24-25 22.58275697714608 26.95191642565534 28.170515933991297 22.29481066320728 26-27 22.501110125019093 27.18063188035974 28.128538352878795 22.18971964174237 28-29 22.400451832858888 27.047555256406646 28.193329252677056 22.358663658057406 30-31 22.882597587894605 26.856273787830016 28.040705021375917 22.220423602899466 32-33 22.50584184531923 27.040764474265355 28.122138072048646 22.331255608366764 34-35 22.574106169246583 26.923546922976023 28.179624223624423 22.322722684152975 36-37 22.469118666528345 27.065523995303558 28.00819338511602 22.457163953052078 38-39 22.416936912296055 26.866338138960106 28.196359023498076 22.52036592524576 40-41 22.623474776709415 26.75165509965675 28.184324167539366 22.44054595609447 42-43 22.590926611487074 26.767615137997087 28.04690539489239 22.59455285562345 44-45 22.563740238809288 27.04738635020023 27.753606809407817 22.635266601582664 46-47 22.861426127479824 26.856661869034536 27.296388202178047 22.98552380130759 48-49 22.692980077408443 26.973940973132283 27.362634079595306 22.97044486986397 50-51 22.5772140678914 27.173528213214187 27.337249623018177 22.91200809587624 52-53 22.728059533347178 27.167063101539163 27.357894950296085 22.746982414817577 54-55 22.75969093253133 27.111157710221512 27.182561233012457 22.946590124234696 56-57 22.851698053388514 27.3281541784854 26.975644932271877 22.844502835854215 58-59 22.620661086135005 27.518207631081214 27.234183011581294 22.626948271202487 60-61 22.889570611970253 27.60773027460754 26.88535248299506 22.61734663042715 62-63 22.720318392815834 27.76269898564483 26.855844110678373 22.661138510860965 64-65 22.737675857687453 27.60804872072003 26.849042813287593 22.80523260830492 66-67 22.77107982779519 27.513522273007386 26.76308625919994 22.952311639997486 68-69 22.77868612227949 27.34218579313097 26.898550121879182 22.980577962710363 70-71 22.786816209654265 27.140075067324183 26.95120449053035 23.121904232491204 72-73 22.844202057563663 27.175938244200136 26.843874122948574 23.135985575287624 74-75 22.75898226344236 27.329555663227005 26.80978356462707 23.101678508703564 76-77 22.90014626206999 27.27641174876586 26.758553133189373 23.06488885597478 78-79 22.874875744668614 27.248952144981896 26.67446478916139 23.2017073211881 80-81 22.8306257205444 27.31949907138567 26.728318920777777 23.121556287292147 82-83 22.976841159896203 27.233021247146667 26.828692079223014 22.96144551373412 84-85 23.035826898066087 27.24954242354511 26.695651271282863 23.018979407105945 86-87 22.836688019111758 27.33748365520653 26.830384192035584 22.995444133646128 88-89 22.946130125497053 27.30240588912095 26.759018436968212 22.99244554841379 90-91 22.975145253194473 27.341866390499465 26.717399214506926 22.965589141799136 92-93 22.981856530199583 27.274986224443232 26.844240792339765 22.89891645301742 94-95 22.799949522095307 27.333284570176993 26.908278419650816 22.958487488076884 96-97 22.926514457654726 27.42074325565087 26.909041480486835 22.743700806207574 98-99 24.09877818404475 29.288092963874007 27.07993500366556 19.533193848415678 100 22.980341588464285 30.275323190038378 20.835214621563118 25.90912059993422 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2123.0 1 1909.0 2 2662.0 3 3838.5 4 5346.5 5 9074.0 6 12058.0 7 13542.0 8 14044.0 9 13249.5 10 11941.5 11 10831.5 12 12136.5 13 16908.5 14 27566.5 15 42401.5 16 54897.0 17 62326.0 18 64078.0 19 60402.5 20 53128.0 21 44933.5 22 39041.5 23 38191.0 24 42296.0 25 50668.5 26 62894.5 27 77643.0 28 95339.0 29 116547.0 30 136859.0 31 157414.0 32 181113.5 33 205543.5 34 230362.0 35 255286.0 36 281945.0 37 306955.0 38 326506.5 39 342892.0 40 359067.5 41 374128.5 42 385729.0 43 398026.5 44 410750.5 45 425394.0 46 444679.5 47 461619.5 48 464609.0 49 462446.5 50 462685.0 51 452644.0 52 434154.0 53 410812.0 54 385056.5 55 358741.0 56 333001.5 57 304470.0 58 273165.5 59 239085.0 60 198713.5 61 160499.5 62 127166.0 63 98482.0 64 74227.0 65 54538.5 66 40613.0 67 30938.0 68 23757.0 69 17879.0 70 12989.0 71 9410.0 72 6765.0 73 4573.0 74 2985.5 75 1877.0 76 1196.5 77 743.5 78 434.0 79 264.0 80 178.0 81 126.0 82 100.0 83 71.5 84 45.5 85 32.5 86 23.0 87 17.0 88 11.0 89 5.0 90 3.0 91 2.5 92 1.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 2.1827482223651026E-4 7 0.0 8 0.0 9 0.0 10-11 0.006491303409120566 12-13 2.372552415614242E-5 14-15 0.006951578577749728 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 154.0 20-21 603.0 22-23 1373.0 24-25 2709.0 26-27 3982.0 28-29 7087.0 30-31 17399.0 32-33 22162.0 34-35 31829.0 36-37 46118.0 38-39 54904.0 40-41 59805.0 42-43 72149.0 44-45 87746.0 46-47 84658.0 48-49 76528.0 50-51 65191.0 52-53 62399.0 54-55 70660.0 56-57 79520.0 58-59 80057.0 60-61 86370.0 62-63 86330.0 64-65 87076.0 66-67 96013.0 68-69 84121.0 70-71 81817.0 72-73 77690.0 74-75 79503.0 76-77 78442.0 78-79 85430.0 80-81 87734.0 82-83 84562.0 84-85 84852.0 86-87 89589.0 88-89 96727.0 90-91 102350.0 92-93 105248.0 94-95 128239.0 96-97 358057.0 98-99 648960.0 100-101 6981032.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.43174106416518 #Duplication Level Percentage of deduplicated Percentage of total 1 87.97644893990113 71.64075409818777 2 7.972828274681526 12.984825752258415 3 2.1022592125531614 5.135718835391543 4 0.8311685397760366 2.7073400524688993 5 0.38725545513224235 1.5767442974007098 6 0.23601667614096397 1.1531549315001544 7 0.13593413759621747 0.7748547446161048 8 0.08861402275716158 0.5772795324652178 9 0.05464297662503817 0.4004705451154805 >10 0.20896174686824498 2.643131319689355 >50 0.004954066867428735 0.2668624205132114 >100 8.479205013808958E-4 0.09930906488311197 >500 6.803059947719057E-5 0.03955440551007907 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.8470628987370902E-5 0.0 0.0 0.0 3 0.0 3.796083864982787E-5 0.0 1.8980419324913935E-5 0.0 4 0.0 1.0439230628702665E-4 0.0 4.745104831228484E-5 0.0 5 0.0 1.0439230628702665E-4 0.0 5.6941257974741804E-5 0.0 6 0.0 1.1388251594948361E-4 0.0 5.6941257974741804E-5 0.0 7 0.0 1.1388251594948361E-4 0.0 6.643146763719877E-5 0.0 8 1.8980419324913935E-5 1.3286293527439754E-4 0.0 7.592167729965574E-5 0.0 9 1.8980419324913935E-5 1.8980419324913936E-4 0.0 7.592167729965574E-5 0.0 10-11 1.8980419324913935E-5 1.8980419324913936E-4 0.0 9.01569917933412E-5 0.0 12-13 1.8980419324913935E-5 1.9454929808036784E-4 0.0 1.0913741111825513E-4 0.0 14-15 1.8980419324913935E-5 2.94196499536166E-4 0.0 1.2811783044316906E-4 0.0 16-17 1.8980419324913935E-5 2.94196499536166E-4 0.0 1.4235314493685452E-4 0.0 18-19 2.8470628987370902E-5 3.2266712852353687E-4 0.0 1.5658845943053998E-4 0.0 20-21 6.168636280597029E-5 3.511377575109078E-4 0.0 1.6133356426176846E-4 0.0 22-23 1.1388251594948361E-4 3.9858880582319264E-4 0.0 1.8505908841791086E-4 0.0 24-25 1.2337272561194058E-4 4.555300637979345E-4 0.0 2.0403950774282482E-4 0.0 26-27 1.2337272561194058E-4 4.745104831228484E-4 0.0 2.7521608021125203E-4 0.0 28-29 1.2337272561194058E-4 4.745104831228484E-4 0.0 6.310989425533883E-4 0.0 30-31 1.2337272561194058E-4 5.314517410975901E-4 0.0 0.0019170223518163074 0.0 32-33 1.47098249768083E-4 5.314517410975901E-4 0.0 0.004488869170342146 0.0 34-35 1.6133356426176846E-4 5.97883208734789E-4 0.0 0.008280207930493704 0.0 36-37 1.6133356426176846E-4 6.595695715407592E-4 0.0 0.014434608896597048 0.0 38-39 1.7082377392422542E-4 6.738048860344447E-4 0.0 0.03265581144851443 0.0 40-41 1.8031398358668238E-4 7.402363536716435E-4 0.0 0.053036036698640765 0.0 42-43 1.8980419324913936E-4 7.829422971526998E-4 0.0 0.06443377850325158 0.0 44-45 1.8980419324913936E-4 9.300405469207828E-4 0.0 0.07941407445543991 0.0 46-47 1.8980419324913936E-4 0.0010249426435453525 0.0 0.09438962530279701 0.0 48-49 1.8980419324913936E-4 0.0010344328532078096 0.0 0.10864392021580738 0.0 50-51 1.8980419324913936E-4 0.0011530604739885216 0.0 0.12300260743510476 0.0 52-53 1.9454929808036784E-4 0.001167295788482207 0.0 0.16094446566560772 0.0 54-55 1.9929440291159632E-4 0.0011720408933134354 0.0 0.20561488254679267 0.0 56-57 1.9929440291159632E-4 0.001176785998144664 0.0 0.2526293812146045 0.0 58-59 1.9929440291159632E-4 0.001176785998144664 0.0 0.2874489604661591 0.0 60-61 1.9929440291159632E-4 0.001186276207807121 0.0 0.310728444768166 0.0 62-63 2.0403950774282482E-4 0.0012100017319632635 0.0 0.3270421151779296 0.0 64-65 2.087846125740533E-4 0.0013570999817313465 0.0 0.33221427944396864 0.0 66-67 2.1827482223651026E-4 0.0013665901913938034 0.0 0.33664620735633605 0.0 68-69 2.1827482223651026E-4 0.0013998059252124028 0.0 0.34160958700980104 0.0 70-71 2.1827482223651026E-4 0.0014235314493685452 0.0 0.34584696562408807 0.0 72-73 2.1827482223651026E-4 0.0014235314493685452 0.0 0.34941528445717185 0.0 74-75 2.2301992706773874E-4 0.0014804727073432868 0.0 0.3522860728800651 0.0 76-77 2.2776503189896722E-4 0.0015611394894741713 0.0 0.35498129242420284 0.0 78-79 2.2776503189896722E-4 0.0015991003281239991 0.0 0.357059648340281 0.0 80-81 2.2776503189896722E-4 0.0016038454329552277 0.0 0.3576148256055347 0.0 82-83 2.2776503189896722E-4 0.0016038454329552277 0.0 0.35809882629832 0.0 84-85 2.2776503189896722E-4 0.001608590537786456 0.0 0.3582838853867379 0.0 86-87 2.372552415614242E-4 0.0016418062716050555 0.0 0.35835506195920636 0.0 88 2.4674545122388116E-4 0.001746198577892082 0.0 0.3583598070640376 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15755 0.0 49.069992 1 GTATCAA 27565 0.0 35.72645 1 TCAACGC 33330 0.0 29.03553 4 ATCAACG 33600 0.0 28.824846 3 CTTATAC 11895 0.0 28.605787 1 CAACGCA 34045 0.0 28.37646 5 TATCAAC 34470 0.0 28.345978 2 AACGCAG 35000 0.0 27.663418 6 ACGCAGA 40255 0.0 24.030634 7 TATACAC 15805 0.0 23.725285 3 CGCAGAG 41105 0.0 23.56544 8 TTATACA 15080 0.0 23.302921 2 GTACATG 37895 0.0 21.543236 1 TACATGG 37755 0.0 21.100986 2 GCAGAGT 47030 0.0 20.526503 9 GTGGTAT 7410 0.0 20.299566 1 ACATGGG 38450 0.0 20.273756 3 GAGTACT 25415 0.0 19.756678 12-13 TGGTATC 7330 0.0 19.001034 2 TACACAT 19815 0.0 18.840036 5 >>END_MODULE