##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139118_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7280606 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.59647109045593 33.0 33.0 33.0 33.0 33.0 2 32.60569271294175 33.0 33.0 33.0 33.0 33.0 3 32.60796051867111 33.0 33.0 33.0 33.0 33.0 4 36.52078837942886 37.0 37.0 37.0 37.0 37.0 5 36.54855076624116 37.0 37.0 37.0 37.0 37.0 6 36.556673716446134 37.0 37.0 37.0 37.0 37.0 7 36.53093149114236 37.0 37.0 37.0 37.0 37.0 8 36.52300921104644 37.0 37.0 37.0 37.0 37.0 9 36.55973582418826 37.0 37.0 37.0 37.0 37.0 10-11 36.50841784323997 37.0 37.0 37.0 37.0 37.0 12-13 36.4939978210605 37.0 37.0 37.0 37.0 37.0 14-15 38.55812043667794 40.0 37.0 40.0 37.0 40.0 16-17 38.495469401860234 40.0 37.0 40.0 37.0 40.0 18-19 38.510003425539026 40.0 37.0 40.0 37.0 40.0 20-21 38.50943676216396 40.0 37.0 40.0 37.0 40.0 22-23 38.50652838715492 40.0 37.0 40.0 37.0 40.0 24-25 38.5047239888446 40.0 37.0 40.0 37.0 40.0 26-27 38.37884855232478 40.0 37.0 40.0 37.0 40.0 28-29 38.320687010635694 40.0 37.0 40.0 37.0 40.0 30-31 38.16792903877542 40.0 37.0 40.0 37.0 40.0 32-33 38.17943970313715 40.0 37.0 40.0 37.0 40.0 34-35 38.15338245186493 40.0 37.0 40.0 37.0 40.0 36-37 38.10486024048076 40.0 37.0 40.0 35.0 40.0 38-39 38.0460310457803 40.0 37.0 40.0 33.0 40.0 40-41 38.02369364840626 40.0 37.0 40.0 33.0 40.0 42-43 37.97186948328627 40.0 37.0 40.0 33.0 40.0 44-45 37.89080685433686 40.0 37.0 40.0 33.0 40.0 46-47 37.74039786760279 40.0 37.0 40.0 33.0 40.0 48-49 37.751594378003716 40.0 37.0 40.0 33.0 40.0 50-51 37.70798691866016 40.0 37.0 40.0 33.0 40.0 52-53 37.64357649391913 40.0 37.0 40.0 33.0 40.0 54-55 37.473478648602224 40.0 37.0 40.0 33.0 40.0 56-57 37.35619161604352 40.0 37.0 40.0 33.0 40.0 58-59 37.22169336950135 37.0 37.0 40.0 33.0 40.0 60-61 37.05080113534715 37.0 37.0 40.0 33.0 40.0 62-63 36.879046083291755 37.0 37.0 40.0 33.0 40.0 64-65 36.7075828879631 37.0 37.0 40.0 33.0 40.0 66-67 36.507273382812784 37.0 37.0 40.0 33.0 40.0 68-69 36.29140950053548 37.0 37.0 40.0 33.0 40.0 70-71 36.05393221565694 37.0 37.0 38.5 33.0 40.0 72-73 35.82974972231071 37.0 37.0 37.0 33.0 40.0 74-75 35.63575239949584 37.0 33.0 37.0 33.0 40.0 76-77 33.95185744357011 35.0 33.0 37.0 27.0 37.0 78-79 35.150660605156204 37.0 33.0 37.0 33.0 37.0 80-81 35.206999995888395 37.0 33.0 37.0 33.0 37.0 82-83 35.06825836455973 37.0 33.0 37.0 33.0 37.0 84-85 34.940794793932696 37.0 33.0 37.0 33.0 37.0 86-87 34.850464587161824 37.0 33.0 37.0 33.0 37.0 88-89 34.71227226170993 37.0 33.0 37.0 33.0 37.0 90-91 34.565150090641794 37.0 33.0 37.0 33.0 37.0 92-93 34.560370335074666 37.0 33.0 37.0 33.0 37.0 94-95 34.61578761171327 37.0 33.0 37.0 33.0 37.0 96-97 34.626758049842394 37.0 33.0 37.0 33.0 37.0 98-99 34.638695738151796 37.0 33.0 37.0 33.0 37.0 100 34.63003129412584 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 8.0 20 65.0 21 300.0 22 1081.0 23 3070.0 24 7103.0 25 13811.0 26 24036.0 27 37505.0 28 54793.0 29 76638.0 30 103797.0 31 136343.0 32 181398.0 33 242731.0 34 335281.0 35 494293.0 36 878782.0 37 2137470.0 38 2490027.0 39 62073.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.80066879048255 19.960962040797153 14.233609125394231 24.004760043326065 2 14.742756303527482 20.754426211224725 41.67595389724427 22.826863588003526 3 18.290620313748608 26.035140481437946 30.22406376612057 25.45017543869288 4 12.53714319934357 17.918137583602245 38.30807490475381 31.236644312300378 5 13.57054618805083 37.608929806117786 35.24055552518568 13.579968480645704 6 30.30278848126952 37.42395194677797 18.61441525238188 13.65884431957063 7 26.69185779315623 32.474494568171934 22.7945860550619 18.039061583609936 8 24.626150625373768 36.680573018235016 20.86566695134993 17.827609405041283 9 25.79215600901299 16.61860518459661 20.777819975125695 36.81141883126471 10-11 24.543618167939833 26.496107288002445 28.5389723800755 20.42130216398222 12-13 25.38965511794693 24.02266707231061 28.660097615514097 21.927580194228362 14-15 22.47167088856409 25.386486819307898 26.202986648740172 25.938855643387843 16-17 22.071747873734687 28.5413398280308 26.851171454683854 22.535740843550663 18-19 22.11388722312401 27.529638329556633 28.646324220813487 21.71015022650587 20-21 22.921193073042705 26.72459688485262 28.526441996663383 21.8277680454413 22-23 22.666490747448112 26.755287003253432 28.41482520981011 22.16339703948835 24-25 22.445679842369408 26.90199465235903 28.467261241322344 22.185064263949215 26-27 22.425516168699115 27.022381826546425 28.411860241309917 22.14024176344454 28-29 22.23010424736357 26.981123034822424 28.450298454077384 22.338474263736625 30-31 22.633760910553775 26.952288772841747 28.314050283928804 22.09990003267567 32-33 22.450502743395827 26.98179592663785 28.40969193053602 22.158009399430302 34-35 22.325501880356878 27.04955100414062 28.49363192942333 22.131315186079174 36-37 22.481379158377457 27.080638690190355 28.228835574625073 22.209146576807118 38-39 22.249808185068837 27.092738482473848 28.357881839775235 22.29957149268208 40-41 22.473693599784525 26.968311989953865 28.27009839758501 22.287896012676605 42-43 22.427588537999878 27.041298149711967 28.09432167151987 22.43679164076828 44-45 22.462340470479166 27.195613269919438 27.88347587002944 22.458570389571957 46-47 22.68926381694193 27.200626523569483 27.488285731333 22.62182392815558 48-49 22.519172400759874 27.32198995846793 27.462847678127073 22.695989962645122 50-51 22.480940862457253 27.48436066394195 27.406985388780296 22.627713084820506 52-53 22.64180243427552 27.398198648669066 27.392988254940626 22.567010662114797 54-55 22.584063916617573 27.342301981831906 27.337309092660604 22.736325008889914 56-57 22.627637820692442 27.487705954920923 27.24108571755569 22.643570506830947 58-59 22.506727499244402 27.499207217091033 27.3094822190544 22.68458306461017 60-61 22.766865869033893 27.534272873936672 27.26965518867342 22.429206068356013 62-63 22.477545125896224 27.661227180541154 27.265559375218317 22.595668318344305 64-65 22.490309579316637 27.561903542095568 27.198853121485218 22.74893375710258 66-67 22.56035712488138 27.52427144240838 27.244882081638718 22.67048935107152 68-69 22.553748503405647 27.607402949543037 27.17408150174544 22.664767045305876 70-71 22.533019001636863 27.44589253701179 27.088821662992096 22.932266798359247 72-73 22.571547078515625 27.461282040093426 26.964379303603657 23.00279157778729 74-75 22.464365762886 27.609884228793398 27.15556721631916 22.77018279200145 76-77 22.63466067298768 27.337993113209 27.079009325114995 22.94833688868833 78-79 22.57967448591753 27.376737312995786 26.860081914934813 23.18350628615187 80-81 22.741778142050006 27.626092459573005 26.890065563287497 22.74206383508949 82-83 22.759721069261975 27.377131075848617 26.964456033126115 22.898691821763293 84-85 22.670958675060902 27.393865933918853 26.919475982765377 23.015699408254868 86-87 22.621804888234767 27.56888381372024 26.965344488840966 22.843966809204034 88-89 22.80665694559944 27.54196830453989 26.900763628605155 22.750611121255517 90-91 22.835452690954277 27.571707910198867 26.91062580050192 22.682213598344937 92-93 22.67186387757725 27.364859015154753 26.994480298196326 22.968796809071673 94-95 22.69684907973426 27.564624669856713 27.04732927492849 22.691196975480537 96-97 22.958268491929715 27.487474976908672 27.071426774438173 22.48282975672344 98-99 23.819082285173028 29.516130325889062 27.320133656944694 19.344653731993215 100 22.70109088822443 30.445065180725113 21.187455297765553 25.666388633284896 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1609.0 1 1383.5 2 1840.5 3 2722.0 4 3687.5 5 6044.0 6 8001.0 7 9177.0 8 9852.5 9 9516.0 10 8673.5 11 7791.0 12 8345.0 13 11239.0 14 18187.5 15 28100.5 16 36596.0 17 41930.5 18 43553.0 19 41165.5 20 36166.0 21 30906.0 22 27317.0 23 26991.0 24 30133.0 25 36468.5 26 46089.5 27 57282.0 28 70046.0 29 85705.5 30 102236.0 31 118875.0 32 136349.0 33 153586.0 34 170295.0 35 184757.5 36 199943.5 37 216416.0 38 231229.5 39 242817.5 40 252864.0 41 263167.5 42 270728.5 43 277187.0 44 283267.5 45 290152.5 46 295607.0 47 298348.0 48 299986.0 49 300009.5 50 300181.0 51 295651.0 52 284785.5 53 272170.5 54 258621.0 55 242525.0 56 224080.0 57 204148.0 58 182771.5 59 159611.5 60 133948.5 61 109609.0 62 87588.5 63 67895.0 64 51086.0 65 37662.5 66 28460.0 67 21768.0 68 16534.0 69 12000.5 70 8468.5 71 6032.0 72 4229.5 73 2906.0 74 1905.5 75 1262.0 76 847.5 77 519.0 78 322.0 79 227.0 80 155.5 81 102.0 82 77.0 83 52.0 84 31.0 85 20.0 86 14.5 87 11.5 88 10.0 89 9.5 90 9.0 91 7.5 92 5.5 93 3.0 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.6482144480830304E-4 7 0.0 8 0.0 9 1.373512040069192E-5 10-11 0.0063593607455203595 12-13 1.373512040069192E-5 14-15 0.006956838482950457 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 101.0 20-21 456.0 22-23 923.0 24-25 2137.0 26-27 2777.0 28-29 4729.0 30-31 11470.0 32-33 14752.0 34-35 20688.0 36-37 30050.0 38-39 35952.0 40-41 39207.0 42-43 47715.0 44-45 58090.0 46-47 56151.0 48-49 50293.0 50-51 43480.0 52-53 41022.0 54-55 45272.0 56-57 49590.0 58-59 31745.0 60-61 53925.0 62-63 52858.0 64-65 54806.0 66-67 59604.0 68-69 55966.0 70-71 55467.0 72-73 53410.0 74-75 54445.0 76-77 54444.0 78-79 58491.0 80-81 60672.0 82-83 58438.0 84-85 58349.0 86-87 62305.0 88-89 66307.0 90-91 69933.0 92-93 73791.0 94-95 88501.0 96-97 268990.0 98-99 453794.0 100-101 4879510.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.497022149066 #Duplication Level Percentage of deduplicated Percentage of total 1 89.65149866320277 76.64936166904808 2 7.338934243212648 12.549140470849816 3 1.7594296067340691 4.512779761699956 4 0.6107525181108141 2.0887008627407244 5 0.2567711655097404 1.0976585012413882 6 0.13071266713586574 0.6705326278367162 7 0.07838733284349925 0.4691318472628805 8 0.044599390257377865 0.30504920453358986 9 0.02994522588141558 0.2304204876397955 >10 0.09679246352601355 1.2688763650963124 >50 0.0018337942051969737 0.10767367717319891 >100 3.429293806442521E-4 0.05067452487753566 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.373512040069192E-5 0.0 0.0 0.0 3 0.0 1.373512040069192E-5 0.0 0.0 0.0 4 0.0 5.494048160276768E-5 0.0 1.373512040069192E-5 0.0 5 0.0 6.86756020034596E-5 0.0 1.373512040069192E-5 0.0 6 0.0 6.86756020034596E-5 0.0 1.373512040069192E-5 0.0 7 0.0 6.86756020034596E-5 0.0 1.373512040069192E-5 0.0 8 0.0 6.86756020034596E-5 0.0 1.373512040069192E-5 1.373512040069192E-5 9 0.0 1.6482144480830304E-4 0.0 1.373512040069192E-5 1.373512040069192E-5 10-11 0.0 1.6482144480830304E-4 0.0 2.747024080138384E-5 1.373512040069192E-5 12-13 0.0 1.6482144480830304E-4 0.0 5.494048160276768E-5 1.373512040069192E-5 14-15 0.0 2.3349704681176263E-4 0.0 5.494048160276768E-5 4.120536120207576E-5 16-17 0.0 2.4723216721245456E-4 0.0 5.494048160276768E-5 6.180804180311364E-5 18-19 0.0 2.678348478134925E-4 0.0 5.494048160276768E-5 6.86756020034596E-5 20-21 0.0 2.8843752841453034E-4 0.0 5.494048160276768E-5 8.241072240415152E-5 22-23 0.0 3.0217264881522227E-4 0.0 6.86756020034596E-5 9.614584280484345E-5 24-25 0.0 3.159077692159142E-4 0.0 7.554316220380555E-5 1.2361608360622728E-4 26-27 0.0 3.296428896166061E-4 0.0 1.1674852340588131E-4 1.373512040069192E-4 28-29 0.0 3.296428896166061E-4 0.0 2.8843752841453034E-4 1.373512040069192E-4 30-31 0.0 3.5711313041798993E-4 0.0 0.0012911013176650406 1.5108632440761114E-4 32-33 0.0 3.7084825081868186E-4 0.0 0.003667277146984743 1.6482144480830304E-4 34-35 0.0 4.395238528221415E-4 0.0 0.006778281917741463 1.6482144480830304E-4 36-37 0.0 5.28802135426639E-4 0.0 0.01191521694760024 1.8542412540934093E-4 38-39 0.0 5.494048160276768E-4 0.0 0.02778614857059976 2.1976192641107073E-4 40-41 0.0 6.318155384318283E-4 0.0 0.04461167106144735 2.1976192641107073E-4 42-43 0.0 6.592857792332121E-4 0.0 0.05444601726834277 2.266294866114167E-4 44-45 0.0 7.622991822384016E-4 0.0 0.0669106390319707 2.4036460701210862E-4 46-47 0.0 8.378423444422072E-4 0.0 0.08026804362164358 2.4723216721245456E-4 48-49 0.0 8.378423444422072E-4 0.0 0.09266398978326804 2.540997274128005E-4 50-51 0.0 9.202530668463586E-4 0.0 0.10481270377768004 2.609672876131465E-4 52-53 0.0 9.202530668463586E-4 0.0 0.13879339164899185 2.747024080138384E-4 54-55 0.0 9.339881872470506E-4 0.0 0.1802185147774787 2.8843752841453034E-4 56-57 0.0 9.614584280484345E-4 0.0 0.22251581805140946 2.8843752841453034E-4 58-59 0.0 9.683259882487805E-4 0.0 0.39104574536789927 2.9530508861487633E-4 60-61 0.0 9.820611086494722E-4 0.0 0.5376612880850853 3.0217264881522227E-4 62-63 0.0 0.0010163989096512022 0.0 0.543491846695179 3.1590776921591415E-4 64-65 0.0 0.0010988096320553537 0.0 0.5485326358822329 3.1590776921591415E-4 66-67 0.0 0.0010988096320553537 0.0 0.5535734250692868 3.1590776921591415E-4 68-69 0.0 0.0011125447524560454 0.0 0.5582502335657225 3.1590776921591415E-4 70-71 0.0 0.0011262798728567374 0.0 0.5623432994451286 3.1590776921591415E-4 72-73 0.0 0.0011262798728567374 0.0 0.5656328607810943 3.5711313041798993E-4 74-75 0.0 0.0011606176738584674 0.0 0.5687095277508493 3.5711313041798993E-4 76-77 0.0 0.001201823035060543 0.0 0.5715595652339929 3.5711313041798993E-4 78-79 0.0 0.001208690595260889 0.0 0.57329019040448 3.5711313041798993E-4 80-81 0.0 0.001208690595260889 0.0 0.5737915222991053 3.639806906183359E-4 82-83 0.0 0.001208690595260889 0.0 0.5740868273877202 3.983184916200657E-4 84-85 0.0 0.0012361608360622728 0.0 0.5742516488325284 3.983184916200657E-4 86-87 0.0 0.0012567635166633108 0.0 0.5743752649161347 3.983184916200657E-4 88 0.0 0.0012911013176650406 0.0 0.5743890000365354 3.983184916200657E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9685 0.0 50.81958 1 GTATCAA 17820 0.0 37.27847 1 TCAACGC 21495 0.0 30.506958 4 ATCAACG 21600 0.0 30.375294 3 CAACGCA 22020 0.0 29.83921 5 TATCAAC 22425 0.0 29.373224 2 AACGCAG 22610 0.0 29.060562 6 ACGCAGA 26205 0.0 25.073814 7 CGCAGAG 26565 0.0 24.701714 8 GTACATG 24285 0.0 22.860487 1 TACATGG 24635 0.0 22.413126 2 ACATGGG 24835 0.0 21.659447 3 GCAGAGT 30920 0.0 21.030088 9 GTGGTAT 4805 0.0 20.917393 1 GAGTACT 17185 0.0 20.134113 12-13 TGGTATC 4800 0.0 19.591167 2 CATGGGG 17955 0.0 19.0057 4 CAGAGTA 30235 0.0 18.808273 10-11 AGAGTAC 27925 0.0 18.687712 10-11 GTACTTT 19200 0.0 17.98787 14-15 >>END_MODULE