##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139117_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5556711 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.63470567391394 33.0 33.0 33.0 33.0 33.0 2 32.63969225680443 33.0 33.0 33.0 33.0 33.0 3 32.64613095768342 33.0 33.0 33.0 33.0 33.0 4 36.56467485892284 37.0 37.0 37.0 37.0 37.0 5 36.588657930923524 37.0 37.0 37.0 37.0 37.0 6 36.59184686768846 37.0 37.0 37.0 37.0 37.0 7 36.566933029268576 37.0 37.0 37.0 37.0 37.0 8 36.558442575113226 37.0 37.0 37.0 37.0 37.0 9 36.59190589541187 37.0 37.0 37.0 37.0 37.0 10-11 36.54378687320611 37.0 37.0 37.0 37.0 37.0 12-13 36.53256998609429 37.0 37.0 37.0 37.0 37.0 14-15 38.65009427339302 40.0 37.0 40.0 37.0 40.0 16-17 38.59017744489501 40.0 37.0 40.0 37.0 40.0 18-19 38.60318846886224 40.0 37.0 40.0 37.0 40.0 20-21 38.60062143504426 40.0 37.0 40.0 37.0 40.0 22-23 38.59797692394208 40.0 37.0 40.0 37.0 40.0 24-25 38.59685842544327 40.0 37.0 40.0 37.0 40.0 26-27 38.479947524448534 40.0 37.0 40.0 37.0 40.0 28-29 38.429087415907524 40.0 37.0 40.0 37.0 40.0 30-31 38.281797151697496 40.0 37.0 40.0 37.0 40.0 32-33 38.29777748883073 40.0 37.0 40.0 37.0 40.0 34-35 38.27687964458994 40.0 37.0 40.0 37.0 40.0 36-37 38.229613032869516 40.0 37.0 40.0 37.0 40.0 38-39 38.17989543834544 40.0 37.0 40.0 37.0 40.0 40-41 38.149283906154295 40.0 37.0 40.0 37.0 40.0 42-43 38.09809660671098 40.0 37.0 40.0 35.0 40.0 44-45 38.025050365672655 40.0 37.0 40.0 33.0 40.0 46-47 37.868505765064725 40.0 37.0 40.0 33.0 40.0 48-49 37.885379702188175 40.0 37.0 40.0 33.0 40.0 50-51 37.84946183033133 40.0 37.0 40.0 33.0 40.0 52-53 37.78713490606349 40.0 37.0 40.0 33.0 40.0 54-55 37.62714795716724 40.0 37.0 40.0 33.0 40.0 56-57 37.508362684329114 40.0 37.0 40.0 33.0 40.0 58-59 37.38428694216671 40.0 37.0 40.0 33.0 40.0 60-61 37.216433096869416 37.0 37.0 40.0 33.0 40.0 62-63 37.051040967728795 37.0 37.0 40.0 33.0 40.0 64-65 36.88171254381449 37.0 37.0 40.0 33.0 40.0 66-67 36.67643100969862 37.0 37.0 40.0 33.0 40.0 68-69 36.45637175469169 37.0 37.0 40.0 33.0 40.0 70-71 36.217886792370464 37.0 37.0 38.5 33.0 40.0 72-73 35.99096200406274 37.0 37.0 37.0 33.0 40.0 74-75 35.78168217591138 37.0 37.0 37.0 33.0 40.0 76-77 34.10309020830204 35.0 33.0 37.0 30.0 37.0 78-79 35.261787136687886 37.0 33.0 37.0 33.0 37.0 80-81 35.30090544920955 37.0 33.0 37.0 33.0 37.0 82-83 35.15264797843241 37.0 33.0 37.0 33.0 37.0 84-85 35.026897440873896 37.0 33.0 37.0 33.0 37.0 86-87 34.93707780836599 37.0 33.0 37.0 33.0 37.0 88-89 34.79936363291053 37.0 33.0 37.0 33.0 37.0 90-91 34.6618409147789 37.0 33.0 37.0 33.0 37.0 92-93 34.67123758446914 37.0 33.0 37.0 33.0 37.0 94-95 34.710880137815465 37.0 33.0 37.0 33.0 37.0 96-97 34.7140389106514 37.0 33.0 37.0 33.0 37.0 98-99 34.72404076635699 37.0 33.0 37.0 33.0 37.0 100 34.707572495078196 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 12.0 20 44.0 21 209.0 22 831.0 23 2183.0 24 5013.0 25 9778.0 26 16963.0 27 26698.0 28 39361.0 29 54611.0 30 73722.0 31 98787.0 32 130377.0 33 173643.0 34 241103.0 35 353171.0 36 629749.0 37 1602149.0 38 2046999.0 39 51306.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.79150220337174 19.92799337593767 14.16055288821031 24.119951532480275 2 14.67918702268302 20.595924459630886 41.96169280712997 22.76319571055612 3 18.496913012031758 25.771288087503564 29.999202765808768 25.732596134655918 4 12.533547272838193 17.873162739613417 38.48393411138352 31.109355876164873 5 13.580011629181362 37.598644233972216 35.36026977109301 13.461074365753412 6 30.384086223915475 37.439197220650044 18.658969045448778 13.517747509985703 7 26.936653714760407 32.23914290305902 22.772841704382323 18.05136167779825 8 24.39712988492653 36.99895495734797 20.858417866252175 17.74549729147332 9 25.58785684334795 16.837445178891826 20.936219453597545 36.63847852416268 10-11 24.504125132854355 26.585314341665544 28.604754563976297 20.3058059615038 12-13 25.30379042703154 24.06683524366671 28.69671598782661 21.932658341475143 14-15 22.326357799444775 25.49960630452682 26.258363216694487 25.915672679333912 16-17 22.050525931616743 28.597276338467125 26.956224644398457 22.395973085517674 18-19 22.07529777956781 27.751848170617478 28.570048001416666 21.602806048398055 20-21 22.78006755224609 26.883547961446848 28.550461182293883 21.78592330401318 22-23 22.477674497795437 26.940633187922252 28.34887932440181 22.2328129898805 24-25 22.316128936445782 27.099055977556237 28.40884267807696 22.175972407921023 26-27 22.279118761873036 27.196748026037397 28.365432921284583 22.15870029080498 28-29 22.169584749908108 27.199298481938623 28.452858514071117 22.178258254082152 30-31 22.43281705080788 27.05122792266651 28.369296921702396 22.14665810482321 32-33 22.132928039780637 27.26998770848295 28.343073709830826 22.254010541905586 34-35 22.38205311469116 27.255674618850854 28.315140642330284 22.0471316241277 36-37 22.272430929031138 27.291132253465594 28.252926317707132 22.18351049979614 38-39 22.18605834152164 27.254551542086986 28.272759895196963 22.28663022119441 40-41 22.463339769105477 27.11100546282085 28.275247793678027 22.150406974395644 42-43 22.304673232371115 27.186308294144148 28.108696435015034 22.400322038469707 44-45 22.306662574282324 27.33553422256408 27.945305653037302 22.4124975501163 46-47 22.458488771784705 27.265673071272573 27.716694092005532 22.559144064937193 48-49 22.335493438779373 27.49623032911865 27.61566851097179 22.552607721130183 50-51 22.293189131092184 27.616179360034575 27.50739700207453 22.583234506798707 52-53 22.352682734210877 27.46977823427126 27.483890116987602 22.69364891453026 54-55 22.397675471623728 27.256926116183582 27.6767926800214 22.668605732171283 56-57 22.361562672503673 27.19409016230019 27.655181779075917 22.78916538612022 58-59 22.189444251856447 27.066694110456314 27.78044170057229 22.963419937114953 60-61 22.399917720034388 27.32842839721724 27.832135105844653 22.43951877690372 62-63 22.02132245113043 27.504542490243804 27.861219941272157 22.6129151173536 64-65 21.895057001165938 27.695030785257657 27.619885629946832 22.790026583629572 66-67 21.9739908607549 28.04055974085745 27.275339933844894 22.710109464542754 68-69 22.060808457836597 28.026498217069452 27.130958631236535 22.781734693857416 70-71 22.069357272824043 27.622694366599315 27.128285785628943 23.179662574947695 72-73 22.195999806608572 27.30764223147229 27.096486474937652 23.399871486981485 74-75 22.277660870584292 27.33109522710246 27.224164833176957 23.16707906913629 76-77 22.543586798970722 27.2754308875734 26.769977255249245 23.41100505820664 78-79 22.66525230840071 27.29406398319058 26.44093489547531 23.5997488129334 80-81 22.573798655795837 27.569312959433635 26.574707729251774 23.282180655518754 82-83 22.543733917925874 27.41381705390754 26.63765564032557 23.404793387841014 84-85 22.585337945634215 27.709183130245552 26.601685342946745 23.10379358117349 86-87 22.884448587732475 27.637622782087934 26.661962417094802 22.81596621308479 88-89 22.746910185658432 27.69187472099478 26.875324832165553 22.685890261181235 90-91 22.739467467627243 27.469794712966777 26.75488964386888 23.035848175537097 92-93 22.67633889250264 27.131877432731766 27.020622715354154 23.17116095941144 94-95 22.173764816482937 27.45173472597549 27.464915855245287 22.909584602296288 96-97 22.30800182145965 27.383955870090443 27.542605733594694 22.765436574855215 98-99 23.506873671026764 29.2562030297497 27.87402137837628 19.362901920847257 100 22.384011123600615 30.414497066410235 21.58542496442657 25.616066845562578 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1021.0 1 926.5 2 1249.5 3 1760.0 4 2366.5 5 3889.0 6 5160.0 7 5938.5 8 6473.0 9 6462.5 10 6034.5 11 5510.5 12 6034.5 13 7935.5 14 12305.0 15 18650.5 16 23833.5 17 26840.5 18 27614.5 19 26210.5 20 23482.0 21 20542.0 22 18463.0 23 18588.5 24 21203.0 25 25976.0 26 32625.0 27 40587.5 28 49805.0 29 60860.0 30 73336.0 31 86200.0 32 99260.5 33 112572.0 34 125480.5 35 137659.5 36 151352.5 37 164857.0 38 176468.5 39 186669.0 40 196113.5 41 204613.5 42 210696.0 43 215755.5 44 220706.0 45 226602.5 46 230659.0 47 232527.0 48 236910.5 49 237606.5 50 233131.5 51 227466.5 52 218455.5 53 206172.5 54 192092.5 55 177793.5 56 163062.5 57 146745.0 58 129062.0 59 111014.0 60 92185.5 61 74378.0 62 59252.0 63 45697.5 64 33703.0 65 24758.0 66 18679.0 67 14225.0 68 10811.5 69 7812.0 70 5534.5 71 4008.0 72 2828.0 73 1840.0 74 1166.0 75 761.0 76 494.5 77 293.0 78 175.0 79 115.0 80 69.0 81 44.5 82 37.5 83 30.0 84 21.0 85 17.0 86 14.0 87 11.0 88 8.0 89 5.0 90 3.5 91 2.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 2.8794011421504555E-4 7 0.0 8 0.0 9 1.7996257138440347E-5 10-11 0.0061997105841927 12-13 3.5992514276880694E-5 14-15 0.006946555255437975 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 77.0 20-21 286.0 22-23 658.0 24-25 1654.0 26-27 2011.0 28-29 3149.0 30-31 8151.0 32-33 10212.0 34-35 14664.0 36-37 21498.0 38-39 16490.0 40-41 27484.0 42-43 32495.0 44-45 39245.0 46-47 39143.0 48-49 35463.0 50-51 19665.0 52-53 6643.0 54-55 6864.0 56-57 7398.0 58-59 22651.0 60-61 39357.0 62-63 38448.0 64-65 40193.0 66-67 43835.0 68-69 42186.0 70-71 42209.0 72-73 39682.0 74-75 41001.0 76-77 40485.0 78-79 44034.0 80-81 45501.0 82-83 44106.0 84-85 43964.0 86-87 46434.0 88-89 50158.0 90-91 52816.0 92-93 55116.0 94-95 66354.0 96-97 197616.0 98-99 379640.0 100-101 3847675.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.43552174004725 #Duplication Level Percentage of deduplicated Percentage of total 1 90.24118897134055 78.00044251180019 2 7.163427233217084 12.383491406999635 3 1.5330066444823824 3.9751868744038146 4 0.5064981499599455 1.751177274086263 5 0.21458184589349646 0.927374690287339 6 0.10986049293836113 0.5697509415447612 7 0.06451910730246974 0.3903719891323745 8 0.040036561662909524 0.27684648768089265 9 0.02910916262376737 0.22644590929210934 >10 0.09522756090606631 1.2916362510339845 >50 0.002028794399582958 0.11876133792953973 >100 4.525507667294222E-4 0.05726777348607895 >500 6.29245067304323E-5 0.03124655232299871 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.3988771415321045E-5 0.0 0.0 0.0 3 0.0 5.3988771415321045E-5 0.0 1.7996257138440347E-5 0.0 4 0.0 7.198502855376139E-5 0.0 3.5992514276880694E-5 0.0 5 0.0 7.198502855376139E-5 0.0 3.5992514276880694E-5 0.0 6 0.0 7.198502855376139E-5 0.0 3.5992514276880694E-5 0.0 7 0.0 7.198502855376139E-5 0.0 3.5992514276880694E-5 0.0 8 0.0 7.198502855376139E-5 0.0 3.5992514276880694E-5 1.7996257138440347E-5 9 0.0 1.0797754283064209E-4 0.0 7.198502855376139E-5 1.7996257138440347E-5 10-11 0.0 1.2597379996908244E-4 0.0 8.998128569220174E-5 1.7996257138440347E-5 12-13 0.0 1.2597379996908244E-4 0.0 9.897941426142192E-5 1.7996257138440347E-5 14-15 0.0 1.7996257138440348E-4 0.0 1.0797754283064209E-4 3.5992514276880694E-5 16-17 0.0 1.7996257138440348E-4 0.0 1.0797754283064209E-4 6.298689998454122E-5 18-19 0.0 1.8896069995362366E-4 0.0 1.3497192853830262E-4 1.0797754283064209E-4 20-21 0.0 1.9795882852284382E-4 0.0 1.5296818567674293E-4 1.0797754283064209E-4 22-23 0.0 1.9795882852284382E-4 0.0 2.06956957092064E-4 1.4397005710752278E-4 24-25 0.0 2.3395134279972452E-4 0.0 2.6994385707660524E-4 1.6196631424596311E-4 26-27 0.0 2.519475999381649E-4 0.0 4.049157856149078E-4 1.6196631424596311E-4 28-29 0.0 2.519475999381649E-4 0.0 0.0010437829140295402 1.6196631424596311E-4 30-31 0.0 2.699438570766052E-4 0.0 0.0032483244134884825 1.709644428151833E-4 32-33 0.0 2.8794011421504555E-4 0.0 0.008170300740851916 1.7996257138440348E-4 34-35 0.0 3.2393262849192623E-4 0.0 0.01499988032489003 1.7996257138440348E-4 36-37 0.0 3.5992514276880696E-4 0.0 0.027795219150321116 1.7996257138440348E-4 38-39 0.0 3.5992514276880696E-4 0.0 0.13459400713839534 1.7996257138440348E-4 40-41 0.0 4.4990642846100867E-4 0.0 0.24860029611041495 1.7996257138440348E-4 42-43 0.0 4.4990642846100867E-4 0.0 0.27735831501764263 1.7996257138440348E-4 44-45 0.0 5.128933284455499E-4 0.0 0.3158343127796281 1.7996257138440348E-4 46-47 0.0 5.758802284300911E-4 0.0 0.3567757977695799 2.06956957092064E-4 48-49 0.0 5.758802284300911E-4 0.0 0.39469391156027367 2.1595508566128418E-4 50-51 0.0 6.658615141222928E-4 0.0 0.4302995063086779 2.1595508566128418E-4 52-53 0.0 6.74859642691513E-4 0.0 0.7889649110777941 2.3395134279972452E-4 54-55 0.0 6.838577712607332E-4 0.0 1.2718494807449945 2.519475999381649E-4 56-57 0.0 6.838577712607332E-4 0.0 1.8056364637282738 2.519475999381649E-4 58-59 0.0 7.198502855376139E-4 0.0 2.3716097526036535 2.519475999381649E-4 60-61 0.0 7.558427998144945E-4 0.0 2.5310655889788043 2.519475999381649E-4 62-63 0.0 7.738390569529349E-4 0.0 2.5381111236485037 2.8794011421504555E-4 64-65 0.0 8.81816599783577E-4 0.0 2.5439239147042194 2.8794011421504555E-4 66-67 0.0 8.81816599783577E-4 0.0 2.547784111860415 2.8794011421504555E-4 68-69 0.0 9.268072426296778E-4 0.0 2.5521572023450565 2.8794011421504555E-4 70-71 0.0 9.717978854757788E-4 0.0 2.556314337744036 2.8794011421504555E-4 72-73 0.0 9.89794142614219E-4 0.0 2.5594816790004016 3.059363713534859E-4 74-75 0.0 0.0010077903997526595 0.0 2.5619741606140756 3.059363713534859E-4 76-77 0.0 0.00103478478546032 0.0 2.5644306497134726 3.059363713534859E-4 78-79 0.0 0.0010617791711679805 0.0 2.566050312855932 3.059363713534859E-4 80-81 0.0 0.0010617791711679805 0.0 2.5665452099272392 3.149344999227061E-4 82-83 0.0 0.0010617791711679805 0.0 2.567067101384254 3.2393262849192623E-4 84-85 0.0 0.0010707772997372005 0.0 2.5672470639556386 3.2393262849192623E-4 86-87 0.0 0.0010977716854448612 0.0 2.5673460433699 3.2393262849192623E-4 88 0.0 0.0011157679425833015 0.0 2.5673460433699 3.2393262849192623E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6890 0.0 47.28483 1 GTATCAA 12040 0.0 36.793217 1 TCAACGC 13815 0.0 31.49895 4 ATCAACG 14035 0.0 31.033567 3 CAACGCA 14355 0.0 30.345867 5 AACGCAG 14695 0.0 29.61399 6 TATCAAC 14975 0.0 29.260763 2 ACGCAGA 16950 0.0 25.699764 7 ATCTCGT 5975 0.0 25.335442 94 CGCAGAG 17230 0.0 25.33312 8 TATCTCG 6590 0.0 23.928186 94 GTACATG 16940 0.0 22.613901 1 TACATGG 16875 0.0 22.130888 2 GCAGAGT 20530 0.0 21.264893 9 ACATGGG 17105 0.0 21.117462 3 GTGGTAT 3775 0.0 20.61996 1 TGGTATC 3640 0.0 19.822906 2 GAGTACT 11500 0.0 19.606215 12-13 CGCTATC 9480 0.0 19.228468 94 CATGGGG 12780 0.0 19.129555 4 >>END_MODULE