##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139114_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10014471 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.617527575844996 33.0 33.0 33.0 33.0 33.0 2 32.62292706224822 33.0 33.0 33.0 33.0 33.0 3 32.628301484921174 33.0 33.0 33.0 33.0 33.0 4 36.5446894798537 37.0 37.0 37.0 37.0 37.0 5 36.56988791519792 37.0 37.0 37.0 37.0 37.0 6 36.576240322629126 37.0 37.0 37.0 37.0 37.0 7 36.55153447446201 37.0 37.0 37.0 37.0 37.0 8 36.54327542613085 37.0 37.0 37.0 37.0 37.0 9 36.5767232238228 37.0 37.0 37.0 37.0 37.0 10-11 36.528745302672505 37.0 37.0 37.0 37.0 37.0 12-13 36.51429111932123 37.0 37.0 37.0 37.0 37.0 14-15 38.612268785840016 40.0 37.0 40.0 37.0 40.0 16-17 38.55382665744401 40.0 37.0 40.0 37.0 40.0 18-19 38.56764161581775 40.0 37.0 40.0 37.0 40.0 20-21 38.561342201060256 40.0 37.0 40.0 37.0 40.0 22-23 38.55782434332586 40.0 37.0 40.0 37.0 40.0 24-25 38.555275175399345 40.0 37.0 40.0 37.0 40.0 26-27 38.435624296965 40.0 37.0 40.0 37.0 40.0 28-29 38.38696049371188 40.0 37.0 40.0 37.0 40.0 30-31 38.23643517230312 40.0 37.0 40.0 37.0 40.0 32-33 38.25395164779496 40.0 37.0 40.0 37.0 40.0 34-35 38.22941337316894 40.0 37.0 40.0 37.0 40.0 36-37 38.18526767797994 40.0 37.0 40.0 37.0 40.0 38-39 38.13328881052423 40.0 37.0 40.0 37.0 40.0 40-41 38.10848108195076 40.0 37.0 40.0 37.0 40.0 42-43 38.062175418399136 40.0 37.0 40.0 33.0 40.0 44-45 37.988864754329505 40.0 37.0 40.0 33.0 40.0 46-47 37.83869636423175 40.0 37.0 40.0 33.0 40.0 48-49 37.85593334564483 40.0 37.0 40.0 33.0 40.0 50-51 37.818691170038505 40.0 37.0 40.0 33.0 40.0 52-53 37.755199749930284 40.0 37.0 40.0 33.0 40.0 54-55 37.585759592455894 40.0 37.0 40.0 33.0 40.0 56-57 37.46887324505768 40.0 37.0 40.0 33.0 40.0 58-59 37.337850470194155 38.5 37.0 40.0 33.0 40.0 60-61 37.16781028408877 37.0 37.0 40.0 33.0 40.0 62-63 36.99657470575812 37.0 37.0 40.0 33.0 40.0 64-65 36.82047577689772 37.0 37.0 40.0 33.0 40.0 66-67 36.61285944066881 37.0 37.0 40.0 33.0 40.0 68-69 36.40019062165902 37.0 37.0 40.0 33.0 40.0 70-71 36.16262638235467 37.0 37.0 38.5 33.0 40.0 72-73 35.93650343794389 37.0 37.0 37.0 33.0 40.0 74-75 35.74178923702212 37.0 35.0 37.0 33.0 40.0 76-77 34.05852471593168 35.0 33.0 37.0 30.0 37.0 78-79 35.24315707902633 37.0 33.0 37.0 33.0 37.0 80-81 35.30299498874764 37.0 33.0 37.0 33.0 37.0 82-83 35.16493139411447 37.0 33.0 37.0 33.0 37.0 84-85 35.03707131582499 37.0 33.0 37.0 33.0 37.0 86-87 34.951168974746935 37.0 33.0 37.0 33.0 37.0 88-89 34.81745023584163 37.0 33.0 37.0 33.0 37.0 90-91 34.673646161051025 37.0 33.0 37.0 33.0 37.0 92-93 34.671406032931586 37.0 33.0 37.0 33.0 37.0 94-95 34.73300209617213 37.0 33.0 37.0 33.0 37.0 96-97 34.739694989214144 37.0 33.0 37.0 33.0 37.0 98-99 34.7386411178554 37.0 33.0 37.0 33.0 37.0 100 34.72714578685277 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 15.0 20 67.0 21 371.0 22 1407.0 23 3926.0 24 8759.0 25 17498.0 26 30364.0 27 47575.0 28 70469.0 29 98048.0 30 133448.0 31 177617.0 32 236191.0 33 318039.0 34 441700.0 35 648399.0 36 1154591.0 37 2900798.0 38 3624377.0 39 100810.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.668491525912856 19.93054850326093 14.296561445931594 24.104398524894624 2 14.701425567061904 20.641230075957083 41.792532026903864 22.864812330077143 3 18.36825929197858 25.819306881012487 30.101789700124947 25.710644126883984 4 12.686111927429817 17.895523388105072 38.155684908369096 31.262679776096014 5 13.726835895775224 37.50121199612042 35.15331963116174 13.618632476942615 6 30.528996441443184 37.19218613338142 18.624152512373865 13.654664912801529 7 26.965648010763626 32.28305319372337 22.709936450961813 18.0413623445512 8 24.62304798725764 36.752235839516636 20.824684598916907 17.800031574308818 9 25.74472995023501 16.815240029201746 20.817648943743297 36.62238107681995 10-11 24.640318599456602 26.504121426098067 28.470372592298 20.385187382147336 12-13 25.430051615829957 23.94854983038787 28.583554600736843 22.03784395304533 14-15 22.484929228339343 25.335333781916354 26.12782379115764 26.05191319858666 16-17 22.208836592566897 28.4422462254871 26.813672933897358 22.53524424804865 18-19 22.232487367530446 27.574576829869496 28.463879919368683 21.72905588323138 20-21 23.03124889532328 26.73364094856106 28.332104416889464 21.903005739226195 22-23 22.764871608034944 26.755255424020817 28.162965018698937 22.316907949245298 24-25 22.52054403198649 26.92608243682222 28.264392933187604 22.28898059800369 26-27 22.475957737712626 27.04876712514905 28.241624617342282 22.23365051979604 28-29 22.40664902022677 27.0150905647787 28.271684740573942 22.306575674420586 30-31 22.72908527554899 26.952076296332162 28.073407968729803 22.24543045938904 32-33 22.443755733861344 27.00011890504538 28.157636722888764 22.398488638204515 34-35 22.499044579110105 27.15185140731865 28.203020285054404 22.146083728516842 36-37 22.619121812695756 27.050721731217813 27.99090723913771 22.339249216948723 38-39 22.394624483456326 27.08807761827329 28.106662560436803 22.410635337833583 40-41 22.635490136459964 26.94167402032613 28.045720506108214 22.377115337105696 42-43 22.565610931079902 27.04601417459059 27.85996366245732 22.528411231872187 44-45 22.581988301729204 27.200217500250883 27.65378308413664 22.564011113883268 46-47 22.797045380091415 27.14406502035786 27.33581891643137 22.723070683119353 48-49 22.638035308195516 27.274161456169427 27.32384805063714 22.76395518499792 50-51 22.618011991678813 27.39980728469756 27.291978358830654 22.690202364792974 52-53 22.78362063564344 27.30937931955843 27.271670243697027 22.635329801101097 54-55 22.69556095390999 27.253400091152074 27.19287460019307 22.85816435474487 56-57 22.77437552004729 27.425211579793274 27.085448250705678 22.71496464945376 58-59 22.676795790865704 27.505466062376687 27.20476470663672 22.612973440120886 60-61 22.797515092417086 27.530677871393983 27.080836191123137 22.590970845065794 62-63 22.70296146450595 27.658078046079478 27.036291613070972 22.6026688763436 64-65 22.736958233180673 27.533043278088304 26.99557945471589 22.734419034015136 66-67 22.793908717517482 27.469605928493774 26.942896909717163 22.793588444271585 68-69 22.73654247517363 27.42963200956639 27.03153340178025 22.802292113479737 70-71 22.752367385695287 27.26904391080749 27.086185431496407 22.892403272000816 72-73 22.79176475809616 27.282786748294434 27.01958977539436 22.905858718215043 74-75 22.663358142414474 27.42279705848763 26.99607822410271 22.917766574995188 76-77 22.837280686222226 27.336036139684026 26.929810605640164 22.89687256845358 78-79 22.767837747892 27.353869706730343 26.907989353968688 22.97030319140897 80-81 22.788785878645086 27.402005064614897 26.925374860270594 22.883834196469422 82-83 22.799870403240234 27.364951935961933 26.965055608533145 22.870122052264687 84-85 22.872268878727827 27.358107348611803 26.931479504260814 22.838144268399553 86-87 22.777556736057456 27.355741597918442 27.023774008425377 22.84292765759872 88-89 22.818162983378052 27.307677368120764 26.959419409210305 22.914740239290882 90-91 22.862648047292364 27.35254951480713 26.94035511666886 22.844447321231648 92-93 22.800819384539416 27.317071239273133 27.03339932057705 22.8487100556104 94-95 22.72614147032319 27.37671584706738 27.022859496839736 22.8742831857697 96-97 22.842604955654284 27.465682870721388 27.05149197858283 22.640220195041497 98-99 23.983671032723123 29.392720068801697 27.21821438088191 19.405394517593265 100 22.858607605152194 30.362170709493093 21.03118687645674 25.748034808897973 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1787.0 1 1629.0 2 2228.0 3 3158.0 4 4220.0 5 7014.0 6 9499.0 7 11021.5 8 11793.5 9 11496.0 10 10616.0 11 9746.5 12 10581.5 13 13979.0 14 22126.5 15 33689.5 16 43651.0 17 50073.5 18 51898.5 19 49171.5 20 43994.0 21 38434.0 22 34680.0 23 34610.0 24 38875.0 25 47316.5 26 59330.5 27 74094.5 28 91664.0 29 112510.5 30 134837.5 31 157904.5 32 182296.0 33 206604.0 34 231187.5 35 253904.0 36 277642.5 37 301798.0 38 322944.0 39 340367.0 40 356008.0 41 371188.0 42 381743.5 43 391375.0 44 400894.0 45 411885.0 46 422649.0 47 430778.5 48 432418.5 49 425961.0 50 419028.5 51 409084.0 52 394312.0 53 375493.0 54 354720.5 55 333282.0 56 309330.0 57 281702.0 58 250557.0 59 217589.0 60 184048.0 61 151810.5 62 122411.0 63 96347.5 64 72998.0 65 54420.5 66 40930.5 67 31349.5 68 24034.0 69 17603.0 70 12676.5 71 9231.0 72 6552.5 73 4481.0 74 3064.0 75 2062.5 76 1343.0 77 830.0 78 509.0 79 329.0 80 225.5 81 150.5 82 108.0 83 83.0 84 65.5 85 50.5 86 38.0 87 24.0 88 11.0 89 3.5 90 1.5 91 1.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.7973989839303544E-4 7 0.0 8 0.0 9 1.9971099821448385E-5 10-11 0.006425701367551016 12-13 4.493497459825886E-5 14-15 0.007159639285989245 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 140.0 20-21 533.0 22-23 1235.0 24-25 2926.0 26-27 3684.0 28-29 6255.0 30-31 16389.0 32-33 20579.0 34-35 28781.0 36-37 43113.0 38-39 53384.0 40-41 55739.0 42-43 66610.0 44-45 80054.0 46-47 77184.0 48-49 70297.0 50-51 63362.0 52-53 62838.0 54-55 68437.0 56-57 73428.0 58-59 73535.0 60-61 74582.0 62-63 73443.0 64-65 77501.0 66-67 83386.0 68-69 78056.0 70-71 77188.0 72-73 73499.0 74-75 76118.0 76-77 76000.0 78-79 81572.0 80-81 83779.0 82-83 81571.0 84-85 81454.0 86-87 85454.0 88-89 92555.0 90-91 96238.0 92-93 99159.0 94-95 119977.0 96-97 336542.0 98-99 619027.0 100-101 6678867.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.5094854640569 #Duplication Level Percentage of deduplicated Percentage of total 1 89.67337139780722 75.78250476655964 2 7.191823472722353 12.155546024561858 3 1.7213285178377928 4.364057620712386 4 0.6277741375012469 2.1221147739148987 5 0.29079137463504295 1.228731472389664 6 0.1614875780674424 0.8188339278789765 7 0.08608459199355174 0.5092475203030831 8 0.056016823888706734 0.3787162371332237 9 0.04001707603265006 0.3043640254765769 >10 0.14613291011322174 1.9709018425405396 >50 0.004034475698395864 0.22408474293403266 >100 0.001137643702425747 0.14089704559510755 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.9956649732172574E-5 0.0 0.0 0.0 3 0.0 3.994219964289676E-5 0.0 0.0 0.0 4 0.0 5.991329946434515E-5 0.0 0.0 9.98554991072419E-6 5 0.0 7.988439928579353E-5 0.0 0.0 9.98554991072419E-6 6 3.994219964289676E-5 7.988439928579353E-5 0.0 9.98554991072419E-6 1.997109982144838E-5 7 3.994219964289676E-5 8.986994919651772E-5 0.0 9.98554991072419E-6 1.997109982144838E-5 8 3.994219964289676E-5 9.985549910724192E-5 0.0 9.98554991072419E-6 1.997109982144838E-5 9 4.992774955362096E-5 1.098410490179661E-4 0.0 9.98554991072419E-6 1.997109982144838E-5 10-11 4.992774955362096E-5 1.098410490179661E-4 0.0 9.98554991072419E-6 2.4963874776810476E-5 12-13 6.989884937506934E-5 1.198265989286903E-4 0.0 9.98554991072419E-6 3.994219964289676E-5 14-15 6.989884937506934E-5 1.3979769875013869E-4 0.0 9.98554991072419E-6 6.989884937506934E-5 16-17 1.098410490179661E-4 1.4978324866086285E-4 0.0 9.98554991072419E-6 1.098410490179661E-4 18-19 1.198265989286903E-4 1.4978324866086285E-4 0.0 1.997109982144838E-5 1.2481937388405238E-4 20-21 1.298121488394145E-4 1.7973989839303544E-4 0.0 2.9956649732172574E-5 1.348049237947766E-4 22-23 1.298121488394145E-4 1.9971099821448383E-4 0.0 4.493497459825886E-5 1.6975434848231125E-4 24-25 1.298121488394145E-4 2.1468932308057011E-4 0.0 5.991329946434515E-5 2.0470377316984592E-4 26-27 1.3979769875013869E-4 2.296676479466564E-4 0.0 6.490607441970725E-5 2.09696548125208E-4 28-29 1.3979769875013869E-4 2.296676479466564E-4 0.0 1.5976879857158708E-4 2.09696548125208E-4 30-31 1.3979769875013869E-4 2.4963874776810476E-4 0.0 5.442124701344683E-4 2.09696548125208E-4 32-33 1.3979769875013869E-4 2.4963874776810476E-4 0.0 0.0014728686118318183 2.09696548125208E-4 34-35 1.3979769875013869E-4 2.7460262254491523E-4 0.0 0.0030006577481726197 2.1468932308057011E-4 36-37 1.3979769875013869E-4 3.0455927227708785E-4 0.0 0.00490789778112094 2.296676479466564E-4 38-39 1.3979769875013869E-4 3.445014719199846E-4 0.0 0.008168179826972388 2.446459728127427E-4 40-41 1.5477602361622494E-4 3.794508966075193E-4 0.0 0.01179293444456527 2.4963874776810476E-4 42-43 1.5976879857158705E-4 3.8444367156288136E-4 0.0 0.015312840788095548 2.7460262254491523E-4 44-45 1.6476157352694916E-4 4.443569710272265E-4 0.0 0.01931704630229595 2.945737223663636E-4 46-47 1.6975434848231125E-4 4.992774955362095E-4 0.0 0.023735652137791403 3.14544822187812E-4 48-49 1.6975434848231125E-4 5.042702704915717E-4 0.0 0.028598614944314083 3.445014719199846E-4 50-51 1.8972544830375964E-4 5.492052450898305E-4 0.0 0.0331020979540507 3.4949424687534666E-4 52-53 2.196820980359322E-4 5.492052450898305E-4 0.0 0.037675479813162376 3.844436715628813E-4 54-55 2.196820980359322E-4 5.741691198666409E-4 0.0 0.04239864492093491 4.343714211165023E-4 56-57 2.196820980359322E-4 5.791618948220031E-4 0.0 0.04718671610312716 4.543425209379507E-4 58-59 2.196820980359322E-4 5.891474447327273E-4 0.0 0.0523192887572394 4.593352958933128E-4 60-61 2.2467487299129428E-4 6.041257695988136E-4 0.0 0.05746184696126236 4.593352958933128E-4 62-63 2.296676479466564E-4 6.340824193309862E-4 0.0 0.062489571341311986 4.892919456254853E-4 64-65 2.296676479466564E-4 7.089740436614176E-4 0.0 0.06723270754890598 4.992774955362095E-4 66-67 2.396531978573806E-4 7.339379184382281E-4 0.0 0.07259994062592023 5.092630454469338E-4 68-69 2.396531978573806E-4 7.489162433043143E-4 0.0 0.07801210867753275 5.19248595357658E-4 70-71 2.396531978573806E-4 7.589017932150386E-4 0.0 0.08271530268548384 5.292341452683821E-4 72-73 2.4963874776810476E-4 7.589017932150386E-4 0.0 0.08606046190557644 5.891474447327273E-4 74-75 2.4963874776810476E-4 7.638945681704007E-4 0.0 0.08887139420544529 5.891474447327273E-4 76-77 2.4963874776810476E-4 7.938512179025732E-4 0.0 0.09164238430567126 5.941402196880893E-4 78-79 2.4963874776810476E-4 8.088295427686595E-4 0.0 0.09340483386491408 5.991329946434514E-4 80-81 2.4963874776810476E-4 8.088295427686595E-4 0.0 0.09395403911000391 6.240968694202619E-4 82-83 2.4963874776810476E-4 8.088295427686595E-4 0.0 0.0945082371300491 6.890029438399692E-4 84-85 2.4963874776810476E-4 8.088295427686595E-4 0.0 0.09473790477799576 6.890029438399692E-4 86-87 2.4963874776810476E-4 8.188150926793837E-4 0.0 0.0947978180774601 6.890029438399692E-4 88 2.4963874776810476E-4 8.687428422330046E-4 0.0 0.09480281085241547 6.890029438399692E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12370 0.0 47.889175 1 GTATCAA 22125 0.0 37.56994 1 TCAACGC 26430 0.0 30.706758 4 ATCAACG 26800 0.0 30.294918 3 CAACGCA 27295 0.0 29.702602 5 TATCAAC 28230 0.0 28.942926 2 AACGCAG 28050 0.0 28.90312 6 CTTATAC 6290 0.0 25.952291 1 ACGCAGA 32225 0.0 25.18516 7 CGCAGAG 32850 0.0 24.666876 8 GTACATG 30640 0.0 22.43231 1 TACATGG 30890 0.0 21.722305 2 TATACAC 9860 0.0 20.956125 3 ACATGGG 31140 0.0 20.899546 3 GCAGAGT 39185 0.0 20.813595 9 GAGTACT 21055 0.0 19.916014 12-13 GTGGTAT 6410 0.0 19.770004 1 TGGTATC 6110 0.0 18.912714 2 CAGAGTA 37415 0.0 18.644428 10-11 AGAGTAC 34370 0.0 18.59602 10-11 >>END_MODULE