##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139113_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8948409 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.621204506857026 33.0 33.0 33.0 33.0 33.0 2 32.62909205424115 33.0 33.0 33.0 33.0 33.0 3 32.63429119075804 33.0 33.0 33.0 33.0 33.0 4 36.552586945902895 37.0 37.0 37.0 37.0 37.0 5 36.57625282885483 37.0 37.0 37.0 37.0 37.0 6 36.58039032413471 37.0 37.0 37.0 37.0 37.0 7 36.555180703072466 37.0 37.0 37.0 37.0 37.0 8 36.54705534805126 37.0 37.0 37.0 37.0 37.0 9 36.58184544313967 37.0 37.0 37.0 37.0 37.0 10-11 36.53388585613375 37.0 37.0 37.0 37.0 37.0 12-13 36.5209158410171 37.0 37.0 37.0 37.0 37.0 14-15 38.62199554133031 40.0 37.0 40.0 37.0 40.0 16-17 38.561997445579436 40.0 37.0 40.0 37.0 40.0 18-19 38.57707699770987 40.0 37.0 40.0 37.0 40.0 20-21 38.573109476455784 40.0 37.0 40.0 37.0 40.0 22-23 38.56861805618426 40.0 37.0 40.0 37.0 40.0 24-25 38.565014513958815 40.0 37.0 40.0 37.0 40.0 26-27 38.442884178204835 40.0 37.0 40.0 37.0 40.0 28-29 38.3950419286818 40.0 37.0 40.0 37.0 40.0 30-31 38.24064915566396 40.0 37.0 40.0 37.0 40.0 32-33 38.26378249272727 40.0 37.0 40.0 37.0 40.0 34-35 38.24170379350963 40.0 37.0 40.0 37.0 40.0 36-37 38.19373655427217 40.0 37.0 40.0 37.0 40.0 38-39 38.13951887750372 40.0 37.0 40.0 37.0 40.0 40-41 38.11649267538028 40.0 37.0 40.0 37.0 40.0 42-43 38.07209352573959 40.0 37.0 40.0 33.0 40.0 44-45 38.000473802073685 40.0 37.0 40.0 33.0 40.0 46-47 37.85440561725129 40.0 37.0 40.0 33.0 40.0 48-49 37.87440402228759 40.0 37.0 40.0 33.0 40.0 50-51 37.8299392335491 40.0 37.0 40.0 33.0 40.0 52-53 37.77127684066515 40.0 37.0 40.0 33.0 40.0 54-55 37.60844515409052 40.0 37.0 40.0 33.0 40.0 56-57 37.49291650392838 40.0 37.0 40.0 33.0 40.0 58-59 37.370375672796406 40.0 37.0 40.0 33.0 40.0 60-61 37.204810520542665 37.0 37.0 40.0 33.0 40.0 62-63 37.03955961568981 37.0 37.0 40.0 33.0 40.0 64-65 36.87079726630263 37.0 37.0 40.0 33.0 40.0 66-67 36.66974960847509 37.0 37.0 40.0 33.0 40.0 68-69 36.45970220274363 37.0 37.0 40.0 33.0 40.0 70-71 36.225807880948196 37.0 37.0 38.5 33.0 40.0 72-73 35.99948359806798 37.0 37.0 37.0 33.0 40.0 74-75 35.80344794546482 37.0 37.0 37.0 33.0 40.0 76-77 34.12956022935558 35.0 33.0 37.0 30.0 37.0 78-79 35.303590473451855 37.0 33.0 37.0 33.0 37.0 80-81 35.35652557898666 37.0 33.0 37.0 33.0 37.0 82-83 35.212321385525385 37.0 33.0 37.0 33.0 37.0 84-85 35.07934574645356 37.0 33.0 37.0 33.0 37.0 86-87 34.99316387958252 37.0 33.0 37.0 33.0 37.0 88-89 34.85431692538505 37.0 33.0 37.0 33.0 37.0 90-91 34.70769847365161 37.0 33.0 37.0 33.0 37.0 92-93 34.70583474689573 37.0 33.0 37.0 33.0 37.0 94-95 34.76260099984067 37.0 33.0 37.0 33.0 37.0 96-97 34.76547438720247 37.0 33.0 37.0 33.0 37.0 98-99 34.76663401090707 37.0 33.0 37.0 33.0 37.0 100 34.756643459169524 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 5.0 19 10.0 20 76.0 21 356.0 22 1214.0 23 3504.0 24 7983.0 25 15511.0 26 26883.0 27 42134.0 28 62319.0 29 86905.0 30 117475.0 31 156896.0 32 209052.0 33 280842.0 34 389299.0 35 572823.0 36 1017300.0 37 2560448.0 38 3303614.0 39 93760.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.22437854595158 20.200820056392146 14.437069204145676 24.1377321935106 2 14.486496985106514 20.554815945493772 42.19068439987488 22.76800266952483 3 18.266990254915708 25.875650073661138 30.28292515462805 25.574434516795108 4 12.488231148129238 18.035731267982946 38.42250616841497 31.05353141547285 5 13.510457557315497 37.554374190987474 35.45430254696673 13.480865704730306 6 30.16307624465672 37.595965576381275 18.62229757282622 13.618660606135785 7 26.66353314874186 32.41074474803286 22.808155058625506 18.117567044599774 8 24.28384755323544 37.151296951223394 20.86128383269026 17.703571662850905 9 25.37210537832101 16.95077313210867 21.0246271794105 36.652494310159824 10-11 24.409224948819947 26.670289149694753 28.587906643650264 20.332579257835036 12-13 25.194847573394362 24.052923398080438 28.729466312711594 22.022762715813602 14-15 22.32060369995046 25.525483993452035 26.210522168941104 25.943390137656397 16-17 21.944068493069548 28.740081057984725 26.94187871832859 22.37397173061714 18-19 22.00045840551097 27.782150994662853 28.63630842086007 21.581082178966117 20-21 22.750231847877174 26.912223234652405 28.512972389525892 21.824572527944536 22-23 22.48248922737458 26.976293602163317 28.373511962223013 22.16770520823909 24-25 22.363890111780524 27.13829999911136 28.39830469494072 22.099505194167403 26-27 22.327544640873075 27.26570581956039 28.379014240524462 22.02773529904207 28-29 22.128143462282424 27.193816680509197 28.443922869348555 22.234116987859824 30-31 22.333591468822654 27.09421814753129 28.48132650482402 22.090863878822038 32-33 21.975945619303165 27.118360774219013 28.64464574021706 22.26104786626076 34-35 22.137360823938135 27.22352807758877 28.455702692895617 22.183408405577477 36-37 22.24410512136523 27.23047412196347 28.377620690024592 22.147800066646706 38-39 22.194150897249074 27.24028709840129 28.368697329557918 22.19686467479172 40-41 22.30559469119281 27.208952818458048 28.335386945475587 22.150065544873556 42-43 22.300837000588196 27.273671272454536 28.18725097318453 22.238240753772736 44-45 22.360881608695436 27.418306360205058 27.999201067014255 22.22161096408525 46-47 22.50712219201686 27.308236362472133 27.562399948773773 22.62224149673724 48-49 22.371344501258676 27.48010668918866 27.55369596257205 22.59485284698061 50-51 22.326176891244774 27.55435136657111 27.628972435427624 22.490499306756494 52-53 22.41929791037258 27.604580604314176 27.593023700757367 22.38309778455587 54-55 22.37520075798593 27.539156683724066 27.511207420745055 22.574435137544953 56-57 22.572693759925002 27.648496775374333 27.294956754317774 22.48385271038289 58-59 22.32505908135302 27.848082994181212 27.52658737017846 22.3002705542873 60-61 22.57395163666288 27.899258241427464 27.257551196625364 22.26923892528429 62-63 22.449999451695728 28.0368544731685 27.1855950492275 22.327551025908278 64-65 22.424700840242558 27.868433259679815 27.200346098020407 22.50651980205723 66-67 22.50890293645204 27.793385013193717 27.144642929455593 22.553069120898652 68-69 22.439499476743283 27.68171932810221 27.29025097220818 22.58853022294633 70-71 22.441161486733748 27.53146459244526 27.33188516738175 22.695488753439243 72-73 22.54161944228535 27.608755601159356 27.174962995868963 22.674661960686336 74-75 22.445853589816203 27.676061022386474 27.236010562883777 22.64207482491355 76-77 22.555206398822236 27.58559437144933 27.17777834022507 22.68142088950336 78-79 22.442917342425712 27.572425652316703 27.194856299253704 22.78980070600388 80-81 22.50384559369729 27.632879539064575 27.192881443312466 22.670393423925667 82-83 22.48474844382427 27.64753284996198 27.256387855167596 22.61133085104616 84-85 22.597393120572075 27.618886198812408 27.17302701509759 22.61069366551792 86-87 22.47549431293871 27.624401657559766 27.249632786228016 22.650471243273508 88-89 22.58649422589428 27.540121707776155 27.175104562057665 22.6982795042719 90-91 22.572551282913686 27.633200758143172 27.176086269593043 22.6181616893501 92-93 22.606480165803546 27.54626110340138 27.27413864836813 22.573120082426936 94-95 22.425204778867798 27.638038976350142 27.295115188679077 22.641641056102983 96-97 22.471724664677577 27.694780950031202 27.405699018496716 22.427795366794513 98-99 23.67244437170055 29.60916656170661 27.482015066936818 19.236373999656028 100 22.59426333700255 30.564138165808274 21.265077774041803 25.57652072314737 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1587.0 1 1459.5 2 2033.0 3 2866.5 4 3926.0 5 6689.0 6 8960.5 7 10146.5 8 10653.5 9 10135.5 10 9102.5 11 8239.5 12 9107.5 13 12459.5 14 20276.5 15 31116.5 16 40330.0 17 46299.5 18 48215.0 19 46151.0 20 41798.5 21 36726.5 22 33549.5 23 34434.5 24 39568.5 25 48681.0 26 61017.5 27 75343.0 28 91003.5 29 110602.5 30 131124.0 31 151689.5 32 174073.5 33 195905.0 34 217501.5 35 237985.5 36 259678.5 37 281442.0 38 297409.5 39 306567.0 40 317590.5 41 330709.5 42 340855.0 43 351878.0 44 363441.0 45 370700.5 46 373773.0 47 377267.0 48 387052.0 49 390035.5 50 379231.5 51 366599.0 52 352567.5 53 332522.5 54 308672.5 55 284565.5 56 261292.5 57 237330.0 58 210808.0 59 182347.0 60 151228.0 61 121718.5 62 96130.0 63 74256.0 64 55593.5 65 41395.5 66 31568.0 67 24419.5 68 18747.5 69 13923.0 70 10243.5 71 7427.0 72 5255.5 73 3658.0 74 2540.0 75 1731.5 76 1119.0 77 668.5 78 417.5 79 264.0 80 192.5 81 148.0 82 105.0 83 74.0 84 55.0 85 44.0 86 35.0 87 26.5 88 22.5 89 18.5 90 14.0 91 8.0 92 4.0 93 2.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 2.0115307648544003E-4 7 0.0 8 0.0 9 3.352551274757334E-5 10-11 0.006559825327608517 12-13 4.470068366343112E-5 14-15 0.006554237742150588 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 113.0 20-21 490.0 22-23 1130.0 24-25 1988.0 26-27 3044.0 28-29 5752.0 30-31 14154.0 32-33 18655.0 34-35 26430.0 36-37 39320.0 38-39 48406.0 40-41 49897.0 42-43 60009.0 44-45 71945.0 46-47 70370.0 48-49 64210.0 50-51 56805.0 52-53 56673.0 54-55 63825.0 56-57 68748.0 58-59 69636.0 60-61 69931.0 62-63 68684.0 64-65 70646.0 66-67 77276.0 68-69 69247.0 70-71 68039.0 72-73 64613.0 74-75 66275.0 76-77 66395.0 78-79 71225.0 80-81 72466.0 82-83 70565.0 84-85 69670.0 86-87 74669.0 88-89 80020.0 90-91 83700.0 92-93 87100.0 94-95 104902.0 96-97 295743.0 98-99 550706.0 100-101 5974937.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.23708871525596 #Duplication Level Percentage of deduplicated Percentage of total 1 88.63167187153584 73.77442334552485 2 7.734641686350087 12.876181124548783 3 1.9813365151145887 4.947620498501072 4 0.7579959314432655 2.5237349836538465 5 0.34418974156983856 1.4324676026964838 6 0.17273983565769246 0.8627016615178849 7 0.11055374884287314 0.6441520540166851 8 0.07361572119721504 0.49020466529041096 9 0.04547748780071728 0.34068723179537475 >10 0.14427281757867885 1.835840108733679 >50 0.002803583946020384 0.16030250786584918 >100 6.542217846025367E-4 0.0853298436525207 >500 4.6837178520361544E-5 0.026354372202505662 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.235034183171556E-5 0.0 0.0 0.0 3 0.0 2.235034183171556E-5 0.0 1.117517091585778E-5 0.0 4 0.0 8.940136732686224E-5 0.0 2.235034183171556E-5 0.0 5 0.0 8.940136732686224E-5 0.0 2.235034183171556E-5 0.0 6 0.0 8.940136732686224E-5 0.0 2.235034183171556E-5 1.117517091585778E-5 7 0.0 8.940136732686224E-5 0.0 4.470068366343112E-5 1.117517091585778E-5 8 0.0 1.0057653824272001E-4 0.0 4.470068366343112E-5 3.352551274757334E-5 9 0.0 2.3467858923301337E-4 0.0 6.705102549514668E-5 4.470068366343112E-5 10-11 1.117517091585778E-5 2.3467858923301337E-4 0.0 1.173392946165067E-4 5.58758545792889E-5 12-13 1.117517091585778E-5 2.4026617469094226E-4 0.0 1.5645239282200893E-4 6.146344003721778E-5 14-15 1.117517091585778E-5 2.961420292702312E-4 0.0 1.8997790556958227E-4 7.822619641100446E-5 16-17 1.117517091585778E-5 3.0172961472816007E-4 0.0 2.235034183171556E-4 8.940136732686224E-5 18-19 1.117517091585778E-5 3.4643029839159117E-4 0.0 2.570289310647289E-4 1.0616412370064891E-4 20-21 1.117517091585778E-5 3.7995581113916453E-4 0.0 3.184923711019467E-4 1.229268800744356E-4 22-23 3.911309820550223E-5 3.967185675129512E-4 0.0 3.4643029839159117E-4 1.5086480736408003E-4 24-25 5.58758545792889E-5 4.358316657184534E-4 0.0 3.855433965970934E-4 1.8997790556958227E-4 26-27 5.58758545792889E-5 4.358316657184534E-4 0.0 4.2465649480259563E-4 1.8997790556958227E-4 28-29 5.58758545792889E-5 4.470068366343112E-4 0.0 4.972951057556712E-4 1.9556549102751116E-4 30-31 5.58758545792889E-5 5.028826912136001E-4 0.0 9.890026260534134E-4 2.0674066194336892E-4 32-33 6.705102549514668E-5 5.140578621294578E-4 0.0 0.001966830081190969 2.1232824740129782E-4 34-35 6.705102549514668E-5 5.866964730825335E-4 0.0 0.003296675420178045 2.235034183171556E-4 36-37 7.822619641100446E-5 6.59335084035609E-4 0.0 0.0054758337487703125 2.3467858923301337E-4 38-39 7.822619641100446E-5 6.816854258673246E-4 0.0 0.008694282972537354 2.3467858923301337E-4 40-41 7.822619641100446E-5 7.152109386148979E-4 0.0 0.012108297687331904 2.682041019805867E-4 42-43 7.822619641100446E-5 7.487364513624713E-4 0.0 0.01514794417644522 2.682041019805867E-4 44-45 7.822619641100446E-5 8.325502332314046E-4 0.0 0.018723998869519712 2.737916874385156E-4 46-47 7.822619641100446E-5 8.716633314369068E-4 0.0 0.022707947301023008 2.961420292702312E-4 48-49 7.822619641100446E-5 8.772509168948357E-4 0.0 0.026703070903442164 3.0172961472816007E-4 50-51 7.822619641100446E-5 9.722398696796269E-4 0.0 0.030748482774982683 3.0172961472816007E-4 52-53 8.940136732686224E-5 9.834150405954847E-4 0.0 0.034732431206485975 3.408427129336623E-4 54-55 8.940136732686224E-5 0.0010225281388009867 0.0 0.038895182372643 3.7995581113916453E-4 56-57 8.940136732686224E-5 0.0010281157242589157 0.0 0.043443476935397116 3.855433965970934E-4 58-59 8.940136732686224E-5 0.0010560536515485603 0.0 0.04785208186170301 3.967185675129512E-4 60-61 8.940136732686224E-5 0.0010616412370064892 0.0 0.05205953371152347 4.190689093446667E-4 62-63 8.940136732686224E-5 0.0010784039933802757 0.0 0.05584791665199926 4.358316657184534E-4 64-65 8.940136732686224E-5 0.0012292688007443557 0.0 0.05983186508350255 4.414192511763823E-4 66-67 8.940136732686224E-5 0.0012292688007443557 0.0 0.06414548105702367 4.5259442209224013E-4 68-69 8.940136732686224E-5 0.0012627943134919293 0.0 0.06826911912497519 4.58182007550169E-4 70-71 8.940136732686224E-5 0.0013019074116974315 0.0 0.07237040685109497 5.140578621294579E-4 72-73 8.940136732686224E-5 0.001318670168071218 0.0 0.07586264776230053 5.58758545792889E-4 74-75 8.940136732686224E-5 0.0013354329244450046 0.0 0.07881848046954493 5.58758545792889E-4 76-77 8.940136732686224E-5 0.0013521956808187914 0.0 0.08165138629671487 5.58758545792889E-4 78-79 8.940136732686224E-5 0.0013689584371925781 0.0 0.08363497913427961 5.58758545792889E-4 80-81 8.940136732686224E-5 0.0013857211935663647 0.0 0.08419932526553045 5.643461312508178E-4 82-83 9.498895278479112E-5 0.0013857211935663647 0.0 0.08462956934579097 5.811088876246046E-4 84-85 1.0057653824272001E-4 0.0013857211935663647 0.0 0.08484189759319227 5.866964730825335E-4 86-87 1.0057653824272001E-4 0.0014304218772297958 0.0 0.08493688654597706 5.922840585404623E-4 88 1.0057653824272001E-4 0.0015309984154725158 0.0 0.0849648244732667 6.034592294563201E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12840 0.0 43.690895 1 CTTATAC 6955 0.0 34.80666 1 GTATCAA 21720 0.0 33.55508 1 TCAACGC 24880 0.0 28.450472 4 ATCAACG 25120 0.0 28.124872 3 CAACGCA 25345 0.0 27.878155 5 AACGCAG 25955 0.0 27.206417 6 TATCAAC 26365 0.0 27.089808 2 TATACAC 11185 0.0 25.672638 3 TTATACA 10465 0.0 24.15775 2 ACGCAGA 30015 0.0 23.497717 7 CGCAGAG 30160 0.0 23.38514 8 GTACATG 27515 0.0 20.482153 1 TACATGG 26920 0.0 20.185476 2 GAGTACT 19105 0.0 19.929583 12-13 GCAGAGT 35560 0.0 19.811373 9 ACATGGG 27240 0.0 19.333828 3 TACACAT 14040 0.0 19.261936 5 ACATCTC 13015 0.0 18.899235 8 ACACATC 13235 0.0 18.617203 6 >>END_MODULE