##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139111_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10895216 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.619279691196574 33.0 33.0 33.0 33.0 33.0 2 32.62709082591846 33.0 33.0 33.0 33.0 33.0 3 32.633609650327266 33.0 33.0 33.0 33.0 33.0 4 36.55045113378202 37.0 37.0 37.0 37.0 37.0 5 36.57370684527962 37.0 37.0 37.0 37.0 37.0 6 36.57917181265612 37.0 37.0 37.0 37.0 37.0 7 36.554986427070375 37.0 37.0 37.0 37.0 37.0 8 36.53868798929732 37.0 37.0 37.0 37.0 37.0 9 36.57492884950606 37.0 37.0 37.0 37.0 37.0 10-11 36.5293939101345 37.0 37.0 37.0 37.0 37.0 12-13 36.51683835364072 37.0 37.0 37.0 37.0 37.0 14-15 38.616215272831674 40.0 37.0 40.0 37.0 40.0 16-17 38.55674086681714 40.0 37.0 40.0 37.0 40.0 18-19 38.57282063063275 40.0 37.0 40.0 37.0 40.0 20-21 38.56695320341116 40.0 37.0 40.0 37.0 40.0 22-23 38.56517333109424 40.0 37.0 40.0 37.0 40.0 24-25 38.56198093915607 40.0 37.0 40.0 37.0 40.0 26-27 38.439399169859925 40.0 37.0 40.0 37.0 40.0 28-29 38.3907916273613 40.0 37.0 40.0 37.0 40.0 30-31 38.23375489036755 40.0 37.0 40.0 37.0 40.0 32-33 38.25275000534374 40.0 37.0 40.0 37.0 40.0 34-35 38.229417369524796 40.0 37.0 40.0 37.0 40.0 36-37 38.18466990699174 40.0 37.0 40.0 37.0 40.0 38-39 38.13199757332619 40.0 37.0 40.0 37.0 40.0 40-41 38.10784011356006 40.0 37.0 40.0 37.0 40.0 42-43 38.06080659368352 40.0 37.0 40.0 33.0 40.0 44-45 37.986786909027316 40.0 37.0 40.0 33.0 40.0 46-47 37.839075001079664 40.0 37.0 40.0 33.0 40.0 48-49 37.85157956970089 40.0 37.0 40.0 33.0 40.0 50-51 37.81083371457245 40.0 37.0 40.0 33.0 40.0 52-53 37.74437432464774 40.0 37.0 40.0 33.0 40.0 54-55 37.57927302872531 40.0 37.0 40.0 33.0 40.0 56-57 37.461776517413526 40.0 37.0 40.0 33.0 40.0 58-59 37.33222328188073 38.5 37.0 40.0 33.0 40.0 60-61 37.163151246189685 37.0 37.0 40.0 33.0 40.0 62-63 36.99168243824566 37.0 37.0 40.0 33.0 40.0 64-65 36.813644332420935 37.0 37.0 40.0 33.0 40.0 66-67 36.61094539819521 37.0 37.0 40.0 33.0 40.0 68-69 36.39389478641568 37.0 37.0 40.0 33.0 40.0 70-71 36.16020109828838 37.0 37.0 38.5 33.0 40.0 72-73 35.93489562202815 37.0 37.0 37.0 33.0 40.0 74-75 35.743511495729315 37.0 35.0 37.0 33.0 40.0 76-77 34.07339923448106 35.0 33.0 37.0 30.0 37.0 78-79 35.24358784664673 37.0 33.0 37.0 33.0 37.0 80-81 35.304571504324414 37.0 33.0 37.0 33.0 37.0 82-83 35.16670090107701 37.0 33.0 37.0 33.0 37.0 84-85 35.035139176371985 37.0 33.0 37.0 33.0 37.0 86-87 34.95316044013286 37.0 33.0 37.0 33.0 37.0 88-89 34.821074901971905 37.0 33.0 37.0 33.0 37.0 90-91 34.675010633599726 37.0 33.0 37.0 33.0 37.0 92-93 34.67223248441651 37.0 33.0 37.0 33.0 37.0 94-95 34.73621074342049 37.0 33.0 37.0 33.0 37.0 96-97 34.74321203918602 37.0 33.0 37.0 33.0 37.0 98-99 34.74337953584396 37.0 33.0 37.0 33.0 37.0 100 34.7289872932447 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 2.0 17 2.0 18 6.0 19 20.0 20 76.0 21 385.0 22 1508.0 23 4395.0 24 9860.0 25 19010.0 26 33208.0 27 52656.0 28 77355.0 29 107347.0 30 146098.0 31 194725.0 32 258284.0 33 346901.0 34 481218.0 35 702668.0 36 1250161.0 37 3155608.0 38 3947265.0 39 106458.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.80163110120992 19.830483397483814 14.249391659605465 24.118493841700797 2 14.672035873359462 20.54196080187855 41.90724626294697 22.87875706181502 3 18.392769817505226 25.830979394993182 30.047059186343805 25.72919160115779 4 12.633223609334593 17.84290462896743 38.22525409317264 31.298617668525342 5 13.635424942470161 37.526002238046495 35.212188542200536 13.6263842772828 6 30.427223624676735 37.407160815273976 18.54000813570473 13.625607424344555 7 26.905864004899033 32.32608697248407 22.654208966577624 18.113840056039272 8 24.516466676750603 36.84395059262708 20.842927758384967 17.796654972237356 9 25.663880887160097 16.81109551303026 20.708283406981874 36.816740192827766 10-11 24.600444563179018 26.522416395884367 28.47632173053696 20.400817310399653 12-13 25.462027473075903 23.940427963199433 28.53552420386477 22.062020359859893 14-15 22.490542685068775 25.35325468124812 26.145523093949347 26.010679539733754 16-17 22.193791293352973 28.457343112793726 26.761736527297852 22.587129066555452 18-19 22.224442360757234 27.5621382816091 28.44507626099382 21.768343096639846 20-21 23.036752052968364 26.70117713187644 28.35222097271435 21.909849842440853 22-23 22.6951733115811 26.79568231138591 28.243763647446258 22.265380729586735 24-25 22.503472872211063 26.93924716044325 28.32156092924889 22.235719038096796 26-27 22.497344220479636 27.076989481345258 28.206024664827652 22.219641633347454 28-29 22.290026408582932 27.11366164242561 28.316616717332614 22.27969523165884 30-31 22.818525902605533 26.935272588976904 28.076613127914996 22.16958838050257 32-33 22.287842588001684 27.258612544441004 28.137641548267084 22.315903319290225 34-35 22.50058548890331 27.258147850048747 28.160036156766832 22.08123050428111 36-37 22.453573847518445 27.18210024987031 28.052358199129575 22.31196770348167 38-39 22.33637434476103 27.109224447861347 28.19740912619837 22.356992081179257 40-41 22.5999209132739 26.956666612395132 28.099545597539887 22.343866876791076 42-43 22.522436160340597 27.028393559107457 27.95845753159482 22.49071274895713 44-45 22.534335712345044 27.230918342254235 27.71258242059307 22.522163524807656 46-47 22.758007416784846 27.132172703494163 27.337182875860428 22.772637003860567 48-49 22.591946758895958 27.250885387898606 27.416762843218777 22.74040500998666 50-51 22.58084424078181 27.405318482487402 27.345986064135097 22.667851212595686 52-53 22.749163294539322 27.33652298268044 27.321696187340365 22.592617535439874 54-55 22.675750974834035 27.258032630963157 27.274827018058733 22.791389376144075 56-57 22.76706939010445 27.46474446532872 27.116101102810514 22.652085041756315 58-59 22.611249417961215 27.562216363750203 27.24461266498422 22.58192155330437 60-61 22.753415108035963 27.59997138860263 27.11006412949748 22.53654937386393 62-63 22.686799070679392 27.700905899310136 27.042942482516626 22.56935254749385 64-65 22.678501447811378 27.593236611998062 27.031462976926967 22.696798963263593 66-67 22.756236438666857 27.537553835566136 26.97004474417178 22.736164981595227 68-69 22.701145593209496 27.47388977225868 27.07316968986115 22.751794944670674 70-71 22.724220440516117 27.279100814380108 27.108355730783284 22.888323014320495 72-73 22.756541365316153 27.332105924274487 27.023235836245263 22.8881168741641 74-75 22.60946365737296 27.479733624820174 27.026044152387403 22.884758565419467 76-77 22.766121718729046 27.371797114997996 26.98911730706259 22.872963859210365 78-79 22.73327541892378 27.41477300547278 26.928932839232893 22.923018736370544 80-81 22.760449933633602 27.451250195276067 26.928772739087663 22.859527132002665 82-83 22.793250347193233 27.371424783397742 27.009284281292672 22.826040588116353 84-85 22.839876778268938 27.358942299199118 26.977793752085354 22.82338717044659 86-87 22.687360675135917 27.378873869642067 27.076860634723825 22.85690482049819 88-89 22.808627598435162 27.35685838377234 26.990051749059447 22.844462268733047 90-91 22.855048502354183 27.38230110611654 26.971565866735315 22.791084524793963 92-93 22.77981580824168 27.389250787071482 27.035643625314997 22.79528977937184 94-95 22.693786752455498 27.421585868084254 27.041559993881258 22.843067385578987 96-97 22.80500774632816 27.491904640212404 27.09524046467341 22.60784714878602 98-99 23.937358568411266 29.459231313752205 27.229337505903345 19.374072611933187 100 22.800639758066296 30.441017214777155 21.085768508075034 25.672574519081515 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2047.0 1 1870.5 2 2552.5 3 3629.0 4 4969.0 5 8319.5 6 11180.5 7 12851.5 8 13687.0 9 13225.0 10 12129.0 11 11044.5 12 11969.5 13 15904.0 14 25317.0 15 38745.0 16 50187.0 17 57346.0 18 59333.5 19 56264.0 20 50281.0 21 43602.0 22 39064.5 23 39001.0 24 43739.0 25 53249.5 26 67192.0 27 83945.0 28 102520.5 29 124376.5 30 147203.0 31 171024.0 32 198048.5 33 225339.0 34 251073.5 35 275414.5 36 302566.5 37 328457.5 38 349132.0 39 367903.0 40 387192.0 41 402296.0 42 411769.0 43 422218.5 44 431826.5 45 442504.5 46 453241.0 47 462639.0 48 466542.0 49 462239.0 50 455951.5 51 445176.5 52 427938.0 53 407305.0 54 386672.5 55 363298.5 56 337414.0 57 309070.0 58 276016.5 59 239932.5 60 201748.5 61 165684.5 62 132186.5 63 102108.0 64 76903.5 65 56875.0 66 42467.5 67 32499.0 68 24939.5 69 18203.0 70 13038.5 71 9351.5 72 6606.0 73 4558.0 74 3091.5 75 2047.0 76 1273.5 77 761.5 78 483.0 79 322.5 80 212.5 81 141.5 82 98.0 83 65.0 84 48.0 85 36.0 86 28.0 87 25.5 88 22.0 89 18.0 90 13.5 91 9.5 92 7.0 93 5.0 94 3.0 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 2.937068893356497E-4 7 0.0 8 0.0 9 9.178340291739053E-6 10-11 0.0064386057146549455 12-13 3.2124191021086684E-5 14-15 0.00678279347559516 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 156.0 20-21 575.0 22-23 1305.0 24-25 3268.0 26-27 3937.0 28-29 6852.0 30-31 17356.0 32-33 21913.0 34-35 31611.0 36-37 47959.0 38-39 58626.0 40-41 60121.0 42-43 71993.0 44-45 86627.0 46-47 83862.0 48-49 76045.0 50-51 68500.0 52-53 66729.0 54-55 73583.0 56-57 79882.0 58-59 80635.0 60-61 82092.0 62-63 79787.0 64-65 82776.0 66-67 89673.0 68-69 83814.0 70-71 82893.0 72-73 79415.0 74-75 80541.0 76-77 80516.0 78-79 87243.0 80-81 89621.0 82-83 87087.0 84-85 85646.0 86-87 91384.0 88-89 98361.0 90-91 103148.0 92-93 107134.0 94-95 128281.0 96-97 365641.0 98-99 672745.0 100-101 7295883.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.72116089647993 #Duplication Level Percentage of deduplicated Percentage of total 1 88.73486579262183 73.40251110359024 2 7.571259684201322 12.526067810516986 3 1.9238343898629071 4.774254423060925 4 0.7776976819165798 2.5732822029856344 5 0.3610763617955281 1.493432791000174 6 0.1941179934597616 0.9634599461932066 7 0.1260323283237968 0.7297878356601546 8 0.07530786772590717 0.49836433943404757 9 0.05625560905233513 0.4188176358972918 >10 0.17494253734465828 2.2529966894265376 >50 0.003413166644020868 0.1844127319663745 >100 0.0011350663121645573 0.12929694212369844 >500 2.050833253774948E-5 0.00900827203129629 >1k 4.10124066098563E-5 0.04430727611343339 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 9.178340291739053E-6 0.0 0.0 0.0 3 0.0 9.178340291739053E-6 0.0 9.178340291739053E-6 0.0 4 0.0 6.424838204217337E-5 0.0 9.178340291739053E-6 0.0 5 0.0 6.424838204217337E-5 0.0 9.178340291739053E-6 0.0 6 0.0 6.424838204217337E-5 0.0 9.178340291739053E-6 0.0 7 0.0 6.424838204217337E-5 0.0 9.178340291739053E-6 0.0 8 0.0 7.342672233391242E-5 0.0 9.178340291739053E-6 0.0 9 0.0 1.376751043760858E-4 0.0 1.8356680583478106E-5 0.0 10-11 0.0 1.376751043760858E-4 0.0 2.7535020875217157E-5 0.0 12-13 0.0 1.376751043760858E-4 0.0 3.671336116695621E-5 0.0 14-15 0.0 2.2028016700173728E-4 0.0 5.048087160456479E-5 9.178340291739053E-6 16-17 4.589170145869526E-6 2.2028016700173728E-4 0.0 5.507004175043432E-5 9.178340291739053E-6 18-19 9.178340291739053E-6 2.4322601773108492E-4 0.0 5.965921189630384E-5 1.3767510437608578E-5 20-21 9.178340291739053E-6 2.661718684604325E-4 0.0 9.637257306326006E-5 1.8356680583478106E-5 22-23 9.178340291739053E-6 2.8452854904391063E-4 0.0 1.1014008350086864E-4 1.8356680583478106E-5 24-25 1.8356680583478106E-5 3.625444415236926E-4 0.0 1.193184237926077E-4 2.2945850729347633E-5 26-27 2.753502087521716E-5 3.9007946239890973E-4 0.0 1.376751043760858E-4 2.753502087521716E-5 28-29 2.753502087521716E-5 3.946686325447793E-4 0.0 2.4322601773108492E-4 2.753502087521716E-5 30-31 2.753502087521716E-5 4.818628653163003E-4 0.0 6.287163099841251E-4 2.753502087521716E-5 32-33 2.753502087521716E-5 5.231653966291259E-4 0.0 0.0017897763568891153 2.753502087521716E-5 34-35 2.753502087521716E-5 6.241271398382557E-4 0.0 0.0032904349945884507 2.753502087521716E-5 36-37 2.753502087521716E-5 7.159105427556461E-4 0.0 0.005507004175043432 2.753502087521716E-5 38-39 2.753502087521716E-5 7.250888830473852E-4 0.0 0.009325193736406879 3.671336116695621E-5 40-41 2.753502087521716E-5 7.84748094943689E-4 0.0 0.013620656992940756 3.671336116695621E-5 42-43 2.753502087521716E-5 8.122831158189061E-4 0.0 0.017783034315244417 4.130253131282574E-5 44-45 2.753502087521716E-5 8.81120668006949E-4 0.0 0.022436452843156117 4.5891701458695266E-5 46-47 2.753502087521716E-5 9.40779879903253E-4 0.0 0.02754878838565477 4.5891701458695266E-5 48-49 2.753502087521716E-5 9.453690500491224E-4 0.0 0.03274372899077907 4.5891701458695266E-5 50-51 2.753502087521716E-5 0.0010738658141334692 0.0 0.03796161544663272 4.5891701458695266E-5 52-53 3.2124191021086684E-5 0.0011014008350086863 0.0 0.04332176617700833 4.5891701458695266E-5 54-55 3.671336116695621E-5 0.0011059900051545559 0.0 0.04783292043039808 5.507004175043432E-5 56-57 3.671336116695621E-5 0.0011289358558839036 0.0 0.052201810409265866 6.88375521880429E-5 58-59 3.671336116695621E-5 0.0011335250260297732 0.0 0.05692865565951148 8.260506262565148E-5 60-61 3.671336116695621E-5 0.0011472925364673816 0.0 0.061852835226029475 8.260506262565148E-5 62-63 3.671336116695621E-5 0.0011931842379260768 0.0 0.06664851802846314 9.178340291739053E-5 64-65 3.671336116695621E-5 0.0013400376825939018 0.0 0.07136159576827114 9.178340291739053E-5 66-67 3.671336116695621E-5 0.0013446268527397714 0.0 0.07643721794960284 9.178340291739053E-5 68-69 3.671336116695621E-5 0.001367572703469119 0.0 0.08147612676976757 9.637257306326006E-5 70-71 3.671336116695621E-5 0.0013813402139067274 0.0 0.08587255176951059 1.0096174320912959E-4 72-73 3.671336116695621E-5 0.001395107724344336 0.0 0.08918134344468251 1.0096174320912959E-4 74-75 3.671336116695621E-5 0.0014226427452195532 0.0 0.09188436466059965 1.0096174320912959E-4 76-77 3.671336116695621E-5 0.0014501777660947705 0.0 0.09461033172724617 1.0096174320912959E-4 78-79 3.671336116695621E-5 0.0014685344466782485 0.0 0.09614311455596658 1.0096174320912959E-4 80-81 3.671336116695621E-5 0.0014685344466782485 0.0 0.09670758248390854 1.1014008350086864E-4 82-83 3.671336116695621E-5 0.0014685344466782485 0.0 0.09704259190455701 1.193184237926077E-4 84-85 3.671336116695621E-5 0.0014777127869699876 0.0 0.09717567783878722 1.193184237926077E-4 86-87 3.671336116695621E-5 0.0014914802974075963 0.0 0.09726746124170461 1.239075939384772E-4 88 3.671336116695621E-5 0.0015970312107625952 0.0 0.09727205041185048 1.2849676408434674E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13745 0.0 47.92771 1 GTATCAA 24600 0.0 37.25639 1 TCAACGC 29555 0.0 30.284924 4 ATCAACG 29900 0.0 29.947262 3 CAACGCA 30580 0.0 29.27089 5 TATCAAC 30980 0.0 29.153269 2 AACGCAG 31195 0.0 28.721413 6 CTTATAC 7405 0.0 25.276705 1 ACGCAGA 36135 0.0 24.842442 7 CGCAGAG 36865 0.0 24.316051 8 GTACATG 34285 0.0 22.138626 1 TACATGG 34385 0.0 21.43604 2 TATACAC 10890 0.0 20.941328 3 GCAGAGT 43235 0.0 20.647102 9 ACATGGG 34825 0.0 20.609201 3 GAGTACT 23775 0.0 19.79385 12-13 CATGGGG 26065 0.0 18.870466 4 GTGGTAT 7220 0.0 18.653631 1 AGAGTAC 38675 0.0 18.484436 10-11 CAGAGTA 41835 0.0 18.482227 10-11 >>END_MODULE