##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139107_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10689910 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.577135261194904 33.0 33.0 33.0 33.0 33.0 2 32.5812473631677 33.0 33.0 33.0 33.0 33.0 3 32.5763256192054 33.0 33.0 33.0 33.0 33.0 4 36.47496180978138 37.0 37.0 37.0 37.0 37.0 5 36.504716035962886 37.0 37.0 37.0 37.0 37.0 6 36.50125389268946 37.0 37.0 37.0 37.0 37.0 7 36.47944014495913 37.0 37.0 37.0 37.0 37.0 8 36.46078273811473 37.0 37.0 37.0 37.0 37.0 9 36.497148245401505 37.0 37.0 37.0 37.0 37.0 10-11 36.453588757997025 37.0 37.0 37.0 37.0 37.0 12-13 36.384459644655564 37.0 37.0 37.0 37.0 37.0 14-15 38.43090049401725 40.0 37.0 40.0 37.0 40.0 16-17 38.39117710064912 40.0 37.0 40.0 37.0 40.0 18-19 38.39556923304312 40.0 37.0 40.0 37.0 40.0 20-21 38.391364342583934 40.0 37.0 40.0 37.0 40.0 22-23 38.38738325338078 40.0 37.0 40.0 37.0 40.0 24-25 38.38780207672101 40.0 37.0 40.0 37.0 40.0 26-27 38.24228442763514 40.0 37.0 40.0 37.0 40.0 28-29 38.165379590533526 40.0 37.0 40.0 37.0 40.0 30-31 38.132706566945124 40.0 37.0 40.0 37.0 40.0 32-33 38.05945313072864 40.0 37.0 40.0 33.0 40.0 34-35 38.024036676421616 40.0 37.0 40.0 33.0 40.0 36-37 37.98620337172923 40.0 37.0 40.0 33.0 40.0 38-39 37.94005146530395 40.0 37.0 40.0 33.0 40.0 40-41 37.907896082847245 40.0 37.0 40.0 33.0 40.0 42-43 37.80967426267703 40.0 37.0 40.0 33.0 40.0 44-45 37.76365507325506 40.0 37.0 40.0 33.0 40.0 46-47 37.7267806432872 40.0 37.0 40.0 33.0 40.0 48-49 37.70052230315288 40.0 37.0 40.0 33.0 40.0 50-51 37.635101232811095 40.0 37.0 40.0 33.0 40.0 52-53 37.52939846860154 40.0 37.0 40.0 33.0 40.0 54-55 37.32185321106175 40.0 37.0 40.0 33.0 40.0 56-57 37.16578935699759 38.5 37.0 40.0 33.0 40.0 58-59 37.0747715558675 37.0 37.0 40.0 33.0 40.0 60-61 36.92996595903918 37.0 37.0 40.0 33.0 40.0 62-63 36.74404380846208 37.0 37.0 40.0 33.0 40.0 64-65 36.594099798574305 37.0 37.0 40.0 33.0 40.0 66-67 36.37328238531081 37.0 37.0 40.0 33.0 40.0 68-69 36.152314248545935 37.0 37.0 40.0 33.0 40.0 70-71 35.8883466792372 37.0 35.0 37.0 33.0 40.0 72-73 35.676081914634665 37.0 33.0 37.0 33.0 40.0 74-75 35.49787902651386 37.0 33.0 37.0 33.0 40.0 76-77 33.70699022531777 35.0 33.0 37.0 27.0 37.0 78-79 34.942719273595515 37.0 33.0 37.0 33.0 37.0 80-81 35.01637260099627 37.0 33.0 37.0 33.0 37.0 82-83 34.90661573836826 37.0 33.0 37.0 33.0 37.0 84-85 34.759099617723436 37.0 33.0 37.0 33.0 37.0 86-87 34.638990381678695 37.0 33.0 37.0 33.0 37.0 88-89 34.5671233531892 37.0 33.0 37.0 33.0 37.0 90-91 34.48757281288303 37.0 33.0 37.0 33.0 37.0 92-93 34.420727605340105 37.0 33.0 37.0 33.0 37.0 94-95 34.41431494758517 37.0 33.0 37.0 33.0 37.0 96-97 34.42686656167187 37.0 33.0 37.0 33.0 37.0 98-99 34.437028547846225 37.0 33.0 37.0 33.0 37.0 100 34.44480302124898 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 14.0 20 89.0 21 473.0 22 1765.0 23 5120.0 24 11813.0 25 22888.0 26 39987.0 27 62959.0 28 92520.0 29 127876.0 30 172327.0 31 226258.0 32 296714.0 33 394105.0 34 537914.0 35 769740.0 36 1315531.0 37 3040695.0 38 3491299.0 39 79823.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.7185364516633 19.962450572549255 14.264993811921709 24.05401916386574 2 14.72738311173808 20.5926242596991 41.84252252825328 22.837470100309545 3 18.560913983373105 25.581927256637332 29.90673448139414 25.950424278595424 4 12.663193609674916 17.816164963035234 38.381090205623806 31.13955122166604 5 13.758366534423583 37.45111979427329 35.22826665519167 13.562247016111453 6 30.63808406957291 37.3193763688144 18.553480535099087 13.489059026513605 7 27.109816640177513 32.210149570950556 22.683549253454892 17.996484535417043 8 24.438503224068302 37.08556012164742 20.68806004914915 17.78787660513512 9 25.580168588884284 16.987935352121767 20.91591042394183 36.51598563505212 10-11 24.58265359282325 26.666623634754107 28.433701059735682 20.31702171268696 12-13 25.383188190667543 24.040128777817944 28.63103899766176 21.94564403385275 14-15 22.355914957886085 25.488160654064174 26.200905146025338 25.955019242024402 16-17 22.121140402491697 28.58332764260878 26.90407122230215 22.391460732597373 18-19 22.151790800858006 27.765799712064926 28.51015583854307 21.572253648533994 20-21 22.822417459323987 26.91500313364638 28.510985443032677 21.751593963996953 22-23 22.602594874645206 26.880623613414468 28.335852246858543 22.18092926508178 24-25 22.392781926857523 27.036544288438463 28.348101183502216 22.222572601201797 26-27 22.351226784338596 27.176842004075123 28.27549773360603 22.19643347798025 28-29 22.279674608560946 27.25017060615186 28.297385250040076 22.17276953524712 30-31 22.548499243712815 27.086681498031922 28.24687312670463 22.117946131550635 32-33 22.313997595065832 27.209580179859653 28.21384098160946 22.262581243465057 34-35 22.468876281978474 27.23929605337265 28.178979300793145 22.11284836385573 36-37 22.429212602012306 27.21779203837018 28.111901533570116 22.241093826047393 38-39 22.30931601723661 27.279986274855844 28.167487605081952 22.243210102825593 40-41 22.55840672253175 27.139646230858656 28.05844419978609 22.243502846823507 42-43 22.45926784633675 27.260778254908484 27.875572802058468 22.404381096696298 44-45 22.50406524498767 27.333823787997723 27.728213227099918 22.433897739914684 46-47 22.61425082779958 27.328953007058175 27.476437136121273 22.58035902902097 48-49 22.5302383372835 27.478462870529675 27.439352387156074 22.55194640503075 50-51 22.54978247547567 27.59521350729951 27.32474432076053 22.530259696464288 52-53 22.644589000010317 27.49397080143512 27.28219596946418 22.579244229090385 54-55 22.623744484749583 27.39526412736891 27.309269847581003 22.671721540300503 56-57 22.61307957518717 27.537875270448968 27.22899858524835 22.62004656911551 58-59 22.556606388712957 27.571757652527417 27.280414098569754 22.59122186018987 60-61 22.672423170194907 27.54043091001412 27.260107117754146 22.52703880203683 62-63 22.59229905624662 27.64067931858375 27.239652088731575 22.527369536438055 64-65 22.603356958974995 27.597462523939292 27.144701424214134 22.654479092871572 66-67 22.644453944052128 27.58145150662757 27.058395258893768 22.715699290426535 68-69 22.591228519294738 27.583582726157264 27.102494811228894 22.722693943319104 70-71 22.601970626626848 27.412890091236306 27.14402557159526 22.841113710541585 72-73 22.656423806858303 27.438021985693613 27.0765300050172 22.829024202430883 74-75 22.570382767727278 27.53870498547298 27.059235990470597 22.831676256329146 76-77 22.741312722750443 27.470370141463608 26.985691034309905 22.802626101476044 78-79 22.65593207183207 27.45776829902123 26.985277637415262 22.90102199173144 80-81 22.663796208954086 27.549974214695183 26.99688526998902 22.789344306361713 82-83 22.679314122538162 27.51289717297919 27.062786316142684 22.745002388339962 84-85 22.768114553290577 27.513134113911885 27.00756558194718 22.711185750850362 86-87 22.670680455691485 27.5291943366404 27.086756252302063 22.71336895536605 88-89 22.674466575822326 27.52124699684697 27.05493317334602 22.74935325398469 90-91 22.72314745305736 27.577646256353667 27.009580718104537 22.689625572484434 92-93 22.747779928025068 27.477695114687155 27.100199112474677 22.6743258448131 94-95 22.595159368762456 27.554616455814035 27.15243981589208 22.69778435953143 96-97 22.681221650297825 27.652723788198415 27.183243057245406 22.48281150425836 98-99 23.814042103208976 29.52995893203277 27.358517286445338 19.29748167831292 100 22.66983735517089 30.5558358000522 21.18182757624908 25.592499268527824 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1636.0 1 1490.0 2 2101.5 3 3031.5 4 4151.0 5 7016.5 6 9466.0 7 10877.5 8 11605.5 9 11403.5 10 10662.0 11 9689.5 12 10531.5 13 14101.0 14 22483.5 15 34577.0 16 45137.0 17 51794.5 18 53634.0 19 51009.0 20 45780.0 21 39855.5 22 35908.5 23 36207.0 24 40889.5 25 50364.0 26 63569.0 27 79298.5 28 98016.0 29 120145.0 30 144141.5 31 168658.5 32 194265.0 33 219696.5 34 245450.5 35 269970.0 36 294578.0 37 319030.0 38 341313.5 39 360297.5 40 378975.0 41 396776.5 42 407004.5 43 416396.5 44 426635.0 45 436180.0 46 444490.5 47 448596.0 48 449000.5 49 444092.0 50 436724.5 51 427292.5 52 412477.5 53 392774.0 54 371246.5 55 346247.5 56 318562.5 57 289302.0 58 256362.0 59 221104.5 60 183173.5 61 148088.5 62 118067.0 63 91169.0 64 67914.0 65 50153.0 66 37845.0 67 28977.5 68 22004.5 69 15750.0 70 11043.5 71 8002.5 72 5627.0 73 3765.0 74 2551.0 75 1697.0 76 1111.0 77 739.0 78 523.0 79 382.0 80 271.0 81 191.5 82 133.5 83 97.0 84 67.5 85 46.5 86 37.5 87 24.0 88 14.5 89 13.0 90 11.5 91 9.5 92 7.0 93 4.0 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.870923141541884E-5 7 0.0 8 0.0 9 0.0 10-11 0.0015809300546028918 12-13 2.385427005465902E-4 14-15 0.007539820260413792 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 164.0 20-21 646.0 22-23 1348.0 24-25 3241.0 26-27 3703.0 28-29 5664.0 30-31 13265.0 32-33 16830.0 34-35 23946.0 36-37 35055.0 38-39 41500.0 40-41 47044.0 42-43 56452.0 44-45 68912.0 46-47 67629.0 48-49 61552.0 50-51 53088.0 52-53 50871.0 54-55 54957.0 56-57 61312.0 58-59 63426.0 60-61 65638.0 62-63 64993.0 64-65 70019.0 66-67 75528.0 68-69 76397.0 70-71 77091.0 72-73 73891.0 74-75 77316.0 76-77 75560.0 78-79 83160.0 80-81 86436.0 82-83 84944.0 84-85 85773.0 86-87 90751.0 88-89 99273.0 90-91 104988.0 92-93 112144.0 94-95 136851.0 96-97 387969.0 98-99 685806.0 100-101 7344777.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.40166656868873 #Duplication Level Percentage of deduplicated Percentage of total 1 88.43142805048764 73.75328476459757 2 8.054913115866338 13.435863558584838 3 1.9800645182894865 4.95422042216613 4 0.6971083512133441 2.325599930805747 5 0.3207352116096479 1.3374925587752835 6 0.16697222161487363 0.8355456932014135 7 0.10339505282272327 0.6036323804260906 8 0.06364082419216606 0.42462006395452573 9 0.03980762439736237 0.29880199951923736 >10 0.13838364889468208 1.7836523759668612 >50 0.002864925603158166 0.1630030257153978 >100 6.864550085668036E-4 0.08428322628691987 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.35461570770942E-6 2 0.0 2.806384712312826E-5 0.0 0.0 9.35461570770942E-6 3 0.0 2.806384712312826E-5 0.0 0.0 9.35461570770942E-6 4 0.0 8.419154136938478E-5 0.0 9.35461570770942E-6 9.35461570770942E-6 5 0.0 9.35461570770942E-5 0.0 9.35461570770942E-6 9.35461570770942E-6 6 6.548230995396593E-5 9.35461570770942E-5 0.0 1.870923141541884E-5 9.35461570770942E-6 7 6.548230995396593E-5 9.35461570770942E-5 0.0 2.806384712312826E-5 9.35461570770942E-6 8 6.548230995396593E-5 1.0290077278480362E-4 0.0 2.806384712312826E-5 1.870923141541884E-5 9 6.548230995396593E-5 1.5902846703106014E-4 0.0 3.741846283083768E-5 1.870923141541884E-5 10-11 6.548230995396593E-5 1.5902846703106014E-4 0.0 3.741846283083768E-5 1.870923141541884E-5 12-13 6.548230995396593E-5 1.6370577488491485E-4 0.0 4.209577068469239E-5 1.870923141541884E-5 14-15 8.419154136938478E-5 2.432200084004449E-4 0.0 6.548230995396593E-5 2.806384712312826E-5 16-17 1.1225538849251304E-4 2.432200084004449E-4 0.0 6.548230995396593E-5 2.806384712312826E-5 18-19 1.1225538849251304E-4 2.525746241081543E-4 0.0 6.548230995396593E-5 2.806384712312826E-5 20-21 1.3096461990793186E-4 2.7128385552357314E-4 0.0 7.015961780782064E-5 2.806384712312826E-5 22-23 1.3096461990793186E-4 3.133796262082656E-4 0.0 8.419154136938478E-5 3.741846283083768E-5 24-25 1.3096461990793186E-4 3.3208885762368444E-4 0.0 1.0757808063865833E-4 5.145038639240181E-5 26-27 1.4031923561564128E-4 3.367661654775391E-4 0.0 2.0112423771575253E-4 5.612769424625652E-5 28-29 1.4967385132335072E-4 3.367661654775391E-4 0.0 5.6595425031642E-4 5.612769424625652E-5 30-31 1.4967385132335072E-4 3.9289385972379563E-4 0.0 0.00209543391852691 5.612769424625652E-5 32-33 1.4967385132335072E-4 3.9289385972379563E-4 0.0 0.006202110214211345 5.612769424625652E-5 34-35 1.6838308273876956E-4 4.490215539700521E-4 0.0 0.011880361948790961 5.612769424625652E-5 36-37 1.824150063003337E-4 5.098265560701633E-4 0.0 0.02080466533394575 5.612769424625652E-5 38-39 1.9644692986189782E-4 5.332130953394369E-4 0.0 0.0418151322134611 6.548230995396594E-5 40-41 2.0112423771575253E-4 6.080500210011123E-4 0.0 0.06468716761881063 7.483692566167536E-5 42-43 2.338653926927355E-4 6.220819445626764E-4 0.0 0.08044501777844715 7.483692566167536E-5 44-45 2.338653926927355E-4 7.390146409090442E-4 0.0 0.09929924573733549 7.951423351553007E-5 46-47 2.338653926927355E-4 8.232061822784289E-4 0.0 0.11884103795074047 8.886884922323949E-5 48-49 2.338653926927355E-4 8.278834901322837E-4 0.0 0.13674109510744242 9.35461570770942E-5 50-51 2.385427005465902E-4 9.02720415793959E-4 0.0 0.15325199183154958 9.35461570770942E-5 52-53 2.432200084004449E-4 9.073977236478137E-4 0.0 0.19132995506978073 1.0290077278480362E-4 54-55 2.525746241081543E-4 9.120750315016684E-4 0.0 0.23636775239454777 1.1225538849251304E-4 56-57 2.619292398158637E-4 9.261069550632325E-4 0.0 0.27902012271384885 1.2628731205407715E-4 58-59 2.7128385552357314E-4 9.307842629170872E-4 0.0 0.30773411562866293 1.4031923561564128E-4 60-61 2.8063847123128256E-4 9.494934943325061E-4 0.0 0.3276360605468147 1.4031923561564128E-4 62-63 2.8063847123128256E-4 9.728800336017795E-4 0.0 0.3405781713784307 1.4031923561564128E-4 64-65 2.8063847123128256E-4 0.001113199269217421 0.0 0.34482048960187694 1.4031923561564128E-4 66-67 2.8063847123128256E-4 0.0011319085006328397 0.0 0.34872136435199175 1.4031923561564128E-4 68-69 2.8999308693899203E-4 0.0011646496556098227 0.0 0.35273917179845293 1.4499654346949601E-4 70-71 2.9467039479284677E-4 0.0012207773498560791 0.0 0.3564202130794366 1.5435115917720543E-4 72-73 3.180569340621203E-4 0.0012348092734176435 0.0 0.35948384972371145 1.6838308273876956E-4 74-75 3.367661654775391E-4 0.001258195812686917 0.0 0.361976854809816 1.6838308273876956E-4 76-77 3.367661654775391E-4 0.0012909369676638999 0.0 0.36465227490222085 1.6838308273876956E-4 78-79 3.367661654775391E-4 0.0013002915833716093 0.0 0.3663782015002933 1.6838308273876956E-4 80-81 3.367661654775391E-4 0.0013002915833716093 0.0 0.3669394784427558 1.7773769844647898E-4 82-83 3.367661654775391E-4 0.0013096461990793188 0.0 0.3672294715296949 1.9644692986189782E-4 84-85 3.367661654775391E-4 0.0013517419697640111 0.0 0.3674399503831183 2.0112423771575253E-4 86-87 3.367661654775391E-4 0.0013564192776178657 0.0 0.36754752846375693 2.0580154556960724E-4 88 3.367661654775391E-4 0.0014593200504026695 0.0 0.3675522057716108 2.0580154556960724E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13300 0.0 48.358524 1 GTATCAA 23135 0.0 35.743713 1 TCAACGC 26795 0.0 30.195074 4 ATCAACG 27195 0.0 29.798985 3 CAACGCA 27700 0.0 29.193932 5 TATCAAC 28440 0.0 28.785408 2 AACGCAG 28575 0.0 28.406656 6 ACGCAGA 32925 0.0 24.587711 7 CGCAGAG 33360 0.0 24.25427 8 GTACATG 30880 0.0 22.435568 1 TACATGG 31250 0.0 21.68222 2 ACATGGG 31920 0.0 20.531364 3 GCAGAGT 40010 0.0 20.085457 9 GTGGTAT 7395 0.0 20.079845 1 GAGTACT 22370 0.0 19.869394 12-13 TGGTATC 6725 0.0 19.619797 2 CATGGGG 24045 0.0 18.5809 4 CAGAGTA 38700 0.0 18.514364 10-11 GTACTTT 24770 0.0 17.891596 14-15 AGAGTAC 35775 0.0 17.325235 10-11 >>END_MODULE