##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139106_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9932699 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.55726827119195 33.0 33.0 33.0 33.0 33.0 2 32.56467864374024 33.0 33.0 33.0 33.0 33.0 3 32.558850620561444 33.0 33.0 33.0 33.0 33.0 4 36.454794613226476 37.0 37.0 37.0 37.0 37.0 5 36.48421783444761 37.0 37.0 37.0 37.0 37.0 6 36.484218337835465 37.0 37.0 37.0 37.0 37.0 7 36.459738989372376 37.0 37.0 37.0 37.0 37.0 8 36.442460100723885 37.0 37.0 37.0 37.0 37.0 9 36.48009830963367 37.0 37.0 37.0 37.0 37.0 10-11 36.43389636593236 37.0 37.0 37.0 37.0 37.0 12-13 36.366214208242894 37.0 37.0 37.0 37.0 37.0 14-15 38.38608458788492 40.0 37.0 40.0 37.0 40.0 16-17 38.345079620352934 40.0 37.0 40.0 37.0 40.0 18-19 38.350377425108725 40.0 37.0 40.0 37.0 40.0 20-21 38.34509917136032 40.0 37.0 40.0 37.0 40.0 22-23 38.34250166377332 40.0 37.0 40.0 37.0 40.0 24-25 38.34212677432447 40.0 37.0 40.0 37.0 40.0 26-27 38.189427564509174 40.0 37.0 40.0 37.0 40.0 28-29 38.107934355964524 40.0 37.0 40.0 33.0 40.0 30-31 38.07300755922931 40.0 37.0 40.0 33.0 40.0 32-33 37.99587286976491 40.0 37.0 40.0 33.0 40.0 34-35 37.95620823867951 40.0 37.0 40.0 33.0 40.0 36-37 37.91782865453609 40.0 37.0 40.0 33.0 40.0 38-39 37.8648049545464 40.0 37.0 40.0 33.0 40.0 40-41 37.8329979325342 40.0 37.0 40.0 33.0 40.0 42-43 37.734228024965475 40.0 37.0 40.0 33.0 40.0 44-45 37.67939050315376 40.0 37.0 40.0 33.0 40.0 46-47 37.639608391356376 40.0 37.0 40.0 33.0 40.0 48-49 37.6085808703584 40.0 37.0 40.0 33.0 40.0 50-51 37.53935427823659 40.0 37.0 40.0 33.0 40.0 52-53 37.4348731583806 40.0 37.0 40.0 33.0 40.0 54-55 37.2173773785263 40.0 37.0 40.0 33.0 40.0 56-57 37.02874870960328 37.0 37.0 40.0 33.0 40.0 58-59 36.96053720357068 37.0 37.0 40.0 33.0 40.0 60-61 36.818586509019966 37.0 37.0 40.0 33.0 40.0 62-63 36.626625504882256 37.0 37.0 40.0 33.0 40.0 64-65 36.481846431960804 37.0 37.0 40.0 33.0 40.0 66-67 36.25912230137622 37.0 37.0 40.0 33.0 40.0 68-69 36.03614116999378 37.0 37.0 40.0 33.0 40.0 70-71 35.774411155044305 37.0 33.0 37.0 33.0 40.0 72-73 35.567692731172954 37.0 33.0 37.0 33.0 40.0 74-75 35.39346196476244 37.0 33.0 37.0 33.0 40.0 76-77 33.5957540131954 35.0 33.0 37.0 27.0 37.0 78-79 34.84961114496091 37.0 33.0 37.0 33.0 37.0 80-81 34.92376374239626 37.0 33.0 37.0 33.0 37.0 82-83 34.81710525495353 37.0 33.0 37.0 33.0 37.0 84-85 34.673348992468185 37.0 33.0 37.0 33.0 37.0 86-87 34.55522182182369 37.0 33.0 37.0 33.0 37.0 88-89 34.48203349931849 37.0 33.0 37.0 33.0 37.0 90-91 34.40281985319933 37.0 33.0 37.0 30.0 37.0 92-93 34.3366673354086 37.0 33.0 37.0 27.0 37.0 94-95 34.32537360039569 37.0 33.0 37.0 27.0 37.0 96-97 34.3417778126894 37.0 33.0 37.0 33.0 37.0 98-99 34.35878731315508 37.0 33.0 37.0 33.0 37.0 100 34.36722273574544 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 4.0 19 9.0 20 111.0 21 486.0 22 1950.0 23 5400.0 24 12145.0 25 23801.0 26 40419.0 27 63202.0 28 91847.0 29 126120.0 30 167947.0 31 220234.0 32 288718.0 33 380728.0 34 516473.0 35 742762.0 36 1270430.0 37 2875082.0 38 3047573.0 39 57257.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.72598001811995 19.912382324280642 14.30797409646663 24.05366356113278 2 14.773547451704719 20.62014564218648 41.67487608352977 22.93143082257904 3 18.398725260878237 25.767779734390423 30.03746514416676 25.796029860564584 4 12.683531434910089 17.799452092527922 38.233052265049004 31.28396420751298 5 13.705378568302534 37.525389624713284 35.170702343844304 13.598529463139878 6 30.627801227823497 37.28939508681327 18.488169075512012 13.59463460985122 7 27.06242281176546 32.30738191099922 22.620206250083687 18.009989027151633 8 24.65593692107251 36.833442753072454 20.667333219299206 17.84328710655583 9 25.78193500074854 16.759855503524268 20.747110125858036 36.71109936986915 10-11 24.642925730394346 26.535166529281845 28.39662473807741 20.4252830022464 12-13 25.485667352584745 23.971341853295684 28.52620336942533 22.01678742469424 14-15 22.475995204981405 25.35468276497703 26.133103046786065 26.036218983255495 16-17 22.20516296728613 28.47407336112773 26.789652037175394 22.531111634410745 18-19 22.22970815888008 27.58816108290405 28.461503766498915 21.720626991716955 20-21 23.006639358827922 26.73155676327104 28.404041909159233 21.857761968741805 22-23 22.752142933701826 26.73357462581634 28.235383967030263 22.278898473451576 24-25 22.52950279924239 26.888890656882097 28.301503245179514 22.280103298695998 26-27 22.49112715147058 27.013166974769177 28.25858447465584 22.237121399104403 28-29 22.388785325148433 27.02981375961842 28.270700757944144 22.310700157289006 30-31 22.703005163288665 26.909286809849203 28.193216052453586 22.19449197440855 32-33 22.532362318632057 27.00800100160818 28.18318424062425 22.276452439135515 34-35 22.551019505283023 27.062366091574084 28.231535331599922 22.155079071542964 36-37 22.58385264505427 27.016042891303897 28.065432263415392 22.33467220022644 38-39 22.43816509412436 27.10541970876552 28.141258752773098 22.315156444337024 40-41 22.67535014289866 26.985778366657826 28.023538361876433 22.31533312856708 42-43 22.596988082100538 27.069748836843488 27.835124868814624 22.498138212241347 44-45 22.6107914544439 27.174647285912783 27.723465196769858 22.49109606287346 46-47 22.758065074885348 27.127714359882475 27.397721781953706 22.71649878327847 48-49 22.647898371619846 27.262149959726052 27.37197948619657 22.717972182457537 50-51 22.642111192781204 27.44732279160934 27.27354873296184 22.637017282647616 52-53 22.79276145886917 27.334544994462124 27.215510384292056 22.657183162376647 54-55 22.73153419858946 27.23033779537979 27.231389055954796 22.806738950075953 56-57 22.758554406236062 27.408375990314564 27.13218177184002 22.700887831609354 58-59 22.661395864689744 27.401112059140992 27.194747104924932 22.742744971244328 60-61 22.855891100075397 27.407934619138786 27.19074236368656 22.545431917099258 62-63 22.702295362848375 27.47832571350947 27.169446874613918 22.64993204902824 64-65 22.683327229565887 27.433527042258277 27.117614344166423 22.765531384009417 66-67 22.71387757254293 27.396525217730566 27.156223131172748 22.733374078553762 68-69 22.659368248446228 27.480684567132467 27.118535852953872 22.741411331467432 70-71 22.67963815802058 27.288828161874477 27.03666406431795 22.99486961578699 72-73 22.711283879612658 27.35346893509756 26.94076783260458 22.99447935268521 74-75 22.61756602124786 27.433554227046148 27.084408360843064 22.864471390862924 76-77 22.795457737233683 27.2259595259933 26.998366731696148 22.98021600507687 78-79 22.695990363340464 27.248483414705504 26.860045577559568 23.19548064439446 80-81 22.853505187754767 27.45212186717787 26.822100551759302 22.872272393308062 82-83 22.903194703199446 27.30920280248631 26.87838298986926 22.909219504444977 84-85 22.85126559643253 27.291123060496215 26.840037391361648 23.01757395170961 86-87 22.71893722903574 27.408406054390777 26.962639416080524 22.910017300492957 88-89 22.850404962978036 27.380171242103252 26.92317702342534 22.846246771493377 90-91 22.90495489369199 27.42151468526256 26.883513243912866 22.790017177132587 92-93 22.80883188238461 27.269057158064054 26.938690058198787 22.98342090135255 94-95 22.796358808631656 27.425183243707803 26.995647232713427 22.782810714947114 96-97 23.01376504790581 27.40402855676191 27.004863055274765 22.57734334005751 98-99 23.962287283115455 29.381236801407084 27.248408278036184 19.408067637441274 100 22.805352802974767 30.408591437745912 21.092286528043328 25.69376923123599 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1698.0 1 1554.5 2 2188.5 3 3118.0 4 4266.5 5 7142.5 6 9599.5 7 11178.5 8 12130.5 9 11853.5 10 10925.0 11 9888.0 12 10486.0 13 13743.0 14 21901.0 15 33825.0 16 44171.0 17 50523.5 18 52048.5 19 49186.5 20 43673.0 21 37519.5 22 32981.5 23 32198.0 24 36121.5 25 44682.0 26 56710.5 27 70813.0 28 87126.0 29 107019.5 30 128355.5 31 149551.5 32 172314.5 33 195006.0 34 217801.5 35 240400.5 36 264443.5 37 287507.5 38 307428.0 39 324996.5 40 340827.0 41 353406.5 42 361637.0 43 372047.0 44 382806.0 45 392982.0 46 400393.5 47 403495.0 48 406396.5 49 407029.0 50 405705.0 51 399752.0 52 386793.5 53 370082.5 54 350896.0 55 329357.5 56 304753.5 57 275971.5 58 245734.5 59 214159.5 60 179015.5 61 145138.0 62 115779.5 63 89650.5 64 66783.5 65 49372.5 66 36813.5 67 27949.5 68 21233.0 69 15074.5 70 10346.0 71 7235.0 72 4881.0 73 3157.0 74 1963.0 75 1196.0 76 793.0 77 512.5 78 350.0 79 260.5 80 197.5 81 145.0 82 98.5 83 64.0 84 49.0 85 37.0 86 26.5 87 19.5 88 13.5 89 11.0 90 9.0 91 7.0 92 7.5 93 5.0 94 2.5 95 3.0 96 3.0 97 2.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.0067757011462847E-5 7 0.0 8 0.0 9 0.0 10-11 0.0013742488320646784 12-13 2.61761682298034E-4 14-15 0.007299123833310563 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 159.0 20-21 601.0 22-23 1292.0 24-25 3349.0 26-27 3657.0 28-29 5218.0 30-31 11091.0 32-33 13967.0 34-35 19660.0 36-37 27136.0 38-39 32730.0 40-41 37915.0 42-43 47566.0 44-45 58343.0 46-47 56967.0 48-49 50928.0 50-51 43776.0 52-53 42112.0 54-55 47069.0 56-57 51662.0 58-59 34536.0 60-61 57444.0 62-63 56580.0 64-65 61288.0 66-67 67102.0 68-69 65732.0 70-71 66511.0 72-73 65373.0 74-75 67889.0 76-77 66728.0 78-79 74368.0 80-81 77002.0 82-83 76508.0 84-85 77539.0 86-87 83808.0 88-89 90451.0 90-91 97516.0 92-93 105378.0 94-95 128293.0 96-97 386348.0 98-99 649425.0 100-101 6921682.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.34817313408985 #Duplication Level Percentage of deduplicated Percentage of total 1 88.4913865608192 72.87104021386011 2 7.871296743561904 12.963738140572667 3 1.9368927210459286 4.7849873140454555 4 0.7448842195858547 2.4535941871722944 5 0.34131318312724357 1.4053258548554786 6 0.19336540912745134 0.9553972913382889 7 0.1099141046398501 0.6335858003132591 8 0.0714108982132048 0.4704445607777486 9 0.047219176808813906 0.3499571652391267 >10 0.18426371047359616 2.4664427458744473 >50 0.005728916024612272 0.32725915892642404 >100 0.0022754945141827744 0.2843681211680753 >500 4.886205823465331E-5 0.033859445856615586 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.0067757011462845E-5 0.0 0.0 0.0 3 0.0 1.0067757011462845E-5 0.0 0.0 0.0 4 0.0 2.013551402292569E-5 0.0 1.0067757011462845E-5 0.0 5 0.0 2.013551402292569E-5 0.0 1.0067757011462845E-5 0.0 6 0.0 2.013551402292569E-5 0.0 1.0067757011462845E-5 0.0 7 0.0 2.013551402292569E-5 0.0 2.013551402292569E-5 0.0 8 0.0 5.033878505731423E-5 0.0 2.013551402292569E-5 1.0067757011462845E-5 9 0.0 1.4094859816047984E-4 0.0 2.013551402292569E-5 1.0067757011462845E-5 10-11 0.0 1.4094859816047984E-4 0.0 3.0203271034388538E-5 1.0067757011462845E-5 12-13 0.0 1.5101635517194268E-4 0.0 3.0203271034388538E-5 1.0067757011462845E-5 14-15 0.0 2.1142289724071977E-4 0.0 3.0203271034388538E-5 1.5101635517194269E-5 16-17 0.0 2.2652453275791404E-4 0.0 4.027102804585138E-5 2.013551402292569E-5 18-19 0.0 2.3659228976937688E-4 0.0 4.027102804585138E-5 3.0203271034388538E-5 20-21 0.0 2.5169392528657115E-4 0.0 5.033878505731423E-5 3.0203271034388538E-5 22-23 0.0 3.121004673553482E-4 0.0 6.54404205745085E-5 3.523714954011996E-5 24-25 0.0 3.423037383897368E-4 0.0 7.550817758597134E-5 5.5372663563045654E-5 26-27 0.0 3.7754088792985675E-4 0.0 1.2584696264328557E-4 6.0406542068777076E-5 28-29 0.0 3.92642523447051E-4 0.0 2.1142289724071977E-4 6.0406542068777076E-5 30-31 0.0 4.530490655158281E-4 0.0 9.211997665488504E-4 6.0406542068777076E-5 32-33 0.0 4.832523365502166E-4 0.0 0.0027283621501064314 6.0406542068777076E-5 34-35 0.0 5.48692757124725E-4 0.0 0.005119454440328857 7.047429908023992E-5 36-37 0.0 6.493703272393535E-4 0.0 0.009503962618820926 7.047429908023992E-5 38-39 0.0 6.745397197680106E-4 0.0 0.02136881425682989 7.047429908023992E-5 40-41 0.0 8.154883179284906E-4 0.0 0.03480423598862706 7.047429908023992E-5 42-43 0.0 8.406577104571476E-4 0.0 0.04392058996250667 7.550817758597134E-5 44-45 0.0 9.363014020660448E-4 0.0 0.0557804077220099 8.55759345974342E-5 46-47 1.0067757011462845E-5 9.967079441348219E-4 0.0 0.06736839604220363 1.0067757011462847E-4 48-49 1.0067757011462845E-5 0.001011809579652016 0.0 0.0787852324932025 1.0067757011462847E-4 50-51 1.5101635517194269E-5 0.0011879953273526158 0.0 0.09012152688810968 1.0067757011462847E-4 52-53 2.013551402292569E-5 0.0011980630843640787 0.0 0.1184823983894005 1.1577920563182273E-4 54-55 2.013551402292569E-5 0.0011980630843640787 0.0 0.15335207479860208 1.3591471965474842E-4 56-57 2.013551402292569E-5 0.0011980630843640787 0.0 0.18907751055377797 1.4598247666621126E-4 58-59 2.013551402292569E-5 0.001213164719881273 0.0 0.31631382366464544 1.5101635517194268E-4 60-61 2.013551402292569E-5 0.0012232324768927357 0.0 0.427391386772115 1.5101635517194268E-4 62-63 2.013551402292569E-5 0.0012333002339041986 0.0 0.43275246738071893 1.560502336776741E-4 64-65 2.013551402292569E-5 0.0013490794395360213 0.0 0.43686514611990157 1.6108411218340553E-4 66-67 2.013551402292569E-5 0.0013490794395360213 0.0 0.4406858599057517 1.711518691948684E-4 68-69 2.013551402292569E-5 0.0013994182245933356 0.0 0.44465255616826804 1.8121962620633124E-4 70-71 2.013551402292569E-5 0.0014094859816047983 0.0 0.4481863388792915 1.963212617235255E-4 72-73 2.013551402292569E-5 0.0014145198601105298 0.0 0.4515439358426144 2.1142289724071977E-4 74-75 2.013551402292569E-5 0.0014447231311449185 0.0 0.45439311107685837 2.1142289724071977E-4 76-77 2.013551402292569E-5 0.0014950619162022328 0.0 0.45692011808673555 2.1142289724071977E-4 78-79 2.013551402292569E-5 0.001510163551719427 0.0 0.45846551878799513 2.1142289724071977E-4 80-81 2.013551402292569E-5 0.001510163551719427 0.0 0.4590242793021313 2.1142289724071977E-4 82-83 2.013551402292569E-5 0.001510163551719427 0.0 0.4595175993956929 2.466600467808397E-4 84-85 2.013551402292569E-5 0.0015202313087308897 0.0 0.45972398841442796 2.5672780379230257E-4 86-87 2.013551402292569E-5 0.0015202313087308897 0.0 0.45980956434902537 2.667955608037654E-4 88 2.013551402292569E-5 0.0016410443928684439 0.0 0.4598246659845426 2.7182943930949684E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13000 0.0 49.40044 1 GTATCAA 22790 0.0 37.892956 1 TCAACGC 27175 0.0 31.278421 4 ATCAACG 27760 0.0 30.650858 3 CAACGCA 28155 0.0 30.206184 5 TATCAAC 28750 0.0 29.808868 2 AACGCAG 28840 0.0 29.549536 6 ACGCAGA 33360 0.0 25.466976 7 CGCAGAG 34075 0.0 24.919737 8 GTACATG 31145 0.0 23.097065 1 TACATGG 31410 0.0 22.316038 2 ACATGGG 32060 0.0 21.3987 3 GTGGTAT 6300 0.0 21.083302 1 GCAGAGT 40245 0.0 21.080664 9 GAGTACT 22800 0.0 20.26786 12-13 TGGTATC 6485 0.0 19.129913 2 CAGAGTA 38685 0.0 19.085993 10-11 CATGGGG 24385 0.0 19.037493 4 AGAGTAC 35855 0.0 18.531965 10-11 GTACTTT 24935 0.0 18.48889 14-15 >>END_MODULE