##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139104_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9616948 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.55516916593497 33.0 33.0 33.0 33.0 33.0 2 32.564404736305114 33.0 33.0 33.0 33.0 33.0 3 32.558166894528284 33.0 33.0 33.0 33.0 33.0 4 36.45330472827762 37.0 37.0 37.0 37.0 37.0 5 36.47824923250079 37.0 37.0 37.0 37.0 37.0 6 36.47738346926697 37.0 37.0 37.0 37.0 37.0 7 36.45372918726398 37.0 37.0 37.0 37.0 37.0 8 36.43486894178902 37.0 37.0 37.0 37.0 37.0 9 36.47511913342986 37.0 37.0 37.0 37.0 37.0 10-11 36.42817388635147 37.0 37.0 37.0 37.0 37.0 12-13 36.3581470441558 37.0 37.0 37.0 37.0 37.0 14-15 38.374861130579056 40.0 37.0 40.0 37.0 40.0 16-17 38.32721976868337 40.0 37.0 40.0 37.0 40.0 18-19 38.329745777974466 40.0 37.0 40.0 37.0 40.0 20-21 38.32534576102722 40.0 37.0 40.0 37.0 40.0 22-23 38.317324586277515 40.0 37.0 40.0 37.0 40.0 24-25 38.31484012455558 40.0 37.0 40.0 37.0 40.0 26-27 38.15801230662147 40.0 37.0 40.0 35.0 40.0 28-29 38.07390407976516 40.0 37.0 40.0 33.0 40.0 30-31 38.046620071228276 40.0 37.0 40.0 33.0 40.0 32-33 37.96595238519683 40.0 37.0 40.0 33.0 40.0 34-35 37.91859463065956 40.0 37.0 40.0 33.0 40.0 36-37 37.87698821228267 40.0 37.0 40.0 33.0 40.0 38-39 37.81066119781204 40.0 37.0 40.0 33.0 40.0 40-41 37.78678102573298 40.0 37.0 40.0 33.0 40.0 42-43 37.694833613013486 40.0 37.0 40.0 33.0 40.0 44-45 37.64209051001222 40.0 37.0 40.0 33.0 40.0 46-47 37.602084063603755 40.0 37.0 40.0 33.0 40.0 48-49 37.578537026566934 40.0 37.0 40.0 33.0 40.0 50-51 37.490851953402725 40.0 37.0 40.0 33.0 40.0 52-53 37.389703290727724 40.0 37.0 40.0 33.0 40.0 54-55 37.169849457700394 40.0 37.0 40.0 33.0 40.0 56-57 36.97275656465564 37.0 37.0 40.0 33.0 40.0 58-59 36.906175609821545 37.0 37.0 40.0 33.0 40.0 60-61 36.75934473903516 37.0 37.0 40.0 33.0 40.0 62-63 36.57165180390307 37.0 37.0 40.0 33.0 40.0 64-65 36.423226107738486 37.0 37.0 40.0 33.0 40.0 66-67 36.20339798356207 37.0 37.0 40.0 33.0 40.0 68-69 35.9843576295855 37.0 37.0 40.0 33.0 40.0 70-71 35.7242547137214 37.0 33.0 37.0 33.0 40.0 72-73 35.51903003882987 37.0 33.0 37.0 33.0 40.0 74-75 35.34614922443373 37.0 33.0 37.0 33.0 40.0 76-77 33.55173820248429 35.0 33.0 37.0 27.0 37.0 78-79 34.81654240955025 37.0 33.0 37.0 30.0 37.0 80-81 34.90188491699284 37.0 33.0 37.0 33.0 37.0 82-83 34.79778695999765 37.0 33.0 37.0 33.0 37.0 84-85 34.65523822760243 37.0 33.0 37.0 33.0 37.0 86-87 34.53978371412228 37.0 33.0 37.0 33.0 37.0 88-89 34.47304118514367 37.0 33.0 37.0 30.0 37.0 90-91 34.39616910876657 37.0 33.0 37.0 30.0 37.0 92-93 34.33145270673644 37.0 33.0 37.0 27.0 37.0 94-95 34.32551727484281 37.0 33.0 37.0 27.0 37.0 96-97 34.33872285155785 37.0 33.0 37.0 33.0 37.0 98-99 34.35040854865292 37.0 33.0 37.0 33.0 37.0 100 34.36076745502358 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 13.0 20 91.0 21 559.0 22 2039.0 23 5556.0 24 12333.0 25 23594.0 26 40403.0 27 62977.0 28 90762.0 29 124435.0 30 166195.0 31 216157.0 32 282770.0 33 372211.0 34 503518.0 35 721254.0 36 1232637.0 37 2767322.0 38 2929796.0 39 62324.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.32368189991253 20.07374896900763 14.3060043581394 24.29656477294044 2 14.690284277298785 20.462916093546518 41.81512679490416 23.031672834250532 3 18.440184973444797 25.66896483167009 30.174489869343162 25.71636032554195 4 12.758631948514227 17.907458790460343 37.86740866229078 31.466500598734648 5 13.836863836635075 37.39449355450399 35.12536409680077 13.643278512060167 6 30.654052684287436 37.14035233842923 18.378410528829992 13.82718444845334 7 26.98922776747883 32.20875271447865 22.450750487576723 18.351269030465797 8 24.66031842950591 36.86687294139471 20.619888971012426 17.852919658086954 9 25.572385334723656 16.852539911830654 20.670507940772893 36.9045668126728 10-11 24.780386949880732 26.38749621625736 28.2768875013635 20.555229332498406 12-13 25.520028924030434 23.750553321818206 28.402496350961542 22.326921403189818 14-15 22.62591788108395 25.188734159280074 25.754605166521728 26.43074279311425 16-17 22.406271719468588 28.445781343519794 26.441288857962007 22.70665807904961 18-19 22.47034090233201 27.477121639838337 28.021155984206214 22.03138147362344 20-21 23.183520194212335 26.66299145932837 27.885397378370584 22.26809096808871 22-23 23.00825168620464 26.774464032452666 27.73899971027376 22.478284571068933 24-25 22.864484917372327 27.031991914521253 27.73063028270572 22.372892885400695 26-27 22.81811215979042 27.06693588759227 27.74781935160055 22.367132601016763 28-29 22.624543731466 26.872396366527056 27.837473210959455 22.665586691047483 30-31 23.02642544910554 26.901348879267594 27.728506273517876 22.343719398108984 32-33 22.845776200822954 27.010610009686253 27.80269154222756 22.340922247263233 34-35 22.837781729103263 26.999935008265663 27.869172004781678 22.2931112578494 36-37 22.896800532399332 26.87141810376951 27.670546813321582 22.56123455050957 38-39 22.662130246300467 26.852533909512232 27.932779807037093 22.552556037150204 40-41 22.792454771368927 26.716889652957672 27.883040107472045 22.607615468201352 42-43 22.807854909387526 26.827997623296802 27.72066044855937 22.643487018756304 44-45 22.738950357640782 26.971970081422942 27.57325770920312 22.715821851733164 46-47 22.952238410755964 26.858853633881147 27.225677810994362 22.963230144368524 48-49 22.74203739760143 27.061298515947346 27.19384256604326 23.002821520407963 50-51 22.66359198419596 27.139633144259918 27.29442143839995 22.902353433144174 52-53 22.845588532102912 27.123159399826292 27.244806585094405 22.786445482976397 54-55 22.829164683388104 27.02827675636554 27.11812769813795 23.024430862108407 56-57 22.937900271173703 27.202390460886317 26.940852484363347 22.91885678357663 58-59 22.699674891394327 27.383458695459577 27.15910721303848 22.75775920010761 60-61 22.953517224357995 27.446582672951592 26.899246532555015 22.700653570135398 62-63 22.85492702032249 27.609918191541805 26.80722732272052 22.72792746541518 64-65 22.79969705999974 27.476277428430766 26.802967885734784 22.92105762583471 66-67 22.929830821688448 27.410985086026102 26.660969776936007 22.998214315349447 68-69 22.794528123255475 27.323993039696248 26.82848264561542 23.052996191432854 70-71 22.851225949697465 27.15795819640192 26.838609879647397 23.152205974253217 72-73 22.935070514892395 27.136168657740615 26.728579434153023 23.200181393213963 74-75 22.77964591096386 27.330953869163423 26.751555658674437 23.137844561198285 76-77 23.029683954235296 27.23925257230927 26.660444570536164 23.07061890291927 78-79 22.930837190389376 27.212582586531287 26.63235926414103 23.224220958938304 80-81 22.980045572870754 27.261392282536832 26.66182799592507 23.09673414866734 82-83 22.94059445042757 27.279973129777947 26.745440920362057 23.033991499432425 84-85 23.035250723031034 27.259753936384268 26.696806341653552 23.008188998931153 86-87 22.941397395522518 27.25812030972199 26.789711575168766 23.01077071958673 88-89 22.957455135513232 27.21836133831537 26.77221711468199 23.051966411489406 90-91 22.95287807008726 27.29902346685612 26.73208783826872 23.0160106247879 92-93 23.10514815908724 27.191783571385447 26.7698398064035 22.933228463123818 94-95 22.84737461246686 27.29666290642394 26.87763985810536 22.978322623003834 96-97 22.92896628784576 27.365353990172814 26.937881271946296 22.767798450035134 98-99 24.150235125939034 29.269174310083518 26.99215865606373 19.588431907913716 100 23.017610973197876 30.242377755705512 20.867327328536483 25.872683942560133 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1593.0 1 1393.5 2 1839.0 3 2631.5 4 3547.0 5 5820.5 6 7845.0 7 9175.0 8 9812.5 9 9565.0 10 8806.5 11 7923.5 12 8498.0 13 11209.5 14 17994.0 15 27848.0 16 36269.5 17 41614.5 18 43381.0 19 41626.5 20 37792.5 21 33485.5 22 30944.5 23 31797.5 24 36115.5 25 45077.5 26 57521.0 27 70869.0 28 86210.0 29 105012.5 30 124399.5 31 144509.0 32 167501.0 33 191247.5 34 212366.0 35 230599.0 36 253006.0 37 276699.5 38 294591.5 39 306705.0 40 320322.0 41 335957.5 42 346223.0 43 356074.5 44 368255.0 45 378278.0 46 385030.0 47 390765.5 48 405937.0 49 414352.5 50 408018.0 51 405294.0 52 399548.5 53 385226.0 54 367037.0 55 344352.5 56 320186.0 57 294145.5 58 263803.0 59 228949.0 60 190053.0 61 153783.0 62 122571.5 63 94594.0 64 69642.5 65 51071.0 66 37945.0 67 28510.0 68 21246.5 69 15246.0 70 10757.5 71 7536.5 72 5166.5 73 3383.0 74 2159.5 75 1368.5 76 925.0 77 609.0 78 418.5 79 295.5 80 199.5 81 143.0 82 117.5 83 95.0 84 70.5 85 50.5 86 37.0 87 29.5 88 21.0 89 13.5 90 8.0 91 4.5 92 4.0 93 2.5 94 1.5 95 2.0 96 1.5 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.0398309318091353E-5 7 0.0 8 0.0 9 0.0 10-11 0.0015285514697594288 12-13 3.2234758886083196E-4 14-15 0.007387998770503905 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 158.0 20-21 570.0 22-23 1192.0 24-25 2923.0 26-27 3796.0 28-29 5916.0 30-31 14904.0 32-33 18963.0 34-35 26293.0 36-37 39040.0 38-39 43825.0 40-41 47637.0 42-43 54604.0 44-45 65694.0 46-47 63589.0 48-49 60024.0 50-51 51605.0 52-53 49880.0 54-55 57324.0 56-57 64619.0 58-59 65613.0 60-61 69715.0 62-63 68673.0 64-65 72064.0 66-67 79161.0 68-69 70699.0 70-71 69376.0 72-73 66350.0 74-75 69310.0 76-77 66587.0 78-79 73839.0 80-81 76852.0 82-83 75296.0 84-85 75792.0 86-87 80713.0 88-89 87231.0 90-91 92591.0 92-93 99323.0 94-95 121712.0 96-97 348412.0 98-99 608174.0 100-101 6506909.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.30583378869805 #Duplication Level Percentage of deduplicated Percentage of total 1 88.92569526660596 74.08029189424289 2 7.626271841837615 12.70625868967105 3 1.8554869606569566 4.637186650247549 4 0.6995562973934111 2.331084825459701 5 0.3336763709806717 1.3898594150065895 6 0.1799725155670992 0.8995656281019985 7 0.09784211094672587 0.570557304244431 8 0.07054874985506135 0.4701697943540941 9 0.041210609462851794 0.30897757640189505 >10 0.16371141263985103 2.141545543652451 >50 0.004406403145334519 0.24595755605921668 >100 0.0015982982172594025 0.20775872948639867 >500 2.3162691300466154E-5 0.010786393071707355 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.0398309318091353E-5 0.0 2 0.0 1.0398309318091353E-5 0.0 1.0398309318091353E-5 0.0 3 0.0 1.0398309318091353E-5 0.0 1.0398309318091353E-5 0.0 4 0.0 1.0398309318091353E-5 0.0 1.0398309318091353E-5 0.0 5 0.0 1.0398309318091353E-5 0.0 2.0796618636182705E-5 0.0 6 6.238985590854811E-5 1.0398309318091353E-5 0.0 2.0796618636182705E-5 1.0398309318091353E-5 7 6.238985590854811E-5 1.0398309318091353E-5 0.0 2.0796618636182705E-5 1.0398309318091353E-5 8 6.238985590854811E-5 2.0796618636182705E-5 0.0 2.0796618636182705E-5 1.0398309318091353E-5 9 6.238985590854811E-5 3.1194927954274056E-5 0.0 2.0796618636182705E-5 1.0398309318091353E-5 10-11 6.238985590854811E-5 3.1194927954274056E-5 0.0 4.159323727236541E-5 1.0398309318091353E-5 12-13 6.238985590854811E-5 3.6394082613319734E-5 0.0 4.159323727236541E-5 1.5597463977137028E-5 14-15 6.238985590854811E-5 5.1991546590456765E-5 0.0 5.7190701249502435E-5 3.6394082613319734E-5 16-17 7.798731988568514E-5 5.1991546590456765E-5 0.0 7.278816522663947E-5 5.1991546590456765E-5 18-19 8.318647454473082E-5 6.238985590854811E-5 0.0 1.0398309318091353E-4 8.318647454473082E-5 20-21 8.318647454473082E-5 7.278816522663947E-5 0.0 1.3517802113518758E-4 1.2997886647614192E-4 22-23 8.83856292037765E-5 1.0398309318091353E-4 0.0 1.559746397713703E-4 1.4037717579423324E-4 24-25 9.358478386282218E-5 1.0918224783995921E-4 0.0 2.8075435158846654E-4 1.6117379443041595E-4 26-27 9.358478386282218E-5 1.1438140249900488E-4 0.0 6.031019404492985E-4 1.6637294908946164E-4 28-29 9.358478386282218E-5 1.1438140249900488E-4 0.0 0.0015389497790775203 1.76771258407553E-4 30-31 9.358478386282218E-5 1.3517802113518758E-4 0.0 0.005682676042336924 1.8716956772564435E-4 32-33 9.358478386282218E-5 1.3517802113518758E-4 0.0 0.015805430163498856 1.8716956772564435E-4 34-35 9.358478386282218E-5 1.5077548511232462E-4 0.0 0.028808515965772094 1.975678770437357E-4 36-37 9.878393852186785E-5 1.6637294908946164E-4 0.0 0.04827415100923911 1.975678770437357E-4 38-39 1.0398309318091353E-4 1.8716956772564435E-4 0.0 0.08806848076957471 2.0796618636182706E-4 40-41 1.1438140249900488E-4 2.1836449567991841E-4 0.0 0.13022322674511705 2.1836449567991841E-4 42-43 1.1438140249900488E-4 2.3396195965705543E-4 0.0 0.160835849377578 2.2356365033896408E-4 44-45 1.1958055715805056E-4 2.9115266090655787E-4 0.0 0.19689198693805976 2.2876280499800977E-4 46-47 1.3517802113518758E-4 3.327458981789233E-4 0.0 0.23075408123242425 2.2876280499800977E-4 48-49 1.4037717579423324E-4 3.37945052837969E-4 0.0 0.262822467169418 2.2876280499800977E-4 50-51 1.559746397713703E-4 4.0553406340556274E-4 0.0 0.2909446947201961 2.2876280499800977E-4 52-53 1.559746397713703E-4 4.159323727236541E-4 0.0 0.34256190217520155 2.3916111431610112E-4 54-55 1.559746397713703E-4 4.263306820417455E-4 0.0 0.39699185230075074 2.4955942363419245E-4 56-57 1.6117379443041595E-4 4.3672899135983683E-4 0.0 0.4485726656731429 2.5475857829323817E-4 58-59 1.76771258407553E-4 4.3672899135983683E-4 0.0 0.48084381864183934 2.5995773295228383E-4 60-61 1.9236872238469004E-4 4.419281460188825E-4 0.0 0.5039800568745927 2.5995773295228383E-4 62-63 2.2876280499800977E-4 4.627247646550652E-4 0.0 0.5207369323406968 2.5995773295228383E-4 64-65 2.2876280499800977E-4 5.719070124950244E-4 0.0 0.5262480362792852 2.5995773295228383E-4 66-67 2.3916111431610112E-4 5.719070124950244E-4 0.0 0.5311716357414016 2.651568876113295E-4 68-69 2.3916111431610112E-4 5.875044764721614E-4 0.0 0.5359028664811332 2.7035604227037516E-4 70-71 2.4955942363419245E-4 5.979027857902527E-4 0.0 0.5398906181046211 2.8075435158846654E-4 72-73 2.4955942363419245E-4 6.031019404492985E-4 0.0 0.543181683003797 2.9115266090655787E-4 74-75 2.5475857829323817E-4 6.290977137445268E-4 0.0 0.5457864594879789 2.9115266090655787E-4 76-77 2.5995773295228383E-4 6.498943323807096E-4 0.0 0.5481780706311399 2.963518155656036E-4 78-79 2.5995773295228383E-4 6.654917963578466E-4 0.0 0.5497534144928308 3.0155097022464925E-4 80-81 2.5995773295228383E-4 6.706909510168922E-4 0.0 0.5502421350307811 3.119492795427406E-4 82-83 2.5995773295228383E-4 6.758901056759379E-4 0.0 0.5508400378165713 3.53542516815106E-4 84-85 2.5995773295228383E-4 6.758901056759379E-4 0.0 0.551016809074979 3.743391354512887E-4 86-87 2.7035604227037516E-4 6.758901056759379E-4 0.0 0.5510999955495236 3.8473744476938003E-4 88 2.7035604227037516E-4 7.07085033630212E-4 0.0 0.5510999955495236 3.8473744476938003E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11880 0.0 46.064156 1 GTATCAA 20615 0.0 34.604004 1 TCAACGC 23220 0.0 29.82759 4 ATCAACG 23855 0.0 29.051739 3 CAACGCA 23930 0.0 28.997446 5 AACGCAG 24695 0.0 28.081646 6 TATCAAC 25060 0.0 27.948263 2 CTTATAC 13215 0.0 26.777817 1 ACGCAGA 28275 0.0 24.511082 7 CGCAGAG 29120 0.0 23.799824 8 TATACAC 17010 0.0 23.346802 3 GTACATG 28840 0.0 22.935135 1 TTATACA 16735 0.0 22.205292 2 TACATGG 29325 0.0 22.187014 2 ACATGGG 29710 0.0 21.34619 3 GCAGAGT 34395 0.0 20.014626 9 CATGGGG 23425 0.0 19.409405 4 TACACAT 20025 0.0 19.227179 5 GAGTACT 18545 0.0 19.166565 12-13 GTGGTAT 6440 0.0 18.338585 1 >>END_MODULE