##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139103_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11885824 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.56118406262788 33.0 33.0 33.0 33.0 33.0 2 32.57069068160525 33.0 33.0 33.0 33.0 33.0 3 32.564256630419564 33.0 33.0 33.0 33.0 33.0 4 36.46122027383209 37.0 37.0 37.0 37.0 37.0 5 36.488172633214155 37.0 37.0 37.0 37.0 37.0 6 36.48736292914988 37.0 37.0 37.0 37.0 37.0 7 36.46314979929031 37.0 37.0 37.0 37.0 37.0 8 36.446422982537854 37.0 37.0 37.0 37.0 37.0 9 36.4835520027892 37.0 37.0 37.0 37.0 37.0 10-11 36.43838563485376 37.0 37.0 37.0 37.0 37.0 12-13 36.370420679289886 37.0 37.0 37.0 37.0 37.0 14-15 38.39807564035947 40.0 37.0 40.0 37.0 40.0 16-17 38.356034087329576 40.0 37.0 40.0 37.0 40.0 18-19 38.36388390068707 40.0 37.0 40.0 37.0 40.0 20-21 38.35986126769379 40.0 37.0 40.0 37.0 40.0 22-23 38.35344039920294 40.0 37.0 40.0 37.0 40.0 24-25 38.351163670499346 40.0 37.0 40.0 37.0 40.0 26-27 38.19969902433739 40.0 37.0 40.0 37.0 40.0 28-29 38.12893652116297 40.0 37.0 40.0 33.0 40.0 30-31 38.10038544956009 40.0 37.0 40.0 33.0 40.0 32-33 38.02082254411846 40.0 37.0 40.0 33.0 40.0 34-35 37.97708736662558 40.0 37.0 40.0 33.0 40.0 36-37 37.94144159223359 40.0 37.0 40.0 33.0 40.0 38-39 37.88696775247228 40.0 37.0 40.0 33.0 40.0 40-41 37.8607166257047 40.0 37.0 40.0 33.0 40.0 42-43 37.76645575999033 40.0 37.0 40.0 33.0 40.0 44-45 37.71491076827378 40.0 37.0 40.0 33.0 40.0 46-47 37.68197359945741 40.0 37.0 40.0 33.0 40.0 48-49 37.65944479869526 40.0 37.0 40.0 33.0 40.0 50-51 37.58172664023908 40.0 37.0 40.0 33.0 40.0 52-53 37.48227070160611 40.0 37.0 40.0 33.0 40.0 54-55 37.266261257115445 40.0 37.0 40.0 33.0 40.0 56-57 37.07057543669792 37.0 37.0 40.0 33.0 40.0 58-59 37.004948986652465 37.0 37.0 40.0 33.0 40.0 60-61 36.86011201485407 37.0 37.0 40.0 33.0 40.0 62-63 36.67517068522211 37.0 37.0 40.0 33.0 40.0 64-65 36.53103884835289 37.0 37.0 40.0 33.0 40.0 66-67 36.31170620157625 37.0 37.0 40.0 33.0 40.0 68-69 36.09440748495986 37.0 37.0 40.0 33.0 40.0 70-71 35.83703864232521 37.0 35.0 37.0 33.0 40.0 72-73 35.63302781758077 37.0 33.0 37.0 33.0 40.0 74-75 35.45524659020364 37.0 33.0 37.0 33.0 40.0 76-77 33.657522784159156 35.0 33.0 37.0 27.0 37.0 78-79 34.91078589106155 37.0 33.0 37.0 33.0 37.0 80-81 34.988079424797675 37.0 33.0 37.0 33.0 37.0 82-83 34.88037452015982 37.0 33.0 37.0 33.0 37.0 84-85 34.733194927379046 37.0 33.0 37.0 33.0 37.0 86-87 34.615147505655884 37.0 33.0 37.0 33.0 37.0 88-89 34.544014293566256 37.0 33.0 37.0 33.0 37.0 90-91 34.467425157267314 37.0 33.0 37.0 33.0 37.0 92-93 34.40173710264396 37.0 33.0 37.0 30.0 37.0 94-95 34.39557669370049 37.0 33.0 37.0 33.0 37.0 96-97 34.40538344413557 37.0 33.0 37.0 33.0 37.0 98-99 34.415061600208574 37.0 33.0 37.0 33.0 37.0 100 34.42458554623211 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 21.0 20 98.0 21 521.0 22 2271.0 23 6173.0 24 14136.0 25 27763.0 26 47256.0 27 74095.0 28 106885.0 29 146749.0 30 194283.0 31 256284.0 32 335467.0 33 443153.0 34 603765.0 35 870380.0 36 1486405.0 37 3413100.0 38 3774322.0 39 82696.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.06797307447931 20.253421218419522 14.461967466454157 24.216638240647008 2 14.537999216545694 20.603325440457475 41.94200587186888 22.91666947112796 3 18.174760117598915 25.967177370285814 30.283419979969416 25.57464253214586 4 12.577419958431152 18.064082052704126 38.25779348575244 31.10070450311228 5 13.635924610695902 37.55382883004157 35.2836118051218 13.526634754140732 6 30.249180052571873 37.403594181067646 18.653996446018084 13.693229320342395 7 26.798217776066686 32.375416294234206 22.719577540438088 18.106788389261023 8 24.512570605117492 36.8615840180706 20.86956697322794 17.756278403583966 9 25.49126589793017 16.949392822912404 20.909656747399254 36.64968453175817 10-11 24.520235152661733 26.551101726490888 28.47637028900546 20.45229283184192 12-13 25.36588987725461 23.924491298742847 28.54854528929837 22.161073534704173 14-15 22.442317590088102 25.35990688727398 26.041024660686386 26.156750861951533 16-17 22.12931135443365 28.609728698658166 26.73342210014215 22.52753784676603 18-19 22.184360125137307 27.668401450332762 28.317767451377374 21.829470973152556 20-21 22.867042053253854 26.668182516127807 28.313536844186523 22.151238586431816 22-23 22.630657610761943 26.85026191200115 28.118855110362578 22.400225366874327 24-25 22.44779865978192 27.028948740828362 28.23414692275564 22.289105676634076 26-27 22.336952408835856 27.142262354170494 28.191072269916017 22.32971296707763 28-29 22.143798617108676 26.99111006855086 28.238413822900426 22.626677491440038 30-31 22.363389851421417 26.836861742129418 28.292256098501422 22.50749230794774 32-33 22.24557654382422 27.027724178521794 28.270385197610437 22.456314080043548 34-35 22.35490299803497 27.209978311511644 28.279171312840695 22.15594737761269 36-37 22.459772406809584 27.07198401875154 27.931987927725288 22.536255646713585 38-39 22.39649704136772 27.076301349702366 28.091312332741055 22.435889276188863 40-41 22.56191823358207 26.99336306877413 28.04182132254856 22.40289737509524 42-43 22.579422639173423 27.00080025906765 27.974083435153098 22.44569366660583 44-45 22.531390040269837 27.155444818457035 27.762191196689006 22.550973944584126 46-47 22.760840104859785 27.04287013060779 27.36048198841915 22.83580777611328 48-49 22.610444532252853 27.168348451046548 27.396173258948597 22.825033757752003 50-51 22.537304956176467 27.326516128129757 27.377334721857117 22.758844193836662 52-53 22.639213943385435 27.354649315649105 27.413509669160884 22.59262707180457 54-55 22.629667655827138 27.230656233161373 27.285512733786117 22.854163377225376 56-57 22.762858752746375 27.403468119376146 27.10181125760584 22.731861870271644 58-59 22.537515153267385 27.586658726994777 27.366105247526782 22.50972087221105 60-61 22.768187320356986 27.680282327993417 27.065383846595836 22.486146505053764 62-63 22.652645088742286 27.828724038552526 26.97750275841097 22.541128114294217 64-65 22.64996410349343 27.666497424183735 26.995311924575944 22.688226547746893 66-67 22.74004798694441 27.534814355354676 26.94041426455594 22.784723393144976 68-69 22.682273369148135 27.421203403307242 27.09761359107355 22.798909636471073 70-71 22.72557018117697 27.269093879677804 27.08005731672141 22.92527862242382 72-73 22.75885892983764 27.279695393098113 27.007394123934585 22.954051553129656 74-75 22.656199712373155 27.38283343057667 27.031807563591766 22.929159293458408 76-77 22.803460142428765 27.321913253624313 26.940714169555807 22.933912434391114 78-79 22.699522559197945 27.308449650668248 26.958534806805474 23.03349298332833 80-81 22.732075861960887 27.38467907310102 26.96440579907315 22.91883926586494 82-83 22.741424971129042 27.339136327797682 27.062529896184284 22.856908804888995 84-85 22.814023312312116 27.34124828750667 26.95324171406958 22.891486686111634 86-87 22.717514450752486 27.34481465495533 27.044692730900127 22.89297816339206 88-89 22.719393148721267 27.295190080754793 27.0361574245375 22.94925934598644 90-91 22.742393241233145 27.361130694647116 27.01887509077358 22.877600973346155 92-93 22.788316810343808 27.32802970265765 27.045127483065563 22.838526003932984 94-95 22.650304219007232 27.380897935227193 27.109441056838605 22.85935678892697 96-97 22.70581823771452 27.487188748306004 27.15154071390513 22.655452300074348 98-99 23.908193906424138 29.36629175447977 27.318954034896425 19.406560304199665 100 22.823342617255843 30.3383666126628 21.048193884271633 25.790096885809728 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1664.0 1 1501.5 2 2263.0 3 3365.0 4 4618.5 5 7834.5 6 10496.0 7 11897.0 8 12440.5 9 11889.0 10 10788.0 11 9528.0 12 10260.0 13 14103.0 14 23365.0 15 36555.5 16 47944.0 17 55258.0 18 57749.0 19 55391.0 20 49787.5 21 43238.0 22 38700.5 23 39135.0 24 44948.5 25 55432.5 26 70148.5 27 88275.0 28 109812.5 29 136236.5 30 163114.0 31 190014.5 32 220870.5 33 250059.0 34 277273.5 35 304256.0 36 333059.5 37 360202.5 38 379756.5 39 395549.5 40 413226.0 41 429555.0 42 440925.0 43 454676.5 44 468092.5 45 479116.0 46 494632.0 47 510689.5 48 515570.5 49 512341.0 50 506879.0 51 491730.0 52 468817.0 53 442022.5 54 415450.5 55 387038.5 56 357683.5 57 326966.5 58 292087.0 59 254005.0 60 211162.5 61 170735.5 62 135545.0 63 104942.0 64 78243.5 65 58035.5 66 43573.0 67 33207.0 68 25109.0 69 17945.0 70 12812.0 71 9281.0 72 6739.5 73 4620.5 74 3034.0 75 1962.0 76 1272.0 77 829.5 78 576.0 79 402.5 80 284.5 81 214.0 82 163.0 83 108.5 84 65.5 85 50.0 86 43.5 87 35.5 88 27.5 89 19.5 90 19.0 91 20.0 92 18.0 93 12.0 94 4.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 8.413383876456526E-6 7 0.0 8 0.0 9 0.0 10-11 0.0015438559413297722 12-13 3.491554308729458E-4 14-15 0.007361710891899459 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 179.0 20-21 698.0 22-23 1491.0 24-25 3123.0 26-27 4209.0 28-29 7171.0 30-31 16595.0 32-33 21456.0 34-35 30256.0 36-37 43523.0 38-39 51821.0 40-41 56913.0 42-43 68072.0 44-45 81303.0 46-47 79178.0 48-49 72841.0 50-51 63736.0 52-53 62234.0 54-55 72398.0 56-57 78380.0 58-59 80259.0 60-61 84654.0 62-63 84972.0 64-65 89518.0 66-67 94087.0 68-69 83534.0 70-71 83104.0 72-73 79771.0 74-75 82914.0 76-77 81181.0 78-79 89068.0 80-81 92399.0 82-83 90089.0 84-85 92304.0 86-87 97522.0 88-89 105781.0 90-91 113248.0 92-93 120847.0 94-95 149201.0 96-97 423043.0 98-99 757035.0 100-101 8095716.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.9401063731584 #Duplication Level Percentage of deduplicated Percentage of total 1 86.8931982838138 69.4625151391202 2 8.556368257541624 13.67993977351587 3 2.3617604342890783 5.66398141034957 4 0.9434120582937494 3.016658411748906 5 0.46146093367707114 1.844461806260103 6 0.2531503909304388 1.2142121507631545 7 0.14424052290102224 0.8071421920819395 8 0.09560188201844902 0.6113939694423164 9 0.059793711762384856 0.4301924110857917 >10 0.22477555036440694 2.804948695302949 >50 0.004783565234524351 0.2544065324547797 >100 0.0014111280898100353 0.17831648928101843 >500 2.164057376575271E-5 0.012472937833123365 >1k 2.1640509874420347E-5 0.019358080760288825 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.413383876456526E-6 2 0.0 8.413383876456526E-6 0.0 0.0 8.413383876456526E-6 3 0.0 8.413383876456526E-6 0.0 0.0 8.413383876456526E-6 4 8.413383876456526E-6 3.36535355058261E-5 0.0 8.413383876456526E-6 8.413383876456526E-6 5 8.413383876456526E-6 3.36535355058261E-5 0.0 8.413383876456526E-6 1.682676775291305E-5 6 1.9350782915850007E-4 3.36535355058261E-5 0.0 1.682676775291305E-5 1.682676775291305E-5 7 1.9350782915850007E-4 3.36535355058261E-5 0.0 1.682676775291305E-5 1.682676775291305E-5 8 1.9350782915850007E-4 3.36535355058261E-5 0.0 1.682676775291305E-5 5.048030325873915E-5 9 1.9350782915850007E-4 5.048030325873915E-5 0.0 3.36535355058261E-5 5.8893687135195673E-5 10-11 1.9350782915850007E-4 5.048030325873915E-5 0.0 4.2066919382282626E-5 5.8893687135195673E-5 12-13 1.9350782915850007E-4 5.8893687135195673E-5 0.0 5.048030325873915E-5 5.8893687135195673E-5 14-15 2.1033459691141313E-4 1.0516729845570655E-4 0.0 5.8893687135195673E-5 6.730707101165219E-5 16-17 3.786022744405436E-4 1.1778737427039135E-4 0.0 6.310037907342394E-5 7.572045488810872E-5 18-19 3.8701565831700014E-4 1.2199406620861961E-4 0.0 7.151376294988046E-5 8.413383876456525E-5 20-21 3.8701565831700014E-4 1.3040745008507614E-4 0.0 7.992714682633699E-5 1.009606065174783E-4 22-23 3.912223502552284E-4 1.4723421783798918E-4 0.0 8.834053070279352E-5 1.0516729845570656E-4 24-25 3.9963573413168493E-4 1.682676775291305E-4 0.0 1.1358068233216308E-4 1.0937399039393483E-4 26-27 4.038424260699132E-4 1.7668106140558703E-4 0.0 1.6406098559090224E-4 1.0937399039393483E-4 28-29 4.038424260699132E-4 1.7668106140558703E-4 0.0 3.5336212281117407E-4 1.1358068233216308E-4 30-31 4.0804911800814146E-4 2.019212130349566E-4 0.0 0.0012409741217773375 1.1778737427039135E-4 32-33 4.16462501884598E-4 2.1874798078786963E-4 0.0 0.0034873476167912297 1.1778737427039135E-4 34-35 4.2066919382282626E-4 2.902617437377501E-4 0.0 0.006019776163604644 1.346141420233044E-4 36-37 4.2066919382282626E-4 3.5336212281117407E-4 0.0 0.010659757371470416 1.4302752589976094E-4 38-39 4.2066919382282626E-4 3.8701565831700014E-4 0.0 0.024205305412565423 1.5144090977621744E-4 40-41 4.290825776992828E-4 4.290825776992828E-4 0.0 0.03908016810614056 1.5985429365267397E-4 42-43 4.290825776992828E-4 4.4170265351396753E-4 0.0 0.047724920039199634 1.7247436946735877E-4 44-45 4.3328926963751105E-4 4.837695728962502E-4 0.0 0.0585992186995197 1.8509444528204354E-4 46-47 4.374959615757393E-4 5.216298003403046E-4 0.0 0.07002459400374766 1.8509444528204354E-4 48-49 4.459093454521958E-4 5.216298003403046E-4 0.0 0.08123963471106421 1.8509444528204354E-4 50-51 5.048030325873915E-4 5.889368713519567E-4 0.0 0.09197511253742273 1.8509444528204354E-4 52-53 5.216298003403046E-4 6.141770229813263E-4 0.0 0.11729519131361865 1.9350782915850007E-4 54-55 5.216298003403046E-4 6.225904068577828E-4 0.0 0.14777688109802062 2.1033459691141313E-4 56-57 5.216298003403046E-4 6.225904068577828E-4 0.0 0.17924293679596803 2.481948243554675E-4 58-59 5.216298003403046E-4 6.267970987960111E-4 0.0 0.2084668256908398 2.818483598612936E-4 60-61 5.510766439079024E-4 6.394171746106959E-4 0.0 0.22026659657757006 2.860550517995219E-4 62-63 6.057636391048698E-4 6.478305584871524E-4 0.0 0.234401081490017 2.986751276142066E-4 64-65 6.057636391048698E-4 6.73070710116522E-4 0.0 0.23990343454521956 3.0708851149066315E-4 66-67 6.225904068577828E-4 6.814840939929785E-4 0.0 0.2443246677722975 3.3232866312003274E-4 68-69 6.225904068577828E-4 6.856907859312068E-4 0.0 0.24864073370091966 3.5756881474940233E-4 70-71 6.604506343018372E-4 6.898974778694351E-4 0.0 0.25274646503263043 3.7439558250231534E-4 72-73 7.487911650046307E-4 6.898974778694351E-4 0.0 0.2560276847444485 4.038424260699132E-4 74-75 7.487911650046307E-4 6.898974778694351E-4 0.0 0.2587620345042969 4.0804911800814146E-4 76-77 7.572045488810872E-4 7.151376294988047E-4 0.0 0.2613365299704926 4.1225580994636973E-4 78-79 7.656179327575437E-4 7.319643972517177E-4 0.0 0.2629603130586487 4.1225580994636973E-4 80-81 7.69824624695772E-4 7.319643972517177E-4 0.0 0.26356607669775356 4.2066919382282626E-4 82-83 7.782380085722285E-4 7.319643972517177E-4 0.0 0.2640919131900321 4.290825776992828E-4 84-85 7.992714682633699E-4 7.361710891899459E-4 0.0 0.2643232812466346 4.3328926963751105E-4 86-87 8.32925003769196E-4 7.572045488810872E-4 0.0 0.2643821749337698 4.417026535139676E-4 88 8.49751771522109E-4 7.908580843869133E-4 0.0 0.26439900170152275 4.4590934545219585E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14770 0.0 46.746204 1 GTATCAA 26285 0.0 36.11782 1 TCAACGC 30530 0.0 30.414007 4 ATCAACG 31155 0.0 29.776031 3 CAACGCA 31635 0.0 29.311514 5 TATCAAC 32280 0.0 29.033876 2 AACGCAG 32325 0.0 28.726091 6 CTTATAC 11395 0.0 28.506985 1 ACGCAGA 37735 0.0 24.561708 7 CGCAGAG 38030 0.0 24.34868 8 TATACAC 16335 0.0 23.523304 3 GTACATG 36475 0.0 22.36543 1 TACATGG 36425 0.0 21.967499 2 TTATACA 15770 0.0 21.395956 2 ACATGGG 37105 0.0 21.050629 3 GCAGAGT 44830 0.0 20.648825 9 GAGTACT 24530 0.0 19.265696 12-13 CATGGGG 28195 0.0 18.44297 4 CAGAGTA 43325 0.0 18.407495 10-11 AGAGTAC 39915 0.0 18.219526 10-11 >>END_MODULE