##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139102_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3310949 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.563108039417095 33.0 33.0 33.0 33.0 33.0 2 32.56990941267896 33.0 33.0 33.0 33.0 33.0 3 32.562230949495145 33.0 33.0 33.0 33.0 33.0 4 36.45876544761034 37.0 37.0 37.0 37.0 37.0 5 36.48774656450462 37.0 37.0 37.0 37.0 37.0 6 36.48724761390164 37.0 37.0 37.0 37.0 37.0 7 36.46335899465682 37.0 37.0 37.0 37.0 37.0 8 36.44640675528376 37.0 37.0 37.0 37.0 37.0 9 36.483193791266494 37.0 37.0 37.0 37.0 37.0 10-11 36.43836495216326 37.0 37.0 37.0 37.0 37.0 12-13 36.370614588143766 37.0 37.0 37.0 37.0 37.0 14-15 38.39738380144182 40.0 37.0 40.0 37.0 40.0 16-17 38.35662796376508 40.0 37.0 40.0 37.0 40.0 18-19 38.36237963798295 40.0 37.0 40.0 37.0 40.0 20-21 38.35753085117405 40.0 37.0 40.0 37.0 40.0 22-23 38.352213493511634 40.0 37.0 40.0 37.0 40.0 24-25 38.34827848579632 40.0 37.0 40.0 37.0 40.0 26-27 38.19958367445108 40.0 37.0 40.0 37.0 40.0 28-29 38.12381131014406 40.0 37.0 40.0 33.0 40.0 30-31 38.08775540055825 40.0 37.0 40.0 33.0 40.0 32-33 38.00931300842011 40.0 37.0 40.0 33.0 40.0 34-35 37.97021652903659 40.0 37.0 40.0 33.0 40.0 36-37 37.932882469339646 40.0 37.0 40.0 33.0 40.0 38-39 37.884499137627174 40.0 37.0 40.0 33.0 40.0 40-41 37.854116334849934 40.0 37.0 40.0 33.0 40.0 42-43 37.75840510753166 40.0 37.0 40.0 33.0 40.0 44-45 37.70673023858042 40.0 37.0 40.0 33.0 40.0 46-47 37.672802827179325 40.0 37.0 40.0 33.0 40.0 48-49 37.64486321629255 40.0 37.0 40.0 33.0 40.0 50-51 37.57635237486794 40.0 37.0 40.0 33.0 40.0 52-53 37.4754363421883 40.0 37.0 40.0 33.0 40.0 54-55 37.26096619219965 40.0 37.0 40.0 33.0 40.0 56-57 37.07509685569092 37.0 37.0 40.0 33.0 40.0 58-59 37.00636861172505 37.0 37.0 40.0 33.0 40.0 60-61 36.865967069543515 37.0 37.0 40.0 33.0 40.0 62-63 36.680616915574234 37.0 37.0 40.0 33.0 40.0 64-65 36.53339978565207 37.0 37.0 40.0 33.0 40.0 66-67 36.3118564501463 37.0 37.0 40.0 33.0 40.0 68-69 36.09258838758261 37.0 37.0 40.0 33.0 40.0 70-71 35.82907237167892 37.0 35.0 37.0 33.0 40.0 72-73 35.61886318792444 37.0 33.0 37.0 33.0 40.0 74-75 35.444092921032635 37.0 33.0 37.0 33.0 40.0 76-77 33.645787209347105 35.0 33.0 37.0 27.0 37.0 78-79 34.900533411831475 37.0 33.0 37.0 33.0 37.0 80-81 34.978140164709345 37.0 33.0 37.0 33.0 37.0 82-83 34.8747309707348 37.0 33.0 37.0 33.0 37.0 84-85 34.725910116678236 37.0 33.0 37.0 33.0 37.0 86-87 34.60479540299986 37.0 33.0 37.0 33.0 37.0 88-89 34.53262303325065 37.0 33.0 37.0 33.0 37.0 90-91 34.45399232598483 37.0 33.0 37.0 33.0 37.0 92-93 34.388773063685576 37.0 33.0 37.0 30.0 37.0 94-95 34.37939682773532 37.0 33.0 37.0 30.0 37.0 96-97 34.39298695715418 37.0 33.0 37.0 33.0 37.0 98-99 34.40216649968886 37.0 33.0 37.0 33.0 37.0 100 34.406205130992646 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 7.0 20 26.0 21 157.0 22 632.0 23 1683.0 24 3788.0 25 7441.0 26 12935.0 27 20273.0 28 29353.0 29 40937.0 30 54729.0 31 72239.0 32 94253.0 33 125371.0 34 170730.0 35 244126.0 36 415263.0 37 950815.0 38 1043791.0 39 22400.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.589767767489015 19.936882144666075 14.357545223438958 24.115804864405945 2 14.663499800208339 20.56398331716979 41.90408852567648 22.868428356945394 3 18.503244840074554 25.692573337734892 29.997834457734022 25.806347364456535 4 12.696027634373106 17.916404027969023 38.200044760580724 31.187523577077148 5 13.76599277125682 37.43793697818963 35.13340132995102 13.662668920602522 6 30.571636884662638 37.262802073605506 18.558249782237596 13.60731125949426 7 27.08066478825255 32.29723562640198 22.485849223289154 18.136250362056316 8 24.545137964976206 36.98818677062075 20.642178420748856 17.82449684365419 9 25.627093621798462 17.04233438811652 20.747918497083464 36.58265349300155 10-11 24.659068411030685 26.60867926357599 28.292410065385713 20.439842260007616 12-13 25.465309770836946 23.973361639498396 28.467841227542817 22.093487362121838 14-15 22.501988996935403 25.41330963653158 26.06105510775017 26.02364625878285 16-17 22.18933302808349 28.58962792842777 26.769605934733516 22.45143310875522 18-19 22.24652206965435 27.626052228530252 28.413092439660048 21.714333262155353 20-21 22.94024717713455 26.76082032351369 28.437859658708476 21.86107284064328 22-23 22.704015595884393 26.774404891897795 28.24949246620796 22.272087046009855 24-25 22.50590704437511 26.94586546168299 28.332045832803377 22.21618166113852 26-27 22.44347955375955 27.107859373092364 28.27388255545066 22.17477851769743 28-29 22.30427960747087 27.08027740659899 28.342030001995294 22.273412983934847 30-31 22.639498369058046 27.002720026648124 28.158984733148912 22.19879687114492 32-33 22.443435473007877 26.994168655439854 28.238756399951402 22.323639471600863 34-35 22.484354806105223 27.173511862665883 28.241798300381653 22.10033503084724 36-37 22.558055918159106 27.060367138567777 28.077063707030465 22.304513236242652 38-39 22.3884355781936 27.130370214707796 28.16093340802422 22.320260799074386 40-41 22.570389537086317 27.01906042986047 28.05283605760308 22.35771397545013 42-43 22.57751628825028 27.096287137449544 27.85832956096054 22.467867013339635 44-45 22.52730264025021 27.222783031814185 27.72323193792536 22.52668239001025 46-47 22.716701648557382 27.17018624772925 27.41051043164041 22.70260167207296 48-49 22.61127753171004 27.33686274953658 27.358430356123314 22.693429362630066 50-51 22.585301671242235 27.485846311501334 27.284800678111914 22.644051339144518 52-53 22.769101948293144 27.37969773216439 27.286391841490655 22.56480847805181 54-55 22.677344611925008 27.30355336086136 27.224938404157957 22.794163623055674 56-57 22.759376341857056 27.48907040327653 27.107653067465115 22.643900187401304 58-59 22.662661118612107 27.546687151325884 27.20984715413221 22.580804575929804 60-61 22.782016581287813 27.57524648973716 27.147098600952823 22.495638328022206 62-63 22.742638018110654 27.705659074033633 27.062777038105786 22.488925869749924 64-65 22.693599640013986 27.59432131664321 27.048599601122525 22.663479442220275 66-67 22.784886982302112 27.516733184623572 26.929689349159307 22.76869048391501 68-69 22.69515529554296 27.48407551752992 27.07035084719575 22.75041833973137 70-71 22.696631993603408 27.328890652915394 27.114608884931503 22.859868468549692 72-73 22.761949516167135 27.357938953477944 27.022657784824585 22.85745374553034 74-75 22.63787609790712 27.53407576968624 26.987000793438614 22.841047338968025 76-77 22.80238841736285 27.412826688408582 26.963584028300584 22.82120086592798 78-79 22.750164413182315 27.43729636477991 26.944931821467062 22.867607400570712 80-81 22.732419316617055 27.479144674736034 26.979150148806426 22.80928585984049 82-83 22.760197566858807 27.426168609039138 27.04664634445174 22.76698747965031 84-85 22.82026331882442 27.41251483866326 27.01843591496097 22.748785927551353 86-87 22.753296989821784 27.404925112320626 27.070305520814724 22.77147237704287 88-89 22.69276169236431 27.394805138575013 27.044060811338888 22.868372357721785 90-91 22.76247861312866 27.4713573658055 27.001143107396423 22.765020913669414 92-93 22.81963235044075 27.40252315446726 27.032160647109514 22.74568384798247 94-95 22.6429070747683 27.42818775127646 27.12707017145974 22.80183500249551 96-97 22.735883465444104 27.55339814121759 27.12090320340294 22.58981518993537 98-99 23.91181552610966 29.474601948011557 27.28135473144998 19.3322277944288 100 22.755903319593944 30.498529058876095 21.07986567304671 25.665701948483253 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 545.0 1 485.5 2 666.5 3 971.0 4 1319.5 5 2190.5 6 2904.0 7 3339.5 8 3607.5 9 3536.0 10 3279.5 11 3036.0 12 3362.0 13 4516.5 14 7243.0 15 11116.5 16 14433.0 17 16589.5 18 17337.5 19 16548.5 20 14753.5 21 12664.0 22 11230.5 23 11062.0 24 12176.0 25 14691.5 26 18728.0 27 23990.0 28 29710.5 29 36446.5 30 43863.0 31 51198.0 32 59148.0 33 67369.0 34 75090.0 35 81973.5 36 89786.0 37 97891.0 38 104696.0 39 110135.5 40 115431.0 41 120697.0 42 124704.5 43 128216.0 44 131427.5 45 135166.5 46 138548.0 47 141243.0 48 142192.0 49 140664.5 50 138982.0 51 135931.5 52 130212.0 53 123057.5 54 116072.5 55 108455.5 56 100018.0 57 90434.5 58 80131.0 59 69487.0 60 57947.5 61 47523.5 62 38131.0 63 29477.0 64 22021.0 65 16399.0 66 12379.0 67 9404.0 68 7129.0 69 5175.5 70 3703.5 71 2640.0 72 1793.5 73 1165.5 74 759.5 75 504.0 76 332.5 77 214.0 78 138.0 79 93.0 80 68.5 81 55.5 82 43.5 83 23.5 84 13.5 85 12.0 86 9.5 87 8.5 88 6.5 89 4.0 90 3.0 91 2.5 92 2.0 93 1.5 94 0.5 95 0.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 3.0202821003887403E-5 7 0.0 8 0.0 9 0.0 10-11 0.0017366622077235256 12-13 2.869267995369304E-4 14-15 0.00709766293591354 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 47.0 20-21 202.0 22-23 381.0 24-25 982.0 26-27 1162.0 28-29 1884.0 30-31 4383.0 32-33 5618.0 34-35 7679.0 36-37 11300.0 38-39 13741.0 40-41 15275.0 42-43 18413.0 44-45 22229.0 46-47 21978.0 48-49 19505.0 50-51 17498.0 52-53 17423.0 54-55 19376.0 56-57 20721.0 58-59 21285.0 60-61 21634.0 62-63 21461.0 64-65 22938.0 66-67 24025.0 68-69 23623.0 70-71 23460.0 72-73 22573.0 74-75 23471.0 76-77 23299.0 78-79 25377.0 80-81 25869.0 82-83 25718.0 84-85 26051.0 86-87 27576.0 88-89 30312.0 90-91 32712.0 92-93 34427.0 94-95 41992.0 96-97 118852.0 98-99 211660.0 100-101 2262837.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.65823655402957 #Duplication Level Percentage of deduplicated Percentage of total 1 92.34805840505858 82.79764065786081 2 5.846224840831569 10.483244194546415 3 1.1005176288713594 2.9601140970368425 4 0.3512568146538718 1.2597226631780705 5 0.13822311328187278 0.6196420293930288 6 0.07304793430417855 0.3929609384176352 7 0.04460697661847313 0.27995680031333914 8 0.02356969500538142 0.16905738322390534 9 0.020934663378980287 0.1689268501270435 >10 0.052195187849353564 0.721105775336406 >50 8.193796523617603E-4 0.052113342645202225 >100 5.453604940153156E-4 0.09551526792131487 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 3.0202821003887406E-5 0.0 0.0 0.0 0.0 7 3.0202821003887406E-5 0.0 0.0 3.0202821003887406E-5 0.0 8 3.0202821003887406E-5 0.0 0.0 3.0202821003887406E-5 0.0 9 3.0202821003887406E-5 6.040564200777481E-5 0.0 3.0202821003887406E-5 0.0 10-11 3.0202821003887406E-5 6.040564200777481E-5 0.0 3.0202821003887406E-5 0.0 12-13 3.0202821003887406E-5 6.040564200777481E-5 0.0 3.0202821003887406E-5 0.0 14-15 3.0202821003887406E-5 2.5672397853304294E-4 0.0 6.040564200777481E-5 0.0 16-17 6.040564200777481E-5 3.0202821003887407E-4 0.0 9.060846301166221E-5 0.0 18-19 6.040564200777481E-5 3.1712962054081777E-4 0.0 1.0570987351360592E-4 0.0 20-21 6.040564200777481E-5 3.6243385204664884E-4 0.0 1.2081128401554962E-4 0.0 22-23 6.040564200777481E-5 4.2283949405442367E-4 0.0 1.2081128401554962E-4 0.0 24-25 6.040564200777481E-5 4.5304231505831105E-4 0.0 1.2081128401554962E-4 0.0 26-27 6.040564200777481E-5 4.5304231505831105E-4 0.0 1.3591269451749334E-4 0.0 28-29 6.040564200777481E-5 4.5304231505831105E-4 0.0 1.6611551552138073E-4 0.0 30-31 7.550705250971852E-5 5.738535990738607E-4 0.0 3.6243385204664884E-4 0.0 32-33 9.060846301166221E-5 5.889550095758044E-4 0.0 0.0011024029666418904 0.0 34-35 9.060846301166221E-5 6.795634725874667E-4 0.0 0.0023709214488051612 0.0 36-37 9.060846301166221E-5 7.852733461010726E-4 0.0 0.004062279425022856 0.0 38-39 9.060846301166221E-5 8.305775776069036E-4 0.0 0.007173169988423259 0.0 40-41 9.060846301166221E-5 0.0010268959141321718 0.0 0.010465277477846986 0.0 42-43 9.060846301166221E-5 0.0010268959141321718 0.0 0.013832892019780432 0.0 44-45 1.0570987351360592E-4 0.0011477071981477213 0.0 0.016898478351675003 0.0 46-47 1.2081128401554962E-4 0.001268518482163271 0.0 0.020145281609592898 0.0 48-49 1.2081128401554962E-4 0.0012836198926652147 0.0 0.023724315898553554 0.0 50-51 1.2081128401554962E-4 0.0013591269451749333 0.0 0.028118826354619174 0.0 52-53 1.2081128401554962E-4 0.001374228355676877 0.0 0.03195458462211287 0.0 54-55 1.2081128401554962E-4 0.0013893297661788206 0.0 0.03585074853161435 0.0 56-57 1.2081128401554962E-4 0.0013893297661788206 0.0 0.03985262231462943 0.0 58-59 1.2081128401554962E-4 0.0013893297661788206 0.0 0.044398146875714486 0.0 60-61 1.2081128401554962E-4 0.001419532587182708 0.0 0.048671846047764554 0.0 62-63 1.2081128401554962E-4 0.001419532587182708 0.0 0.05302105227232434 3.0202821003887406E-5 64-65 1.2081128401554962E-4 0.0014799382291904829 0.0 0.05774779375943272 3.0202821003887406E-5 66-67 1.2081128401554962E-4 0.0014799382291904829 0.0 0.062459433836039156 3.0202821003887406E-5 68-69 1.2081128401554962E-4 0.001525242460696314 0.0 0.06729188519666114 3.0202821003887406E-5 70-71 1.2081128401554962E-4 0.0015705466922021451 0.0 0.07144477308469566 3.0202821003887406E-5 72-73 1.2081128401554962E-4 0.0015705466922021451 0.0 0.074570765058598 3.0202821003887406E-5 74-75 1.2081128401554962E-4 0.0015705466922021451 0.0 0.07703229497041483 3.0202821003887406E-5 76-77 1.2081128401554962E-4 0.0015705466922021451 0.0 0.07982605591327441 3.0202821003887406E-5 78-79 1.2081128401554962E-4 0.0015705466922021451 0.0 0.08195535479404847 3.0202821003887406E-5 80-81 1.2081128401554962E-4 0.0015705466922021451 0.0 0.08261981685613401 3.0202821003887406E-5 82-83 1.2081128401554962E-4 0.0015705466922021451 0.0 0.08281613519265926 3.0202821003887406E-5 84-85 1.2081128401554962E-4 0.0016007495132060324 0.0 0.08305775776069035 3.0202821003887406E-5 86-87 1.2081128401554962E-4 0.0016007495132060324 0.0 0.08314836622370203 3.0202821003887406E-5 88 1.2081128401554962E-4 0.0016611551552138072 0.0 0.08314836622370203 3.0202821003887406E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4420 0.0 48.87058 1 GTATCAA 7915 0.0 37.88886 1 TCAACGC 9035 0.0 32.422398 4 ATCAACG 9160 0.0 31.932503 3 CAACGCA 9275 0.0 31.630772 5 AACGCAG 9615 0.0 30.512262 6 TATCAAC 9715 0.0 30.331945 2 ACGCAGA 11085 0.0 26.426773 7 CGCAGAG 11300 0.0 25.88589 8 GCAGAGT 13130 0.0 21.949326 9 CTTATAC 1985 0.0 21.8954 1 GTACATG 10290 0.0 21.372164 1 TACATGG 10445 0.0 20.846956 2 GAGTACT 7360 0.0 20.227797 12-13 ACATGGG 10545 0.0 20.195885 3 GTGGTAT 2425 0.0 19.356436 1 CAGAGTA 12870 0.0 19.319233 10-11 TAGCGCG 165 0.005575674 19.260992 94 TGGTATC 2235 0.0 19.251787 2 GTACTTT 8010 0.0 18.722149 14-15 >>END_MODULE