##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139101_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8604804 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.56575629148555 33.0 33.0 33.0 33.0 33.0 2 32.57543390877933 33.0 33.0 33.0 33.0 33.0 3 32.569059911184496 33.0 33.0 33.0 33.0 33.0 4 36.46808933707264 37.0 37.0 37.0 37.0 37.0 5 36.496776916708384 37.0 37.0 37.0 37.0 37.0 6 36.4948357917275 37.0 37.0 37.0 37.0 37.0 7 36.4715127735623 37.0 37.0 37.0 37.0 37.0 8 36.45385263859583 37.0 37.0 37.0 37.0 37.0 9 36.490277640257695 37.0 37.0 37.0 37.0 37.0 10-11 36.4468452738726 37.0 37.0 37.0 37.0 37.0 12-13 36.375022952295026 37.0 37.0 37.0 37.0 37.0 14-15 38.40979463332343 40.0 37.0 40.0 37.0 40.0 16-17 38.3684724254033 40.0 37.0 40.0 37.0 40.0 18-19 38.375548007833764 40.0 37.0 40.0 37.0 40.0 20-21 38.36946935355108 40.0 37.0 40.0 37.0 40.0 22-23 38.363705423715885 40.0 37.0 40.0 37.0 40.0 24-25 38.36123687833668 40.0 37.0 40.0 37.0 40.0 26-27 38.20967702897883 40.0 37.0 40.0 37.0 40.0 28-29 38.13228043777006 40.0 37.0 40.0 35.0 40.0 30-31 38.09353025407543 40.0 37.0 40.0 33.0 40.0 32-33 38.01661528639052 40.0 37.0 40.0 33.0 40.0 34-35 37.981689182905086 40.0 37.0 40.0 33.0 40.0 36-37 37.941000512233764 40.0 37.0 40.0 33.0 40.0 38-39 37.889090174848036 40.0 37.0 40.0 33.0 40.0 40-41 37.855107601372765 40.0 37.0 40.0 33.0 40.0 42-43 37.75886740563449 40.0 37.0 40.0 33.0 40.0 44-45 37.709517016967794 40.0 37.0 40.0 33.0 40.0 46-47 37.67087458136122 40.0 37.0 40.0 33.0 40.0 48-49 37.64334622809612 40.0 37.0 40.0 33.0 40.0 50-51 37.57278722485658 40.0 37.0 40.0 33.0 40.0 52-53 37.471943507658025 40.0 37.0 40.0 33.0 40.0 54-55 37.253481230969854 40.0 37.0 40.0 33.0 40.0 56-57 37.061440839708396 37.0 37.0 40.0 33.0 40.0 58-59 37.00758730572748 37.0 37.0 40.0 33.0 40.0 60-61 36.869480183006516 37.0 37.0 40.0 33.0 40.0 62-63 36.68393264999585 37.0 37.0 40.0 33.0 40.0 64-65 36.53913840674192 37.0 37.0 40.0 33.0 40.0 66-67 36.31834215645897 37.0 37.0 40.0 33.0 40.0 68-69 36.09927513713579 37.0 37.0 40.0 33.0 40.0 70-71 35.839857672453334 37.0 35.0 37.0 33.0 40.0 72-73 35.63095903830444 37.0 33.0 37.0 33.0 40.0 74-75 35.45807686495097 37.0 33.0 37.0 33.0 40.0 76-77 33.656967761721575 35.0 33.0 37.0 27.0 37.0 78-79 34.91112383249796 37.0 33.0 37.0 33.0 37.0 80-81 34.98925630119528 37.0 33.0 37.0 33.0 37.0 82-83 34.88395220508804 37.0 33.0 37.0 33.0 37.0 84-85 34.73588723959206 37.0 33.0 37.0 33.0 37.0 86-87 34.615856249122025 37.0 33.0 37.0 33.0 37.0 88-89 34.54099915808097 37.0 33.0 37.0 33.0 37.0 90-91 34.46154567966383 37.0 33.0 37.0 33.0 37.0 92-93 34.39627442214095 37.0 33.0 37.0 30.0 37.0 94-95 34.38746704349609 37.0 33.0 37.0 33.0 37.0 96-97 34.39976137308501 37.0 33.0 37.0 33.0 37.0 98-99 34.40585763428872 37.0 33.0 37.0 33.0 37.0 100 34.41523996632051 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 20.0 20 91.0 21 430.0 22 1632.0 23 4450.0 24 9922.0 25 19537.0 26 33282.0 27 52485.0 28 76499.0 29 106143.0 30 141793.0 31 186159.0 32 244872.0 33 323318.0 34 440665.0 35 632906.0 36 1080756.0 37 2470813.0 38 2719033.0 39 59996.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.6471310677152 19.916827855695495 14.429672076203016 24.006369000386297 2 14.66286739360943 20.54025867410809 41.83927954663465 22.95759438564783 3 18.407740606293878 25.698842181646437 30.097652427643908 25.795764784415777 4 12.633175607486235 17.873399556805712 38.19388564806357 31.29953918764448 5 13.69201436778804 37.51619444208142 35.169877198829866 13.621913991300675 6 30.563647934339933 37.29521323205038 18.48969482628541 13.651444007324281 7 27.011399678598142 32.374671172056914 22.479477742898037 18.13445140644691 8 24.633355971850143 36.84437205077536 20.660075464821745 17.862196512552757 9 25.625766722867834 16.898455792833865 20.741448614053265 36.734328870245044 10-11 24.653957573884735 26.554475816747054 28.329898951183736 20.461667658184474 12-13 25.43840147527236 23.957440419190068 28.508647050292023 22.09551105524555 14-15 22.464835090503747 25.407046626439676 26.083253314031076 26.0448649690255 16-17 22.168883800258556 28.570534552559245 26.753061429406177 22.507520217776023 18-19 22.228827059860983 27.60815934912637 28.469974446832257 21.69303914418039 20-21 22.967977211235258 26.765287275130216 28.422112102713537 21.844623410920985 22-23 22.68117838277548 26.79347827034449 28.278337918149056 22.247005428730972 24-25 22.522024284094883 26.93532644078304 28.30654588070661 22.236103394415462 26-27 22.444438320119325 27.045949997366154 28.29703333427524 22.21257834823928 28-29 22.33283106819609 27.050871867713777 28.330726033417065 22.285571030673072 30-31 22.560681248510864 26.95288439781712 28.24909769883734 22.23733665483468 32-33 22.273420555891942 26.97934728479181 28.374446493077382 22.37278566623887 34-35 22.4261190188148 27.066186992115444 28.23539809165636 22.272295897413404 36-37 22.455077701574897 27.095223375662865 28.151326538747284 22.298372384014957 38-39 22.356849495967133 27.12118083651231 28.199235374848808 22.322734292671747 40-41 22.587864005999243 26.97000595942522 28.108972819479277 22.333157215096257 42-43 22.510395120577343 27.064682076438658 27.970868544145127 22.454054258838873 44-45 22.53319748785458 27.194804806778727 27.78146007995363 22.490537625413065 46-47 22.722335760658837 27.19342334759038 27.404154993128305 22.680085898622483 48-49 22.562113290412785 27.306326794054236 27.428957221264476 22.702602694268506 50-51 22.558496817700636 27.460871100570593 27.378677181858986 22.601954899869785 52-53 22.74048540493652 27.362077552175545 27.36787026675696 22.52956677613097 54-55 22.694131769825113 27.24991459415773 27.30734361841497 22.748610017602182 56-57 22.73900776165457 27.48879033016895 27.136978293395593 22.63522361478089 58-59 22.622785794410866 27.538091724563568 27.281896880793038 22.557225600232524 60-61 22.762051249848213 27.532213521993665 27.191803787001557 22.513931441156565 62-63 22.6898771878619 27.673742964536206 27.111813990681956 22.524565856919935 64-65 22.68865171445964 27.585110158512705 27.07521299768867 22.651025129338986 66-67 22.76537279171026 27.535249615932088 26.990909721069166 22.708467871288484 68-69 22.68598655564147 27.4913091184403 27.077643049303568 22.745061276614667 70-71 22.71330915538806 27.324237046625843 27.12444065727415 22.838013140711947 72-73 22.761211482824702 27.314809431746472 27.069417856980525 22.854561228448297 74-75 22.600753877410586 27.47902272546121 27.075528443000827 22.84469495412737 76-77 22.807848725011514 27.378025205381746 26.995683406677447 22.818442662929293 78-79 22.71170039787214 27.44114795247793 26.96113975308816 22.886011896561772 80-81 22.723494096850224 27.481645882605378 26.98652823392714 22.80833178661726 82-83 22.720706360752427 27.43165590950608 27.062720767040876 22.78491696270062 84-85 22.83984579258196 27.375832592620743 27.016358177359134 22.767963437438166 86-87 22.718235634462367 27.427921631036384 27.06358248603109 22.79026024847016 88-89 22.72306492931106 27.397388854492682 27.05361453653161 22.825931679664645 90-91 22.74599542334096 27.44069391716556 27.037807167753265 22.775503491740217 92-93 22.772752176542934 27.367860707649143 27.081866306285953 22.777520809521974 94-95 22.63143513383036 27.479421296649303 27.11237766286576 22.776765906654575 96-97 22.735691007192624 27.56274200164377 27.131853238633717 22.56971375252989 98-99 23.86490294082246 29.466840764626234 27.32675529657596 19.341500997975345 100 22.776759241944973 30.428141717742545 21.15772028320576 25.63737875710672 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1708.0 1 1524.0 2 1993.5 3 2805.5 4 3738.5 5 6079.5 6 8137.5 7 9437.5 8 10141.5 9 10003.0 10 9280.5 11 8414.5 12 9171.5 13 12431.5 14 19898.5 15 30266.5 16 39281.0 17 45153.5 18 46767.5 19 44175.0 20 39201.0 21 34018.5 22 30598.0 23 30424.5 24 33937.0 25 41371.5 26 52354.0 27 65149.5 28 80041.5 29 97912.5 30 116903.0 31 136047.5 32 156424.5 33 176771.5 34 196672.5 35 215343.5 36 235029.5 37 254508.5 38 271050.0 39 285109.5 40 298595.5 41 311090.5 42 320016.0 43 328989.5 44 336550.0 45 344265.0 46 350463.5 47 354331.5 48 361744.5 49 361979.0 50 354362.0 51 348042.5 52 338774.0 53 323662.0 54 306096.0 55 286553.0 56 264892.5 57 240484.5 58 213856.0 59 186037.5 60 156111.0 61 127974.0 62 102901.5 63 79834.5 64 59586.0 65 43940.0 66 32839.0 67 25021.5 68 18849.0 69 13708.0 70 9809.0 71 6896.5 72 4677.0 73 3102.0 74 2099.5 75 1408.0 76 948.0 77 622.0 78 419.0 79 307.5 80 232.5 81 169.5 82 120.5 83 84.5 84 55.5 85 42.0 86 34.5 87 25.0 88 18.0 89 13.0 90 9.0 91 5.5 92 4.0 93 2.0 94 0.5 95 1.0 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0017548336952242026 12-13 2.3242830400320566E-4 14-15 0.007321491576100978 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 130.0 20-21 516.0 22-23 1031.0 24-25 2728.0 26-27 3226.0 28-29 5152.0 30-31 12051.0 32-33 15341.0 34-35 21646.0 36-37 31410.0 38-39 38511.0 40-41 41175.0 42-43 50109.0 44-45 60140.0 46-47 59715.0 48-49 54442.0 50-51 47909.0 52-53 47288.0 54-55 53052.0 56-57 56140.0 58-59 58001.0 60-61 57955.0 62-63 56552.0 64-65 59532.0 66-67 64726.0 68-69 61402.0 70-71 61809.0 72-73 59337.0 74-75 61435.0 76-77 60253.0 78-79 65681.0 80-81 68478.0 82-83 67101.0 84-85 67589.0 86-87 71955.0 88-89 78083.0 90-91 83377.0 92-93 88326.0 94-95 107640.0 96-97 305745.0 98-99 547669.0 100-101 5850446.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.73394220813653 #Duplication Level Percentage of deduplicated Percentage of total 1 89.01054753778452 74.53204043443438 2 7.598642125463773 12.725285211877905 3 1.8389685852872664 4.619522677290677 4 0.6927530886897524 2.320277883714232 5 0.3272603591016405 1.3701399998015387 6 0.1813197621630054 0.9109571091690092 7 0.09682326948953475 0.5675175836287673 8 0.061605467104395864 0.41267748977797913 9 0.04419464412976441 0.3330532599723768 >10 0.14376168360497288 1.8840601122347347 >50 0.0033806047548567662 0.19331548563908996 >100 6.943055375379552E-4 0.10303164082420677 >500 4.856688900076531E-5 0.028121111635124228 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.1621415200160282E-5 2 0.0 1.1621415200160282E-5 0.0 1.1621415200160282E-5 1.1621415200160282E-5 3 0.0 1.1621415200160282E-5 0.0 2.3242830400320564E-5 1.1621415200160282E-5 4 0.0 1.1621415200160282E-5 0.0 3.486424560048085E-5 2.3242830400320564E-5 5 0.0 2.3242830400320564E-5 0.0 3.486424560048085E-5 2.3242830400320564E-5 6 1.1621415200160282E-5 2.3242830400320564E-5 0.0 4.648566080064113E-5 4.648566080064113E-5 7 1.1621415200160282E-5 2.3242830400320564E-5 0.0 5.8107076000801414E-5 4.648566080064113E-5 8 1.1621415200160282E-5 2.3242830400320564E-5 0.0 5.8107076000801414E-5 4.648566080064113E-5 9 1.1621415200160282E-5 1.1621415200160283E-4 0.0 6.97284912009617E-5 8.134990640112197E-5 10-11 1.1621415200160282E-5 1.1621415200160283E-4 0.0 8.134990640112197E-5 9.297132160128225E-5 12-13 2.3242830400320564E-5 1.278355672017631E-4 0.0 8.134990640112197E-5 9.87820292013624E-5 14-15 2.3242830400320564E-5 1.9175335080264466E-4 0.0 9.87820292013624E-5 1.5107839760208366E-4 16-17 2.3242830400320564E-5 1.975640584027248E-4 0.0 1.278355672017631E-4 1.859426432025645E-4 18-19 2.3242830400320564E-5 2.0337476600280495E-4 0.0 1.4526769000200354E-4 1.859426432025645E-4 20-21 2.9053538000400707E-5 2.2080688880304536E-4 0.0 1.5688910520216383E-4 1.859426432025645E-4 22-23 3.486424560048085E-5 2.2080688880304536E-4 0.0 1.6269981280224395E-4 1.975640584027248E-4 24-25 4.067495320056099E-5 2.847246724039269E-4 0.0 1.9175335080264466E-4 2.1499618120296524E-4 26-27 5.229636840072127E-5 2.9053538000400707E-4 0.0 2.3823901160328578E-4 2.2080688880304536E-4 28-29 5.8107076000801414E-5 2.9634608760408724E-4 0.0 4.648566080064113E-4 2.2080688880304536E-4 30-31 5.8107076000801414E-5 3.253996256044879E-4 0.0 0.0010807916136149063 2.2080688880304536E-4 32-33 6.391778360088156E-5 3.253996256044879E-4 0.0 0.002388200823632938 2.556711344035262E-4 34-35 7.553919880104183E-5 3.7769599400520914E-4 0.0 0.004189520179657782 2.672925496036865E-4 36-37 8.134990640112197E-5 4.2999236240593043E-4 0.0 0.007048388318897212 2.963460876040872E-4 38-39 8.134990640112197E-5 4.416137776060907E-4 0.0 0.011197233545354433 3.3121033320456807E-4 40-41 9.297132160128225E-5 5.694493448078538E-4 0.0 0.015520399999814057 3.370210408046482E-4 42-43 9.297132160128225E-5 5.75260052407934E-4 0.0 0.01934965630826687 3.428317484047283E-4 44-45 9.297132160128225E-5 6.449885436088957E-4 0.0 0.023568230025925053 3.486424560048085E-4 46-47 9.297132160128225E-5 7.147170348098574E-4 0.0 0.027670589591581633 3.602638712049687E-4 48-49 9.297132160128225E-5 7.205277424099376E-4 0.0 0.032173887981643744 3.71885286405129E-4 50-51 1.0459273680144255E-4 7.553919880104183E-4 0.0 0.03629367967010056 3.7769599400520914E-4 52-53 1.1040344440152268E-4 7.670134032105786E-4 0.0 0.03989631838215025 3.951281168054496E-4 54-55 1.1621415200160283E-4 7.78634818410739E-4 0.0 0.043539632047400495 4.067495320056099E-4 56-57 1.1621415200160283E-4 8.018776488110595E-4 0.0 0.04739794189385371 4.067495320056099E-4 58-59 1.1621415200160283E-4 8.076883564111396E-4 0.0 0.0516165156115119 4.067495320056099E-4 60-61 1.278355672017631E-4 8.367418944115403E-4 0.0 0.055893196405170875 4.067495320056099E-4 62-63 1.5107839760208368E-4 8.483633096117006E-4 0.0 0.05983866686562529 4.067495320056099E-4 64-65 1.5107839760208368E-4 9.06470385612502E-4 0.0 0.06390035147808132 4.067495320056099E-4 66-67 1.5107839760208368E-4 9.180918008126623E-4 0.0 0.06761339363453253 4.067495320056099E-4 68-69 1.5107839760208368E-4 9.239025084127425E-4 0.0 0.07171575320018911 4.241816548058503E-4 70-71 1.5107839760208368E-4 9.297132160128226E-4 0.0 0.07553338809344176 4.416137776060907E-4 72-73 1.6269981280224395E-4 9.413346312129829E-4 0.0 0.07863630595188456 4.648566080064113E-4 74-75 1.6269981280224395E-4 9.645774616133035E-4 0.0 0.08111747809711878 4.706673156064915E-4 76-77 1.6269981280224395E-4 9.87820292013624E-4 0.0 0.08383107854635619 4.93910146006812E-4 78-79 1.6269981280224395E-4 9.93630999613704E-4 0.0 0.08553942658077976 5.113422688070524E-4 80-81 1.859426432025645E-4 9.994417072137843E-4 0.0 0.08618441512438865 5.171529764071326E-4 82-83 1.859426432025645E-4 9.994417072137843E-4 0.0 0.08656211111839386 5.229636840072127E-4 84-85 1.859426432025645E-4 9.994417072137843E-4 0.0 0.08682940366799755 5.287743916072929E-4 86-87 1.859426432025645E-4 0.0010226845376141048 0.0 0.08691075357439867 5.34585099207373E-4 88 2.091854736028851E-4 0.0010575487832145858 0.0 0.08691656428199876 5.34585099207373E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11030 0.0 49.858 1 GTATCAA 19745 0.0 38.189228 1 TCAACGC 23915 0.0 30.751066 4 ATCAACG 24040 0.0 30.591173 3 CAACGCA 24565 0.0 29.921133 5 TATCAAC 24985 0.0 29.71165 2 AACGCAG 25335 0.0 28.99464 6 CTTATAC 5940 0.0 25.899458 1 ACGCAGA 28960 0.0 25.335375 7 CGCAGAG 29405 0.0 24.952398 8 GTACATG 26715 0.0 21.590944 1 TATACAC 9200 0.0 21.008537 3 GCAGAGT 34945 0.0 20.98832 9 TACATGG 27165 0.0 20.72279 2 GAGTACT 19395 0.0 20.05796 12-13 ACATGGG 27385 0.0 19.860022 3 GTGGTAT 5880 0.0 19.456978 1 TTATACA 8805 0.0 19.194818 2 CAGAGTA 33870 0.0 18.678896 10-11 TGGTATC 5585 0.0 18.62245 2 >>END_MODULE