##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139098_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8790885 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.557854186467004 33.0 33.0 33.0 33.0 33.0 2 32.56727917610115 33.0 33.0 33.0 33.0 33.0 3 32.56193022659266 33.0 33.0 33.0 33.0 33.0 4 36.4577580072996 37.0 37.0 37.0 37.0 37.0 5 36.48752019847831 37.0 37.0 37.0 37.0 37.0 6 36.48462344803737 37.0 37.0 37.0 37.0 37.0 7 36.46118564854392 37.0 37.0 37.0 37.0 37.0 8 36.44475795099128 37.0 37.0 37.0 37.0 37.0 9 36.481900627752495 37.0 37.0 37.0 37.0 37.0 10-11 36.4367106952258 37.0 37.0 37.0 37.0 37.0 12-13 36.36740453321821 37.0 37.0 37.0 37.0 37.0 14-15 38.394693708312644 40.0 37.0 40.0 37.0 40.0 16-17 38.35358265976634 40.0 37.0 40.0 37.0 40.0 18-19 38.35783206127711 40.0 37.0 40.0 37.0 40.0 20-21 38.35157034592788 40.0 37.0 40.0 37.0 40.0 22-23 38.34643799470719 40.0 37.0 40.0 37.0 40.0 24-25 38.345624932828485 40.0 37.0 40.0 37.0 40.0 26-27 38.19601119603966 40.0 37.0 40.0 37.0 40.0 28-29 38.12013244172657 40.0 37.0 40.0 33.0 40.0 30-31 38.08868259792558 40.0 37.0 40.0 33.0 40.0 32-33 38.0131122254859 40.0 37.0 40.0 33.0 40.0 34-35 37.97559661056776 40.0 37.0 40.0 33.0 40.0 36-37 37.93753366934811 40.0 37.0 40.0 33.0 40.0 38-39 37.89199051464996 40.0 37.0 40.0 33.0 40.0 40-41 37.85854048353855 40.0 37.0 40.0 33.0 40.0 42-43 37.76050269345357 40.0 37.0 40.0 33.0 40.0 44-45 37.71248723378454 40.0 37.0 40.0 33.0 40.0 46-47 37.67505110698097 40.0 37.0 40.0 33.0 40.0 48-49 37.645170371328504 40.0 37.0 40.0 33.0 40.0 50-51 37.580513551675736 40.0 37.0 40.0 33.0 40.0 52-53 37.47503163183448 40.0 37.0 40.0 33.0 40.0 54-55 37.26208560662553 40.0 37.0 40.0 33.0 40.0 56-57 37.07338669272071 38.5 37.0 40.0 33.0 40.0 58-59 37.009596407094264 37.0 37.0 40.0 33.0 40.0 60-61 36.87138297440336 37.0 37.0 40.0 33.0 40.0 62-63 36.68215871993921 37.0 37.0 40.0 33.0 40.0 64-65 36.52985204294012 37.0 37.0 40.0 33.0 40.0 66-67 36.30664534211812 37.0 37.0 40.0 33.0 40.0 68-69 36.08195120773641 37.0 37.0 40.0 33.0 40.0 70-71 35.81858156095231 37.0 35.0 37.0 33.0 40.0 72-73 35.60845737749085 37.0 33.0 37.0 33.0 40.0 74-75 35.430834529216995 37.0 33.0 37.0 33.0 40.0 76-77 33.64336838059549 35.0 33.0 37.0 27.0 37.0 78-79 34.88956966087851 37.0 33.0 37.0 33.0 37.0 80-81 34.96398158454723 37.0 33.0 37.0 33.0 37.0 82-83 34.85552435907917 37.0 33.0 37.0 33.0 37.0 84-85 34.70505386115928 37.0 33.0 37.0 33.0 37.0 86-87 34.58470890794153 37.0 33.0 37.0 33.0 37.0 88-89 34.509983048868605 37.0 33.0 37.0 33.0 37.0 90-91 34.42647710397418 37.0 33.0 37.0 30.0 37.0 92-93 34.35972950297789 37.0 33.0 37.0 30.0 37.0 94-95 34.35399644708209 37.0 33.0 37.0 30.0 37.0 96-97 34.36233957586235 37.0 33.0 37.0 33.0 37.0 98-99 34.367049902686354 37.0 33.0 37.0 33.0 37.0 100 34.37456507740409 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 10.0 20 100.0 21 391.0 22 1607.0 23 4403.0 24 9910.0 25 19687.0 26 34078.0 27 53916.0 28 78740.0 29 109115.0 30 146347.0 31 192013.0 32 252894.0 33 333868.0 34 454690.0 35 653582.0 36 1116007.0 37 2522333.0 38 2752654.0 39 54539.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.75139363101667 19.978841720714126 14.279745440874269 23.990019207394933 2 14.73326064440611 20.664654355050715 41.855842728007474 22.7462422725357 3 18.576047804060682 25.7175699602486 29.869245246638993 25.83713698905173 4 12.688096818465947 17.787208000104656 38.439588278085765 31.085106903343636 5 13.747717095605278 37.52817833471829 35.17714086806959 13.546963701606835 6 30.56310377886911 37.39195057061383 18.569770685177964 13.475174965339095 7 27.0846905630093 32.23769847973213 22.738233977580187 17.939376979678382 8 24.459346243296324 37.115660141157576 20.699292505817105 17.725701109729 9 25.665459165942906 16.928898512493337 20.885985881967514 36.51965643959624 10-11 24.70054150715938 26.634593152967454 28.405302509998442 20.25956282987472 12-13 25.44362833174134 24.00792709610583 28.608301280159022 21.94014329199381 14-15 22.430232785664817 25.425483650488406 26.218272737283836 25.92601082656294 16-17 22.14802036427504 28.515177937147396 26.904048909751406 22.432752788826154 18-19 22.176055084328823 27.718460655554022 28.552807823103134 21.55267643701402 20-21 22.961146303464368 26.902609606006106 28.423690540063763 21.71255355046577 22-23 22.690943444029497 26.832113546412415 28.27305919465337 22.203883814904714 24-25 22.460276700069507 26.940345682501825 28.358642196245714 22.240735421182958 26-27 22.3801800410296 27.079399224310986 28.30092531439342 22.239495420265996 28-29 22.304835274684713 27.17639340708178 28.30538194605557 22.213389372177932 30-31 22.58908583213677 27.006021947394693 28.1951701008839 22.209722119584637 32-33 22.380985585817125 27.161807881956673 28.159520593923403 22.2976859383028 34-35 22.503124431856513 27.212332158264907 28.115661722079356 22.16888168779922 36-37 22.49019264413194 27.166053262004674 28.07502924648834 22.26872484737504 38-39 22.344965565428506 27.288935236963578 28.129296622235028 22.236802575372884 40-41 22.604784860998773 27.1048550119407 28.013254768904982 22.277105358155545 42-43 22.485449804258565 27.233775808851973 27.83928830384255 22.44148608304691 44-45 22.570813667539987 27.310836338205156 27.69342501006497 22.424924984189886 46-47 22.694290876832543 27.33539608077985 27.42279344761178 22.547519594775824 48-49 22.542428387275468 27.499283849041067 27.37604422872439 22.582243534959076 50-51 22.582062355921153 27.581105980421473 27.31039236922691 22.52643929443047 52-53 22.750999677303884 27.44909770124145 27.214892644621504 22.585009976833163 54-55 22.695520434668616 27.37016540070832 27.265350272596518 22.66896389202655 56-57 22.68605439533819 27.50399098637918 27.218141913694726 22.59181270458791 58-59 22.686064856759515 27.51540432119997 27.225144408167466 22.57338641387305 60-61 22.711009642606488 27.473357248920426 27.286822057786353 22.528811050686738 62-63 22.688725882389953 27.580076618122572 27.186775694491182 22.54442180499629 64-65 22.668003182464755 27.52012391563558 27.168937163982132 22.642935737917536 66-67 22.729912435119562 27.51462138046567 27.082675706677623 22.67279047773715 68-69 22.67086416561309 27.48006923666264 27.15777194149565 22.69129465622862 70-71 22.650950836243677 27.32826266410503 27.233465552920254 22.787320946731036 72-73 22.720007976825734 27.371353685374768 27.108938902340395 22.799699435459104 74-75 22.55414631894767 27.560598989916375 27.110049837608262 22.77520485352769 76-77 22.748840159367433 27.424494592389586 27.074921996439134 22.751743251803845 78-79 22.683444581676042 27.441379304928663 27.02575561874375 22.849420494651547 80-81 22.648842254613246 27.529253384147097 27.050171991388055 22.7717323698516 82-83 22.709784744395574 27.455094820142666 27.105028998103975 22.73009143735778 84-85 22.764902356976485 27.465800056208145 27.076021346744174 22.693276240071196 86-87 22.649966427801626 27.46845039453766 27.155547754996352 22.726035422664363 88-89 22.66449486370788 27.43597358341609 27.122399363718063 22.777132189157967 90-91 22.686682959265625 27.50888695066451 27.09948099724523 22.704949092824638 92-93 22.727134895512155 27.470921722395985 27.09322585860517 22.70871752348669 94-95 22.61660426969361 27.509529365730227 27.151351163937637 22.722515200638522 96-97 22.70448514372672 27.606985374133124 27.199775406038107 22.488754076102047 98-99 23.81348026650593 29.562804873374642 27.35983979232199 19.26387506779744 100 22.73414016147055 30.53261542416183 21.19855027987179 25.53469413449584 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1303.0 1 1203.5 2 1720.5 3 2491.5 4 3408.5 5 5731.5 6 7760.5 7 8996.0 8 9596.0 9 9396.0 10 8767.0 11 7997.0 12 8554.0 13 11192.0 14 17835.0 15 27473.0 16 35657.5 17 40632.0 18 41997.0 19 39953.0 20 35811.0 21 31066.0 22 27840.0 23 28111.0 24 32432.0 25 40421.0 26 51196.0 27 64312.5 28 80013.5 29 98563.5 30 117863.0 31 138057.5 32 159782.0 33 180569.0 34 201902.5 35 221540.5 36 241808.0 37 263673.5 38 282075.0 39 296002.5 40 310670.0 41 325534.5 42 335461.0 43 344074.5 44 352144.0 45 361072.0 46 367412.5 47 369520.5 48 369977.0 49 367045.5 50 361692.5 51 353946.5 52 341106.0 53 323798.0 54 306625.0 55 287842.0 56 265512.5 57 240592.5 58 214322.5 59 185832.0 60 154547.0 61 125932.0 62 100441.5 63 77077.0 64 56998.5 65 41600.5 66 31052.5 67 23614.0 68 17627.0 69 12427.5 70 8457.0 71 5786.0 72 3828.0 73 2474.0 74 1655.0 75 1091.5 76 739.5 77 500.5 78 358.0 79 265.5 80 178.0 81 113.0 82 76.5 83 55.0 84 43.5 85 33.0 86 25.5 87 19.0 88 13.0 89 11.0 90 10.5 91 8.5 92 7.5 93 4.5 94 2.0 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.1375418970899971E-5 7 0.0 8 0.0 9 0.0 10-11 0.001620997203353246 12-13 2.7301005530159936E-4 14-15 0.007428148587997681 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 135.0 20-21 538.0 22-23 1099.0 24-25 2740.0 26-27 3085.0 28-29 4953.0 30-31 12469.0 32-33 15551.0 34-35 21676.0 36-37 32760.0 38-39 40181.0 40-41 41623.0 42-43 49053.0 44-45 59179.0 46-47 58311.0 48-49 52532.0 50-51 46468.0 52-53 45109.0 54-55 48175.0 56-57 50998.0 58-59 51308.0 60-61 50821.0 62-63 49109.0 64-65 52490.0 66-67 56687.0 68-69 58580.0 70-71 58541.0 72-73 56543.0 74-75 57733.0 76-77 57044.0 78-79 62528.0 80-81 64665.0 82-83 63152.0 84-85 64169.0 86-87 68964.0 88-89 74667.0 90-91 79804.0 92-93 86515.0 94-95 108052.0 96-97 313913.0 98-99 569029.0 100-101 6099936.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.69761258073524 #Duplication Level Percentage of deduplicated Percentage of total 1 88.35401723487021 73.06666287240901 2 7.928291509462307 13.113015593532928 3 2.00336306865515 4.970200287305894 4 0.7824123786426842 2.588145430694569 5 0.34828179777773544 1.4401036590772571 6 0.18800472012084718 0.9328524904742027 7 0.1075107765008863 0.6223619180327016 8 0.07075788233523145 0.4681206352313776 9 0.049533306850030386 0.3686657597753843 >10 0.16331617753444647 2.1052589849214773 >50 0.0036545000059040895 0.20806041747011292 >100 8.317296452829221E-4 0.09662569791946181 >500 2.4917599291714675E-5 0.019926253155701717 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.1375418970899971E-5 0.0 0.0 0.0 3 0.0 1.1375418970899971E-5 0.0 0.0 0.0 4 0.0 5.687709485449986E-5 0.0 0.0 1.1375418970899971E-5 5 0.0 5.687709485449986E-5 0.0 0.0 1.1375418970899971E-5 6 6.825251382539983E-5 5.687709485449986E-5 0.0 0.0 2.2750837941799942E-5 7 6.825251382539983E-5 5.687709485449986E-5 0.0 1.1375418970899971E-5 2.2750837941799942E-5 8 6.825251382539983E-5 9.100335176719977E-5 0.0 1.1375418970899971E-5 3.4126256912699914E-5 9 6.825251382539983E-5 1.592558655925996E-4 0.0 1.1375418970899971E-5 5.687709485449986E-5 10-11 6.825251382539983E-5 1.592558655925996E-4 0.0 1.1375418970899971E-5 5.687709485449986E-5 12-13 6.825251382539983E-5 1.592558655925996E-4 0.0 1.1375418970899971E-5 5.687709485449986E-5 14-15 7.39402233108498E-5 2.047575414761995E-4 0.0 1.1375418970899971E-5 7.39402233108498E-5 16-17 1.3650502765079965E-4 2.047575414761995E-4 0.0 1.1375418970899971E-5 9.100335176719977E-5 18-19 1.4788044662169964E-4 2.3319608890344943E-4 0.0 1.1375418970899971E-5 1.0806648022354973E-4 20-21 1.4788044662169964E-4 2.502592173597994E-4 0.0 2.2750837941799942E-5 1.251296086798997E-4 22-23 1.4788044662169964E-4 3.0144860272884926E-4 0.0 2.2750837941799942E-5 1.5356815610714962E-4 24-25 1.5925586559259962E-4 3.583256975833491E-4 0.0 2.2750837941799942E-5 1.7631899404894956E-4 26-27 1.7063128456349958E-4 3.98139663981499E-4 0.0 7.39402233108498E-5 1.8200670353439954E-4 28-29 1.7063128456349958E-4 3.98139663981499E-4 0.0 1.5356815610714962E-4 1.9338212250529952E-4 30-31 1.7063128456349958E-4 4.6639217780689886E-4 0.0 5.118938536904987E-4 2.047575414761995E-4 32-33 1.7631899404894956E-4 4.777675967777988E-4 0.0 0.0013764256954788966 2.047575414761995E-4 34-35 2.047575414761995E-4 5.915217864867986E-4 0.0 0.0024627782071998438 2.047575414761995E-4 36-37 2.047575414761995E-4 6.768374287685483E-4 0.0 0.00429990837100019 2.1613296044709947E-4 38-39 2.047575414761995E-4 6.995882667103483E-4 0.0 0.007189264789608782 2.2750837941799945E-4 40-41 2.047575414761995E-4 7.507776520793982E-4 0.0 0.010357318973004424 2.2750837941799945E-4 42-43 2.047575414761995E-4 8.01967037448448E-4 0.0 0.013576562541769116 2.2750837941799945E-4 44-45 2.047575414761995E-4 9.157212271574478E-4 0.0 0.01694368655715551 2.2750837941799945E-4 46-47 2.047575414761995E-4 9.839737409828475E-4 0.0 0.0202880597346001 2.2750837941799945E-4 48-49 2.104452509616495E-4 9.953491599537477E-4 0.0 0.02403626028551164 2.388837983888994E-4 50-51 2.2750837941799942E-4 0.0010408508358373475 0.0 0.02788115189767583 2.502592173597994E-4 52-53 2.388837983888994E-4 0.0010579139642936974 0.0 0.03144734574505297 2.786977647870493E-4 54-55 2.388837983888994E-4 0.0010579139642936974 0.0 0.03497941333551741 3.128240216997492E-4 56-57 2.6163463633069935E-4 0.0010579139642936974 0.0 0.038670736791574456 3.185117311851992E-4 58-59 2.6163463633069935E-4 0.0010692893832645973 0.0 0.0427715753305839 3.185117311851992E-4 60-61 2.900731837579493E-4 0.0010806648022354973 0.0 0.047060108282613186 3.355748596415492E-4 62-63 3.4126256912699916E-4 0.0011034156401772972 0.0 0.05109838201728267 3.526379880978991E-4 64-65 3.4126256912699916E-4 0.001194418991944497 0.0 0.05525609765114661 3.526379880978991E-4 66-67 3.4695027861244914E-4 0.001194418991944497 0.0 0.058924670269261854 3.583256975833491E-4 68-69 3.526379880978991E-4 0.0012456083773135468 0.0 0.06308807361261125 3.6970111655424906E-4 70-71 3.640134070687991E-4 0.0012854223437116967 0.0 0.06664289204101748 3.753888260396991E-4 72-73 3.98139663981499E-4 0.0013309240195952968 0.0 0.06962325181139328 4.09515082952399E-4 74-75 3.98139663981499E-4 0.0013821134049643467 0.0 0.07193246186248597 4.09515082952399E-4 76-77 3.98139663981499E-4 0.0014389904998188463 0.0 0.07427579817049138 4.09515082952399E-4 78-79 4.09515082952399E-4 0.0014560536282751963 0.0 0.07579441660310651 4.09515082952399E-4 80-81 4.09515082952399E-4 0.0014560536282751963 0.0 0.0764086892275351 4.379536303796489E-4 82-83 4.15202792437849E-4 0.0014560536282751963 0.0 0.07677270263460391 5.062061442050488E-4 84-85 4.20890501923299E-4 0.0014560536282751963 0.0 0.0769092076622547 5.460201106031986E-4 86-87 4.2657821140874895E-4 0.0014788044662169964 0.0 0.0769774601760801 5.460201106031986E-4 88 4.436413398650989E-4 0.0015243061421005963 0.0 0.0769774601760801 5.460201106031986E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11435 0.0 49.873177 1 GTATCAA 19625 0.0 35.80352 1 TCAACGC 23195 0.0 29.617235 4 ATCAACG 23415 0.0 29.320368 3 CAACGCA 23985 0.0 28.605913 5 TATCAAC 24755 0.0 28.01462 2 AACGCAG 24550 0.0 27.965302 6 ACGCAGA 28110 0.0 24.361954 7 CGCAGAG 28485 0.0 24.010801 8 GTGGTAT 5630 0.0 22.579084 1 GTACATG 27625 0.0 22.204477 1 TACATGG 27325 0.0 21.651659 2 ACATGGG 27830 0.0 20.711266 3 TGGTATC 5530 0.0 20.232048 2 GCAGAGT 34430 0.0 19.956 9 GAGTACT 18845 0.0 19.870024 12-13 CATGGGG 21105 0.0 18.812277 4 CAGAGTA 33155 0.0 18.806046 10-11 AGAGTAC 30565 0.0 17.928022 10-11 GTACTTT 20835 0.0 17.899153 14-15 >>END_MODULE