##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139097_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9519825 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.55932572289932 33.0 33.0 33.0 33.0 33.0 2 32.56368420637985 33.0 33.0 33.0 33.0 33.0 3 32.5569424858125 33.0 33.0 33.0 33.0 33.0 4 36.45295097336348 37.0 37.0 37.0 37.0 37.0 5 36.483171486870816 37.0 37.0 37.0 37.0 37.0 6 36.485192532425756 37.0 37.0 37.0 37.0 37.0 7 36.463206308939505 37.0 37.0 37.0 37.0 37.0 8 36.44521826819295 37.0 37.0 37.0 37.0 37.0 9 36.48098688788922 37.0 37.0 37.0 37.0 37.0 10-11 36.43477364342307 37.0 37.0 37.0 37.0 37.0 12-13 36.366425328196684 37.0 37.0 37.0 37.0 37.0 14-15 38.38668841076385 40.0 37.0 40.0 37.0 40.0 16-17 38.34922453931664 40.0 37.0 40.0 37.0 40.0 18-19 38.35392551858884 40.0 37.0 40.0 37.0 40.0 20-21 38.34886219069092 40.0 37.0 40.0 37.0 40.0 22-23 38.346473917342166 40.0 37.0 40.0 37.0 40.0 24-25 38.34562153411645 40.0 37.0 40.0 37.0 40.0 26-27 38.19626096837402 40.0 37.0 40.0 37.0 40.0 28-29 38.120185608394436 40.0 37.0 40.0 33.0 40.0 30-31 38.08450015760192 40.0 37.0 40.0 33.0 40.0 32-33 38.00878032941546 40.0 37.0 40.0 33.0 40.0 34-35 37.970386143035824 40.0 37.0 40.0 33.0 40.0 36-37 37.93045603996214 40.0 37.0 40.0 33.0 40.0 38-39 37.88486231406594 40.0 37.0 40.0 33.0 40.0 40-41 37.8531032696296 40.0 37.0 40.0 33.0 40.0 42-43 37.75797292924531 40.0 37.0 40.0 33.0 40.0 44-45 37.7095538006525 40.0 37.0 40.0 33.0 40.0 46-47 37.675011177103656 40.0 37.0 40.0 33.0 40.0 48-49 37.64884524864439 40.0 37.0 40.0 33.0 40.0 50-51 37.58216200110783 40.0 37.0 40.0 33.0 40.0 52-53 37.48021080308901 40.0 37.0 40.0 33.0 40.0 54-55 37.27034812011857 40.0 37.0 40.0 33.0 40.0 56-57 37.08332122471862 38.5 37.0 40.0 33.0 40.0 58-59 37.01960238796932 37.0 37.0 40.0 33.0 40.0 60-61 36.88049904136017 37.0 37.0 40.0 33.0 40.0 62-63 36.6969909002006 37.0 37.0 40.0 33.0 40.0 64-65 36.545714253806324 37.0 37.0 40.0 33.0 40.0 66-67 36.32547682179183 37.0 37.0 40.0 33.0 40.0 68-69 36.105540716072525 37.0 37.0 40.0 33.0 40.0 70-71 35.84563765767642 37.0 35.0 37.0 33.0 40.0 72-73 35.64174817642103 37.0 33.0 37.0 33.0 40.0 74-75 35.46566090788458 37.0 33.0 37.0 33.0 40.0 76-77 33.66628473682577 35.0 33.0 37.0 27.0 37.0 78-79 34.91739942897077 37.0 33.0 37.0 33.0 37.0 80-81 34.994451944201145 37.0 33.0 37.0 33.0 37.0 82-83 34.88983121315786 37.0 33.0 37.0 33.0 37.0 84-85 34.74421609053056 37.0 33.0 37.0 33.0 37.0 86-87 34.626241988069694 37.0 33.0 37.0 33.0 37.0 88-89 34.55361835225855 37.0 33.0 37.0 33.0 37.0 90-91 34.47787348990396 37.0 33.0 37.0 33.0 37.0 92-93 34.41112781107827 37.0 33.0 37.0 30.0 37.0 94-95 34.40210165045019 37.0 33.0 37.0 33.0 37.0 96-97 34.41126517228152 37.0 33.0 37.0 33.0 37.0 98-99 34.416322535194084 37.0 33.0 37.0 33.0 37.0 100 34.426015921318225 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 18.0 20 88.0 21 458.0 22 1695.0 23 4772.0 24 10663.0 25 21338.0 26 36312.0 27 57007.0 28 83284.0 29 115711.0 30 155950.0 31 205511.0 32 270327.0 33 359271.0 34 488627.0 35 700423.0 36 1193842.0 37 2724109.0 38 3020554.0 39 69862.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.50670836911392 20.17719863547912 14.314643388927841 24.00144960647911 2 14.694555834797383 20.87131853789329 41.74260556260225 22.69152006470707 3 18.329948292116715 26.083431155509686 30.143936469420396 25.442684082953203 4 12.64534799746844 17.981832649234626 38.46703064394566 30.905788709351274 5 13.658917049420552 37.63311825585029 35.21911379673471 13.488850897994448 6 30.260106781419527 37.49593611056342 18.72434366150372 13.51961344651333 7 26.727371564078123 32.44212997612876 22.975758482955307 17.85473997683781 8 24.452319239061644 36.869721869887314 20.964944208533247 17.713014682517798 9 25.74899223462616 16.85294635142978 21.01491361448346 36.383147799460595 10-11 24.553981669124035 26.61919376247679 28.560845978371535 20.265978590027643 12-13 25.393158103857722 24.099706900432018 28.684796769680883 21.822338226029377 14-15 22.42981656089015 25.422901220133028 26.320115943417495 25.827166275559332 16-17 22.08539022513544 28.518013723991775 26.966041917787354 22.43055413308543 18-19 22.15383160929954 27.660319386123167 28.64025861819939 21.5455903863779 20-21 22.908538228964737 26.866903120122544 28.501279785771654 21.72327886514106 22-23 22.67597783586228 26.834020204350495 28.341380752305113 22.148621207482112 24-25 22.438493816086176 26.98984136033863 28.376696549983887 22.194968273591304 26-27 22.371805032401124 27.115007271490416 28.341217263052208 22.171970433056252 28-29 22.31352745995736 27.142729904861735 28.360434325320007 22.1833083098609 30-31 22.560564048041325 27.07097511557402 28.197008480558488 22.171452355826165 32-33 22.421219589658495 27.13621722689709 28.197446531125784 22.24511665231863 34-35 22.524483495887676 27.165906619749165 28.176126111947546 22.13348377241561 36-37 22.49567309923047 27.17483306288217 28.085208959274695 22.244284878612664 38-39 22.354758360100654 27.22111323334881 28.147515200062124 22.27661320648841 40-41 22.627289392902906 27.058860188579096 28.01925460198232 22.294595816535683 42-43 22.519964724021246 27.18150550788161 27.832878357899 22.465651410198145 44-45 22.55878556756277 27.28225819932263 27.67632316248223 22.482633070632374 46-47 22.666171274122586 27.28809431297209 27.413605023001303 22.632129389904023 48-49 22.584043263741236 27.444102813383136 27.337509602367398 22.63434432050823 50-51 22.609812200803464 27.548013375635378 27.279874904829526 22.56229951873163 52-53 22.810830760975414 27.41801598081239 27.169839360393755 22.60131389781844 54-55 22.694957183016893 27.34246125745997 27.215365610709753 22.747215948813388 56-57 22.693199444259125 27.45817079468206 27.188686177109524 22.659943583949293 58-59 22.694960945145194 27.504627277140298 27.181109538412073 22.61930223930243 60-61 22.739275401344887 27.51078762978423 27.164177892516957 22.585759076353927 62-63 22.72945346777909 27.587652073263623 27.13324262695772 22.549651831999565 64-65 22.722842864909964 27.52651628237171 27.0599276803337 22.690713172384623 66-67 22.739213118410444 27.48564638499067 27.004361682838308 22.770778813760582 68-69 22.717541332543377 27.476751274187734 27.061351615623426 22.744355777645463 70-71 22.710803177352584 27.341654687606955 27.112162689023613 22.83537944601685 72-73 22.77610473022201 27.336963318521562 27.028868270634927 22.858063680621502 74-75 22.608915068112907 27.49465641625467 27.041216291581343 22.855212224051087 76-77 22.796140759800284 27.394252854743428 27.000202099241726 22.80940428621456 78-79 22.730019352145483 27.42703765194215 26.944753752287237 22.898189243625133 80-81 22.736895990388916 27.47903708368194 26.971355900566437 22.812711025362702 82-83 22.77574735546692 27.41886439363766 27.02724476440655 22.778143486488872 84-85 22.823430972336794 27.425893484099813 26.99140358190228 22.759271961661113 86-87 22.7144142119148 27.420020495436027 27.05416168647426 22.81140360617492 88-89 22.741042000161602 27.387523035691164 27.02224244239495 22.84919252175228 90-91 22.752599724960085 27.45710260854371 26.98689405576801 22.8034036107282 92-93 22.7931237120234 27.389465226395117 27.059238872534262 22.75817218904722 94-95 22.69370472629356 27.425464130983713 27.07725623895529 22.803574903767437 96-97 22.80383973938398 27.508635446855667 27.094639483996367 22.592885329763984 98-99 23.90271087457955 29.43269454103564 27.289772478633058 19.37482210575175 100 22.797208367496477 30.42181034630098 21.03549564271946 25.745485643483086 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1474.0 1 1394.0 2 2121.0 3 3072.0 4 4179.5 5 7123.5 6 9655.5 7 11025.5 8 11629.0 9 11159.5 10 10147.0 11 9153.0 12 9818.0 13 12834.5 14 20459.0 15 31921.5 16 41777.0 17 47770.5 18 49473.5 19 47126.5 20 42497.0 21 37136.5 22 33267.0 23 33035.5 24 37344.5 25 45955.0 26 57990.5 27 72590.0 28 89840.5 29 110649.5 30 132723.5 31 155742.5 32 179717.5 33 202639.0 34 224995.5 35 246081.5 36 268866.0 37 291401.0 38 310591.0 39 325604.0 40 338650.5 41 351995.0 42 361508.5 43 370004.0 44 377497.5 45 385188.5 46 392036.5 47 395178.5 48 396963.5 49 393631.0 50 387387.5 51 380709.5 52 369828.0 53 353278.0 54 334818.5 55 314023.0 56 290263.0 57 263946.0 58 235933.0 59 205393.0 60 170952.5 61 140017.5 62 112777.5 63 86957.0 64 64435.0 65 47486.5 66 35922.0 67 27397.0 68 20373.5 69 14470.5 70 10121.5 71 7065.0 72 4626.0 73 2946.5 74 1907.0 75 1217.0 76 788.0 77 519.0 78 371.5 79 263.5 80 188.0 81 132.5 82 89.0 83 54.5 84 34.0 85 26.0 86 24.0 87 21.0 88 15.5 89 9.5 90 5.5 91 3.5 92 2.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 4.201757910465791E-5 7 0.0 8 0.0 9 0.0 10-11 0.0015651548216485073 12-13 2.3634888246370074E-4 14-15 0.0073425719485389705 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 168.0 20-21 536.0 22-23 1154.0 24-25 3170.0 26-27 3794.0 28-29 5841.0 30-31 14265.0 32-33 18015.0 34-35 24817.0 36-37 36455.0 38-39 45153.0 40-41 48481.0 42-43 58384.0 44-45 69729.0 46-47 68618.0 48-49 62184.0 50-51 55702.0 52-53 55452.0 54-55 59952.0 56-57 63487.0 58-59 64424.0 60-61 65006.0 62-63 63649.0 64-65 67236.0 66-67 73079.0 68-69 72710.0 70-71 72703.0 72-73 70586.0 74-75 73273.0 76-77 72450.0 78-79 78454.0 80-81 80783.0 82-83 79188.0 84-85 80032.0 86-87 84428.0 88-89 90882.0 90-91 96011.0 92-93 101843.0 94-95 122854.0 96-97 339335.0 98-99 598055.0 100-101 6377487.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.88442169014449 #Duplication Level Percentage of deduplicated Percentage of total 1 88.58594226385028 73.4239459441576 2 7.734334342191087 12.821116582214644 3 1.9704890299224374 4.899685310756851 4 0.7611766281511576 2.523587385134514 5 0.35399491306048697 1.467033182513572 6 0.18685578138281408 0.9292460027624768 7 0.12064306431851118 0.6999601431876693 8 0.07094275199442454 0.47040391777321783 9 0.04975407864501791 0.3711454231696449 >10 0.16165035740796535 2.109787623554148 >50 0.0035141588662545684 0.19729206881586342 >100 7.026302095946174E-4 0.08679641595986201 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.1008789552328956E-5 0.0 0.0 0.0 3 0.0 2.1008789552328956E-5 0.0 0.0 0.0 4 0.0 5.252197388082239E-5 0.0 1.0504394776164478E-5 0.0 5 0.0 6.302636865698687E-5 0.0 1.0504394776164478E-5 0.0 6 0.0 6.302636865698687E-5 0.0 1.0504394776164478E-5 2.1008789552328956E-5 7 0.0 6.302636865698687E-5 0.0 1.0504394776164478E-5 2.1008789552328956E-5 8 0.0 7.353076343315134E-5 0.0 1.0504394776164478E-5 3.1513184328493436E-5 9 0.0 1.5756592164246718E-4 0.0 4.201757910465791E-5 3.1513184328493436E-5 10-11 0.0 1.5756592164246718E-4 0.0 5.252197388082239E-5 4.201757910465791E-5 12-13 0.0 1.5756592164246718E-4 0.0 5.777417126890463E-5 4.201757910465791E-5 14-15 0.0 1.9958350074712508E-4 0.0 6.302636865698687E-5 5.252197388082239E-5 16-17 0.0 2.1008789552328955E-4 0.0 6.302636865698687E-5 6.302636865698687E-5 18-19 0.0 2.3109668507561852E-4 0.0 7.353076343315134E-5 7.353076343315134E-5 20-21 0.0 2.62609869404112E-4 0.0 8.928735559739806E-5 7.878296082123359E-5 22-23 0.0 2.8361865895644087E-4 0.0 9.979175037356254E-5 9.453955298548031E-5 24-25 0.0 3.1513184328493436E-4 0.0 1.2605273731397374E-4 1.0504394776164478E-4 26-27 0.0 3.256362380610988E-4 0.0 2.3634888246370074E-4 1.0504394776164478E-4 28-29 0.0 3.256362380610988E-4 0.0 5.93498304853293E-4 1.0504394776164478E-4 30-31 0.0 3.466450276134278E-4 0.0 0.0023634888246370075 1.0504394776164478E-4 32-33 0.0 3.466450276134278E-4 0.0 0.006864621986223486 1.0504394776164478E-4 34-35 0.0 3.939148041061679E-4 0.0 0.012379429243709838 1.0504394776164478E-4 36-37 0.0 4.4118458059890804E-4 0.0 0.019890071508667437 1.1554834253780926E-4 38-39 0.0 4.6219337015123704E-4 0.0 0.030462744850876987 1.2605273731397374E-4 40-41 0.0 5.252197388082239E-4 0.0 0.04061524240203995 1.365571320901382E-4 42-43 0.0 5.462285283605528E-4 0.0 0.05018999824051387 1.4180932947822043E-4 44-45 0.0 5.987505022413753E-4 0.0 0.060111399106601224 1.4706152686630268E-4 46-47 0.0 6.407680813460331E-4 0.0 0.06886681215253432 1.6281811903054943E-4 48-49 0.0 6.407680813460331E-4 0.0 0.07652976814174631 1.7857471119479612E-4 50-51 0.0 7.405598317195958E-4 0.0 0.08311077146901336 1.7857471119479612E-4 52-53 0.0 7.45812029107678E-4 0.0 0.08955521766419025 1.9433130335904284E-4 54-55 0.0 7.563164238838425E-4 0.0 0.09505952052690045 2.1008789552328955E-4 56-57 0.0 7.668208186600068E-4 0.0 0.09970246301796515 2.1008789552328955E-4 58-59 0.0 7.720730160480891E-4 0.0 0.10445570165417957 2.153400929113718E-4 60-61 0.0 7.983340029885003E-4 0.0 0.10924570567211056 2.2059229029945402E-4 62-63 0.0 8.035862003765825E-4 0.0 0.11417751901951978 2.3109668507561852E-4 64-65 0.0 0.0010189262932879543 0.0 0.11858936482550887 2.3109668507561852E-4 66-67 0.0 0.0010189262932879543 0.0 0.12341088202776837 2.3109668507561852E-4 68-69 0.0 0.0010451872802283656 0.0 0.1284529915203273 2.3634888246370074E-4 70-71 0.0 0.0010504394776164477 0.0 0.13311694280094433 2.4685327723986524E-4 72-73 0.0 0.00105569167500453 0.0 0.1366149062614071 2.9412305373260536E-4 74-75 0.0 0.0010819526619449413 0.0 0.1397189549177637 3.0462744850876986E-4 76-77 0.0 0.0011502312279900104 0.0 0.14270745523158251 3.0462744850876986E-4 78-79 0.0 0.001186996609706586 0.0 0.1446034984886802 3.0462744850876986E-4 80-81 0.0 0.001186996609706586 0.0 0.1453177973334594 3.098796458968521E-4 82-83 0.0 0.0011975010044827507 0.0 0.14576948630883446 3.1513184328493436E-4 84-85 0.0 0.0012185097940350794 0.0 0.14596906980958158 3.1513184328493436E-4 86-87 0.0 0.0012395185835874084 0.0 0.14603734837562665 3.1513184328493436E-4 88 0.0 0.0012710317679159018 0.0 0.14604260057301474 3.1513184328493436E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11470 0.0 48.585644 1 GTATCAA 20810 0.0 38.146503 1 TCAACGC 25120 0.0 30.9141 4 ATCAACG 25500 0.0 30.453423 3 CAACGCA 26020 0.0 29.812267 5 TATCAAC 26640 0.0 29.360882 2 AACGCAG 26725 0.0 29.074284 6 ACGCAGA 30805 0.0 25.237524 7 CGCAGAG 31185 0.0 24.888863 8 GTACATG 29565 0.0 22.776754 1 TACATGG 29985 0.0 21.99705 2 ACATGGG 30420 0.0 21.04394 3 GCAGAGT 37440 0.0 20.641327 9 GAGTACT 20770 0.0 19.206434 12-13 CATGGGG 23580 0.0 18.727377 4 AGAGTAC 33420 0.0 18.563965 10-11 CAGAGTA 36380 0.0 18.133476 10-11 GTGGTAT 6160 0.0 18.009329 1 TGGTATC 5855 0.0 17.17806 2 GTACTTT 23410 0.0 16.921097 14-15 >>END_MODULE