##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139090_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15042281 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.55270666729334 34.0 31.0 34.0 31.0 34.0 2 32.69602974442506 34.0 31.0 34.0 31.0 34.0 3 32.683249102978465 34.0 31.0 34.0 31.0 34.0 4 36.2110743044888 37.0 35.0 37.0 35.0 37.0 5 36.16610452896074 37.0 35.0 37.0 35.0 37.0 6 36.20896850683749 37.0 37.0 37.0 35.0 37.0 7 36.16905248612228 37.0 37.0 37.0 35.0 37.0 8 36.14557566103173 37.0 37.0 37.0 35.0 37.0 9 37.87312323177582 39.0 38.0 39.0 35.0 39.0 10-11 37.80181682552001 39.0 38.0 39.0 35.0 39.0 12-13 37.772857088629046 39.0 38.0 39.0 35.0 39.0 14-15 39.11934695941393 40.0 38.5 41.0 36.0 41.0 16-17 39.085736199184154 40.0 38.0 41.0 36.0 41.0 18-19 39.04602227547804 40.0 38.5 41.0 36.0 41.0 20-21 39.02976400882278 40.0 39.0 41.0 35.5 41.0 22-23 38.910272793081866 40.0 38.0 41.0 35.0 41.0 24-25 38.77298362646272 40.0 38.0 41.0 35.0 41.0 26-27 38.7230902258639 40.0 38.0 41.0 34.5 41.0 28-29 38.6712916135554 40.0 38.0 41.0 35.0 41.0 30-31 38.604702459063404 40.0 38.0 41.0 34.5 41.0 32-33 38.492213848157846 40.0 38.0 41.0 34.0 41.0 34-35 38.30011717913916 40.0 38.0 41.0 34.0 41.0 36-37 38.433967952359424 40.0 38.0 41.0 34.0 41.0 38-39 38.41247005117221 40.0 38.0 41.0 34.0 41.0 40-41 38.38311581244106 40.0 38.0 41.0 34.0 41.0 42-43 38.41626968341632 40.0 38.0 41.0 34.0 41.0 44-45 38.35378860638096 40.0 38.0 41.0 34.0 41.0 46-47 38.293574420785546 40.0 38.0 41.0 33.5 41.0 48-49 38.13887548509637 40.0 38.0 41.0 33.0 41.0 50-51 38.13629463989133 40.0 37.5 41.0 33.0 41.0 52-53 38.04305428752642 40.0 37.0 41.0 33.0 41.0 54-55 37.8959128849184 40.0 37.0 41.0 33.0 41.0 56-57 37.72676602004496 40.0 36.5 41.0 33.0 41.0 58-59 37.56288559654888 39.0 36.0 41.0 33.0 41.0 60-61 37.3843444549244 39.0 36.0 41.0 32.0 41.0 62-63 37.17480980720688 39.0 35.0 40.5 32.0 41.0 64-65 36.883645837874965 38.0 35.0 40.0 31.5 41.0 66-67 36.52843815881846 38.0 35.0 40.0 31.0 41.0 68-69 36.19583877316293 37.0 35.0 40.0 31.0 41.0 70-71 35.892040589498535 37.0 34.5 39.0 31.0 41.0 72-73 35.56464236388047 36.0 34.0 39.0 30.0 40.5 74-75 35.19680473914377 36.0 34.0 39.0 30.0 40.0 76-77 34.229790662170245 35.0 33.0 37.0 29.0 39.0 78-79 34.517069711711585 35.0 34.0 37.0 29.5 39.0 80-81 34.3195393919577 35.0 34.0 37.0 29.5 39.0 82-83 34.04150527062854 35.0 33.5 36.0 29.0 38.5 84-85 33.79313961655835 35.0 33.0 36.0 29.0 37.0 86-87 33.55019235157747 35.0 33.0 35.5 29.0 37.0 88-89 33.309075906434806 35.0 33.0 35.0 29.0 36.5 90-91 33.119534532897475 35.0 33.0 35.0 29.0 36.0 92-93 33.026403674081095 34.5 33.0 35.0 29.0 36.0 94-95 32.94556908523466 34.0 32.0 35.0 29.0 35.5 96-97 32.92468951844302 34.0 32.0 35.0 29.0 35.0 98-99 33.05034049820351 34.0 32.0 35.0 29.0 35.0 100-101 31.17299553304975 32.5 28.5 34.5 24.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 5.0 19 11.0 20 86.0 21 417.0 22 2132.0 23 7145.0 24 18025.0 25 37475.0 26 65745.0 27 104784.0 28 148799.0 29 200116.0 30 258051.0 31 325959.0 32 412294.0 33 539325.0 34 747990.0 35 1084276.0 36 1801537.0 37 3307780.0 38 3956296.0 39 1913605.0 40 110426.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 38.33043516876665 21.690536387471607 15.585244762445905 24.393783681315842 2 13.56921650359048 21.828079609290032 41.60927766621899 22.993426220900492 3 16.8417897314629 26.78140061090477 31.5271642016479 24.84964545598443 4 11.940329465010754 18.94269912144215 38.92433087703215 30.192640536514947 5 12.735357454811203 38.15952356687441 36.003068418023624 13.102050560290765 6 29.428324695458404 38.588558383436556 18.747949114097064 13.235167807007981 7 25.78714131102466 33.174957519737696 23.38818982228758 17.649711346950063 8 24.0057275887879 37.32832806407485 21.22639511919768 17.439549227939565 9 25.145847228887693 16.952994030626073 21.651709604414386 36.249449136071846 10-11 23.694425868078415 27.214149282007895 29.184607646928622 19.90681720298507 12-13 24.523759379122158 24.76775649496689 29.3466754100767 21.361808715834254 14-15 21.671736445892915 26.172372803929893 27.03997965196605 25.115911098211143 16-17 21.1757350783246 29.38567518230888 27.742408075050996 21.696181664315525 18-19 21.237224593796647 28.435341687873 29.553519841837815 20.773913876492532 20-21 21.963184677933246 27.512161913755868 29.551763465029367 20.972889943281523 22-23 21.674794099314358 27.584465406191566 29.345186785788492 21.395553708705588 24-25 21.503273040044125 27.755712768951273 29.395878979270794 21.345135211733805 26-27 21.478440336329477 27.937972585735775 29.324484675121298 21.259102402813447 28-29 21.371393114701196 27.953391118652686 29.329417726577685 21.34579804006843 30-31 21.725311331157673 27.744667257289475 29.285357880888956 21.244663530663896 32-33 21.455161422389953 27.887613750644075 29.247891604666336 21.40933322229963 34-35 21.59740779746181 27.876611094746874 29.227697095209397 21.29828401258192 36-37 21.48489352707946 27.962671870048673 29.169019682789806 21.38341492008206 38-39 21.45736915171525 27.902003790889836 29.23396634040955 21.406660716985364 40-41 21.639041089213094 27.779560906335004 29.108363987199382 21.47303401725252 42-43 21.588542762270492 27.87217846150993 28.936174231724323 21.60310454449526 44-45 21.614867044901292 28.028145186890846 28.739036026794434 21.617951741413428 46-47 21.74002160780156 27.94424681515006 28.42729334777589 21.888438229272495 48-49 21.73250821791723 28.06328448860032 28.333394996746225 21.87081229673623 50-51 21.670099829659208 28.19330459170756 28.294238691571476 21.842356887061754 52-53 21.800057875116952 28.126662902337827 28.25255063497148 21.820728587573743 54-55 21.763257696518558 28.083114066813447 28.193299820267125 21.960328416400866 56-57 21.86244114653351 28.16169378798629 28.074802174151237 21.901062891328962 58-59 21.68426115897274 28.31028975277741 28.245107294281606 21.760341793968237 60-61 21.868986187108856 28.350105969196388 28.04626192295473 21.734645920740025 62-63 21.764580146537856 28.497334283437585 27.995719414682213 21.742366155342346 64-65 21.690678422104227 28.43022584166082 28.016215551902274 21.862880184332674 66-67 21.789873106312513 28.394721349376546 27.88191324352906 21.93349230078188 68-69 21.772712866079345 28.335987787409177 27.925312327527635 21.965987018983842 70-71 21.739687714534515 28.131980431814046 28.016162804333337 22.1121690493181 72-73 21.804672606487948 28.10317086707657 27.984366742315874 22.107789784119607 74-75 21.780041323122866 28.1602881583421 27.922580724151036 22.137089794383996 76-77 21.893127244209058 28.09881756096034 27.864593519467412 22.14346167536318 78-79 21.849492836423494 28.048577987066693 27.86727068347493 22.234658493034885 80-81 21.84300890064183 28.143010825931164 27.840042952745677 22.17393732068133 82-83 21.89754650986173 28.095734729098115 27.910757252602146 22.095961508438013 84-85 21.966773727642178 28.09508818672159 27.893024653834587 22.04511343180165 86-87 21.854983688139967 28.109352528745923 27.925526977233396 22.110136805880714 88-89 21.8564136137328 28.073535674779613 27.985705169067877 22.08434554241971 90-91 21.909311619972605 28.06289369905066 27.98795738930158 22.039837291675152 92-93 21.970724521683714 27.95722139702263 28.05966375249971 22.012390328793945 94-95 21.806218391540156 27.96292862204281 28.139209647788277 22.091643338628757 96-97 21.686306352429778 28.022610544069632 28.18710397409316 22.10397912940743 98-99 21.798080084462832 28.53062073040776 28.296068522431174 21.37523066269823 100-101 20.345516526888566 32.12370845310753 26.168935576459923 21.36183944354397 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3829.0 1 3363.5 2 4208.0 3 5886.5 4 7797.5 5 11567.5 6 14821.5 7 18354.0 8 21500.5 9 22182.5 10 20871.5 11 19429.0 12 21550.5 13 29100.5 14 46943.5 15 70879.0 16 89244.0 17 98338.5 18 99105.0 19 94051.0 20 86354.5 21 79706.5 22 77743.0 23 83745.0 24 97898.0 25 120808.5 26 150650.0 27 181983.0 28 216037.0 29 253003.5 30 287810.0 31 323100.5 32 360109.5 33 395119.5 34 427816.5 35 458488.0 36 490811.0 37 521074.0 38 544338.5 39 563235.5 40 580283.0 41 595032.5 42 603106.5 43 608100.5 44 613710.5 45 620540.5 46 629608.0 47 633363.0 48 623030.5 49 606362.0 50 589052.0 51 562723.5 52 528714.5 53 494128.0 54 461089.0 55 425767.0 56 388588.0 57 349423.0 58 306920.5 59 262592.0 60 218897.5 61 179311.0 62 143251.0 63 110410.5 64 82719.5 65 63286.0 66 49288.0 67 37274.5 68 27793.0 69 20337.5 70 14300.5 71 9961.5 72 7053.5 73 4847.5 74 3196.5 75 2079.0 76 1325.5 77 815.0 78 547.5 79 382.5 80 244.0 81 148.0 82 107.0 83 86.5 84 63.0 85 44.5 86 33.0 87 24.5 88 19.0 89 13.0 90 8.0 91 7.0 92 5.0 93 4.0 94 3.0 95 2.0 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.3295855861222112E-5 2 0.015808772618993088 3 1.3295855861222112E-5 4 1.063668468897769E-4 5 1.3295855861222112E-5 6 6.647927930611056E-6 7 6.647927930611056E-6 8 0.0 9 0.0 10-11 1.2963459464691558E-4 12-13 6.315531534080503E-4 14-15 2.758890091203588E-4 16-17 0.001964462703495567 18-19 0.0 20-21 0.0 22-23 1.9613508175458724E-4 24-25 0.009206899888180554 26-27 0.01948780565279409 28-29 0.3470281222656274 30-31 0.3231022452949204 32-33 0.31708217747325784 34-35 0.1855206217880258 36-37 0.04509023987099077 38-39 0.03638994296945388 40-41 0.014921059483836315 42-43 0.0139862838955341 44-45 0.017132726616262584 46-47 0.011954266631478498 48-49 0.007006500695716162 50-51 0.00397868282404409 52-53 0.001651183493863263 54-55 1.1237143529714379E-4 56-57 3.1806901834468545E-4 58-59 0.0013170608558482795 60-61 0.0012925404103260793 62-63 3.4985503023255316E-4 64-65 1.3304754214432953E-4 66-67 0.0031308381092076333 68-69 0.005371681847895924 70-71 0.0071504750537801556 72-73 0.011089491359076296 74-75 0.008106575084785796 76-77 0.006237599409958133 78-79 0.004077907915314099 80-81 0.004815079643421845 82-83 0.001556968240978744 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.002590600994287927 92-93 0.015106089752765952 94-95 0.001303207960835004 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 272.0 20-21 965.0 22-23 1990.0 24-25 5159.0 26-27 6396.0 28-29 11600.0 30-31 32461.0 32-33 42664.0 34-35 61731.0 36-37 84795.0 38-39 98048.0 40-41 106431.0 42-43 125108.0 44-45 147929.0 46-47 146378.0 48-49 128694.0 50-51 115869.0 52-53 103541.0 54-55 114468.0 56-57 122666.0 58-59 129221.0 60-61 132406.0 62-63 134545.0 64-65 148499.0 66-67 158011.0 68-69 147916.0 70-71 142903.0 72-73 140166.0 74-75 143737.0 76-77 143746.0 78-79 152357.0 80-81 155063.0 82-83 154636.0 84-85 160467.0 86-87 171270.0 88-89 185289.0 90-91 200140.0 92-93 217627.0 94-95 261835.0 96-97 397471.0 98-99 1433322.0 100-101 8674489.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.7359076801243 #Duplication Level Percentage of deduplicated Percentage of total 1 89.48523776176235 75.82612845714668 2 7.342186466794827 12.44293669241169 3 1.7759190062063852 4.514523268718471 4 0.6513167250222783 2.207596555280347 5 0.2893471044091112 1.2259044763360867 6 0.15231645980657157 0.7744004085799808 7 0.0920861438158625 0.5462102086699702 8 0.0540134809738379 0.36615050698250234 9 0.03409360818032498 0.2600057551725314 >10 0.1201031857664431 1.5802119402495092 >50 0.0027391204149724165 0.15654755410523835 >100 6.14843376248126E-4 0.08417231340934028 >500 2.609347081489129E-5 0.015211862937634723 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.329585586122211E-5 2 0.0 2.659171172244422E-5 0.0 6.647927930611055E-6 1.329585586122211E-5 3 0.0 2.659171172244422E-5 0.0 1.9943783791833166E-5 1.329585586122211E-5 4 0.0 7.31272072367216E-5 0.0 3.988756758366633E-5 1.329585586122211E-5 5 0.0 7.31272072367216E-5 0.0 5.318342344488844E-5 1.329585586122211E-5 6 6.647927930611055E-6 7.31272072367216E-5 0.0 5.318342344488844E-5 1.329585586122211E-5 7 6.647927930611055E-6 7.977513516733266E-5 0.0 5.98313513754995E-5 1.9943783791833166E-5 8 6.647927930611055E-6 1.1301477482038794E-4 0.0 6.647927930611056E-5 1.9943783791833166E-5 9 6.647927930611055E-6 1.794940541264985E-4 0.0 1.19662702750999E-4 3.323963965305528E-5 10-11 1.329585586122211E-5 1.794940541264985E-4 0.0 1.7617009016119298E-4 3.323963965305528E-5 12-13 1.9943783791833166E-5 1.794940541264985E-4 0.0 2.45973333432609E-4 3.65636036183608E-5 14-15 2.659171172244422E-5 2.3267747757138693E-4 0.0 2.692410811897478E-4 4.321153154897186E-5 16-17 3.988756758366634E-5 2.39325405501998E-4 0.0 3.091286487734141E-4 4.653549551427739E-5 18-19 4.653549551427739E-5 2.6591711722444224E-4 0.0 3.7560792807952466E-4 4.985945947958292E-5 20-21 5.318342344488844E-5 2.991567568774975E-4 0.0 4.587070272121628E-4 5.318342344488844E-5 22-23 5.650738741019397E-5 3.4236828842646935E-4 0.0 7.778075678814935E-4 6.980324327141608E-5 24-25 8.309909913263819E-5 3.6231207221830257E-4 0.0 0.001688573694375208 7.977513516733266E-5 26-27 9.307099102855478E-5 3.722839641142191E-4 0.0 0.004500647209023685 7.977513516733266E-5 28-29 9.971891895916584E-5 3.7560792807952466E-4 0.0 0.02211100829721237 8.642306309794372E-5 30-31 1.0969081085508242E-4 4.321153154897186E-4 0.0 0.031231965418010738 8.642306309794372E-5 32-33 1.19662702750999E-4 4.454111713509407E-4 0.0 0.03479193082485296 8.642306309794372E-5 34-35 1.3960648654283216E-4 5.218623425529679E-4 0.0 0.0394454803762807 8.642306309794372E-5 36-37 1.5290234240405428E-4 5.916655858243839E-4 0.0 0.047140456955962994 9.307099102855478E-5 38-39 1.5622630636935982E-4 6.016374777203005E-4 0.0 0.06186561732226649 9.307099102855478E-5 40-41 1.7284612619588744E-4 6.681167570264111E-4 0.0 0.08988330958582677 9.307099102855478E-5 42-43 1.7284612619588744E-4 6.913845047835498E-4 0.0 0.10321240508670194 9.63949549938603E-5 44-45 1.7284612619588744E-4 7.81131531846799E-4 0.0 0.12318278059025756 1.0636684688977688E-4 46-47 1.794940541264985E-4 8.542587390835206E-4 0.0 0.14830862420400204 1.2631063068161005E-4 48-49 1.794940541264985E-4 8.575827030488261E-4 0.0 0.16793995538309647 1.2631063068161005E-4 50-51 1.794940541264985E-4 9.971891895916582E-4 0.0 0.19309571467252873 1.2631063068161005E-4 52-53 1.8946594602241507E-4 0.0010038371175222693 0.0 0.22173166423363583 1.2631063068161005E-4 54-55 1.927899099877206E-4 0.0010171329733834914 0.0 0.3078688664305633 1.2631063068161005E-4 56-57 1.9943783791833168E-4 0.0010570205409671579 0.0 0.3809528621357359 1.3960648654283216E-4 58-59 1.9943783791833168E-4 0.0010570205409671579 0.0 0.4381350142308869 1.5290234240405428E-4 60-61 1.9943783791833168E-4 0.0010836122526896022 0.0 0.46309465964636615 1.5290234240405428E-4 62-63 1.9943783791833168E-4 0.0011068800004467407 0.0 0.47640713532741474 1.5290234240405428E-4 64-65 1.9943783791833168E-4 0.0012431625230242675 0.0 0.4864288866828109 1.5290234240405428E-4 66-67 1.9943783791833168E-4 0.0012631063068161005 0.0 0.4930269551539424 1.5290234240405428E-4 68-69 1.9943783791833168E-4 0.0012764021626773226 0.0 0.4993790502916413 1.5290234240405428E-4 70-71 1.9943783791833168E-4 0.0012896980185385448 0.0 0.5049101263299096 1.5955027033466533E-4 72-73 1.9943783791833168E-4 0.0012996699104344614 0.0 0.5095005205659966 2.2935351360608142E-4 74-75 1.9943783791833168E-4 0.0013428814419834331 0.0 0.5135291648919469 2.3600144153669247E-4 76-77 2.0608576584894272E-4 0.0013761210816364885 0.0 0.5171190459744769 2.4264936946730354E-4 78-79 2.1273369377955377E-4 0.0013960648654283217 0.0 0.5203532629127192 2.4929729739791456E-4 80-81 2.1273369377955377E-4 0.0014126846852548494 0.0 0.5217592996700434 2.6591711722444224E-4 82-83 2.1273369377955377E-4 0.0014359524330119881 0.0 0.5223011057963882 2.858609010162754E-4 84-85 2.1273369377955377E-4 0.0014658681086997377 0.0 0.522713277328086 2.858609010162754E-4 86-87 2.1273369377955377E-4 0.0014957837843874876 0.0 0.5228661796704901 2.858609010162754E-4 88-89 2.1273369377955377E-4 0.0015323473880058482 0.0 0.5229127151660045 2.858609010162754E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 18980 0.0 50.11594 1 GTATCAA 35725 0.0 38.27138 1 TCAACGC 44195 0.0 30.263418 4 ATCAACG 44275 0.0 30.141665 3 TATCAAC 46030 0.0 29.308773 2 CAACGCA 45660 0.0 29.27382 5 AACGCAG 46805 0.0 28.612112 6 ACGCAGA 54295 0.0 24.641735 7 CGCAGAG 55150 0.0 24.259708 8 GCAGAGT 63320 0.0 21.003033 9 GTGGTAT 9270 0.0 20.777283 1 GTACATG 43335 0.0 20.098032 1 TGGTATC 9075 0.0 19.920527 2 TACATGG 42930 0.0 19.677631 2 GAGTACT 38755 0.0 18.994373 12-13 ACATGGG 43820 0.0 18.908861 3 AGAGTAC 58210 0.0 18.737038 10-11 CAGAGTA 61975 0.0 18.154148 10-11 GTACTTT 43065 0.0 17.049517 14-15 AGTACTT 42550 0.0 16.903257 12-13 >>END_MODULE