##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139088_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 13072417 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.55348081383879 34.0 31.0 34.0 31.0 34.0 2 32.69612612571952 34.0 31.0 34.0 31.0 34.0 3 32.684006943780936 34.0 31.0 34.0 31.0 34.0 4 36.214553437210576 37.0 35.0 37.0 35.0 37.0 5 36.17089762359937 37.0 35.0 37.0 35.0 37.0 6 36.214306275572454 37.0 37.0 37.0 35.0 37.0 7 36.17371577115387 37.0 37.0 37.0 35.0 37.0 8 36.14976052248027 37.0 36.0 37.0 35.0 37.0 9 37.88090503844851 39.0 38.0 39.0 35.0 39.0 10-11 37.80826124197232 39.0 38.0 39.0 35.0 39.0 12-13 37.780714385105675 39.0 38.0 39.0 35.0 39.0 14-15 39.11968364381277 40.0 38.5 41.0 36.0 41.0 16-17 39.090304302563176 40.0 38.0 41.0 36.0 41.0 18-19 39.05135538439448 40.0 38.5 41.0 36.0 41.0 20-21 39.03759997047475 40.0 39.0 41.0 35.5 41.0 22-23 38.919965259093914 40.0 38.0 41.0 35.0 41.0 24-25 38.78458075407163 40.0 38.0 41.0 35.0 41.0 26-27 38.73282124712846 40.0 38.0 41.0 34.5 41.0 28-29 38.6761976299819 40.0 38.0 41.0 35.0 41.0 30-31 38.6071784058462 40.0 38.0 41.0 35.0 41.0 32-33 38.49234029381684 40.0 38.0 41.0 34.0 41.0 34-35 38.30078049079931 40.0 38.0 41.0 34.0 41.0 36-37 38.437456120684075 40.0 38.0 41.0 34.0 41.0 38-39 38.42024960175038 40.0 38.0 41.0 34.0 41.0 40-41 38.38604478188738 40.0 38.0 41.0 34.0 41.0 42-43 38.41617276967297 40.0 38.0 41.0 34.0 41.0 44-45 38.34948895915696 40.0 38.0 41.0 34.0 41.0 46-47 38.28940560332809 40.0 38.0 41.0 33.5 41.0 48-49 38.12971217326584 40.0 38.0 41.0 33.0 41.0 50-51 38.12555861477526 40.0 37.0 41.0 33.0 41.0 52-53 38.029394906812584 40.0 37.0 41.0 33.0 41.0 54-55 37.880124240624625 40.0 37.0 41.0 33.0 41.0 56-57 37.71425008641809 40.0 36.5 41.0 33.0 41.0 58-59 37.550089206220704 39.0 36.0 41.0 33.0 41.0 60-61 37.37184295838743 39.0 36.0 41.0 32.0 41.0 62-63 37.16039715744509 39.0 35.0 40.5 32.0 41.0 64-65 36.86713884143087 38.0 35.0 40.0 31.5 41.0 66-67 36.51359620112554 38.0 35.0 40.0 31.0 41.0 68-69 36.17938166073441 37.0 35.0 40.0 31.0 41.0 70-71 35.879893994865796 37.0 34.5 39.0 31.0 41.0 72-73 35.554190880643915 36.0 34.0 39.0 30.0 40.5 74-75 35.186402839519324 36.0 34.0 39.0 30.0 40.0 76-77 34.22486481999633 35.0 33.0 37.0 29.0 39.0 78-79 34.513548688925 35.0 34.0 37.0 29.5 39.0 80-81 34.3153756783342 35.0 34.0 37.0 29.5 39.0 82-83 34.035940070326234 35.0 33.5 36.0 29.0 38.5 84-85 33.79321183004285 35.0 33.0 36.0 29.0 37.0 86-87 33.55546807573822 35.0 33.0 35.5 29.0 37.0 88-89 33.31777453273152 35.0 33.0 35.0 29.0 36.5 90-91 33.12895476229582 35.0 33.0 35.0 29.0 36.0 92-93 33.042916128254504 34.5 33.0 35.0 29.0 36.0 94-95 32.960987387527496 34.0 32.5 35.0 29.0 35.5 96-97 32.938417810845124 34.0 32.0 35.0 29.0 35.0 98-99 33.064351791049006 34.0 32.0 35.0 29.0 35.0 100-101 31.207703031041426 32.5 28.5 34.5 24.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 10.0 20 65.0 21 334.0 22 1656.0 23 5480.0 24 14459.0 25 30456.0 26 54991.0 27 86740.0 28 127231.0 29 172529.0 30 225288.0 31 285665.0 32 364264.0 33 476762.0 34 663967.0 35 964623.0 36 1605279.0 37 2918469.0 38 3425827.0 39 1563771.0 40 84548.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.271966079417446 21.73070978381427 15.77517761252567 24.22214652424261 2 13.561230604254257 21.923183329161052 41.47366811951776 23.041917947066928 3 16.72798534502074 26.890375360577924 31.604889899090583 24.776749395310752 4 11.916281631529023 19.100991401731893 39.195633548545025 29.787093418194054 5 12.7775376198602 38.129475214874184 35.98887642583617 13.104110739429442 6 29.208691858590498 38.880858834292084 18.79317344298304 13.117275864134385 7 25.72503615819477 33.23571302843231 23.527554238822095 17.51169657455083 8 24.09430482519032 37.08331825705989 21.280907731141074 17.54146918660872 9 25.21524519910893 16.913796431065503 21.67722311795898 36.193735251866585 10-11 23.707307904719404 27.189832287484787 29.24523917739815 19.85762063039766 12-13 24.59820983076518 24.776215458602493 29.363699588738495 21.261875121893826 14-15 21.78202522348743 26.184681985402886 27.073296028469795 24.959996762639886 16-17 21.162350120637875 29.322855866427787 27.77687424744763 21.737919765486705 18-19 21.191482799240568 28.376232949117213 29.670285915756818 20.761998335885398 20-21 21.987470669283855 27.478026203547156 29.597001907964376 20.937501219204613 22-23 21.748165195765623 27.443267021461914 29.44500935007868 21.36355843269378 24-25 21.57635806136342 27.61122761659223 29.48190650703626 21.330507815008087 26-27 21.548412511104182 27.69340992036763 29.430579649309784 21.3275979192184 28-29 21.42268989667107 27.723814438214735 29.434579127002376 21.418916538111823 30-31 21.70689583499253 27.618811355565683 29.366434678524612 21.307858130917175 32-33 21.57194500838425 27.673441689150728 29.32756193939397 21.427051363071055 34-35 21.576215065454832 27.736748076735175 29.35995981746832 21.327077040341674 36-37 21.652996505134272 27.74312291940265 29.208911222765018 21.39496935269806 38-39 21.566844010737892 27.803718740627588 29.220705260688785 21.408731987945735 40-41 21.702407659596414 27.67409464048863 29.140962072299477 21.48253562761548 42-43 21.684232034158835 27.823096108086958 28.888920670950313 21.603751186803898 44-45 21.760014026314998 27.967167073416288 28.640792613962518 21.632026286306193 46-47 21.81688046382003 27.912092754054026 28.382198626593247 21.8888281555327 48-49 21.814261840908806 28.065232201356523 28.236574616379272 21.883931341355396 50-51 21.761467297942595 28.124330892642053 28.18971275066704 21.924489058748314 52-53 21.911394587764292 28.073371945628228 28.09916906531193 21.91606440129555 54-55 21.90229247633496 28.007843173978582 28.075756796634998 22.014107553051456 56-57 21.943149956298498 28.12400602465994 28.003480250127634 21.92936376891393 58-59 21.814940332370018 28.23269059688686 28.12741447288768 21.824954597855438 60-61 21.898499707345803 28.133433712247218 28.078646543057516 21.88942003734946 62-63 21.974950437393527 28.231769088077098 28.00353924611511 21.789741228414265 64-65 21.76109450985971 28.19227513102441 28.004545877673515 22.042084481442366 66-67 21.838985499999282 28.195091552897384 27.861340029260965 22.104582917842368 68-69 21.784608325733217 28.26523604666043 27.942113545929796 22.008042081676553 70-71 21.783586006421693 28.122613827591454 27.97888622240057 22.11491394358629 72-73 21.871425294896856 28.10549045899168 27.777414218779423 22.245670027332036 74-75 21.78410039800924 28.167448696050922 27.75659501997005 22.291855885969785 76-77 21.890544175631614 27.94515015513313 27.87933777127838 22.28496789795687 78-79 21.842694763014254 27.88632741423073 27.87892954344117 22.39204827931384 80-81 22.018610395678213 27.933810858909773 27.713207370291208 22.334371375120806 82-83 22.033148551136673 28.093757499129225 27.789111515675348 22.083982434058758 84-85 21.99002837197065 27.91317291291579 27.723574592368195 22.373224122745363 86-87 21.860980671721194 28.08790173219034 27.79054359671932 22.260573999369146 88-89 22.107595317901303 27.821241893846988 27.7798013772361 22.291361411015608 90-91 22.162733952422055 27.98028140057291 27.8040348605059 22.05294978649914 92-93 21.998063475384146 27.841852953477215 27.904355763716893 22.255727807421742 94-95 21.986945618056914 27.74764398904078 27.979696047320225 22.28571434558208 96-97 21.89560568591855 27.979721030631044 28.039795282169493 22.08487800128091 98-99 22.097600598965748 28.380344155093905 28.142536502871735 21.379518743068612 100-101 20.536157778123286 31.98512570070599 26.006510197050424 21.4722063241203 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2984.0 1 2667.0 2 3575.0 3 5046.5 4 6699.5 5 10106.5 6 13024.0 7 16196.5 8 18919.5 9 19330.0 10 18102.5 11 16788.5 12 18400.5 13 24642.0 14 40398.0 15 62465.5 16 79734.0 17 88356.5 18 89189.5 19 84706.0 20 77822.5 21 70769.0 22 67225.0 23 71572.0 24 82907.0 25 100643.0 26 124414.0 27 151101.0 28 180800.0 29 212496.5 30 243638.5 31 275433.0 32 308013.5 33 341159.5 34 371338.0 35 397049.0 36 427496.0 37 454513.5 38 470926.5 39 482372.0 40 493853.0 41 508058.5 42 515338.5 43 520194.5 44 525848.0 45 527057.5 46 523593.5 47 518446.0 48 515398.5 49 511322.0 50 500843.5 51 482003.5 52 456635.5 53 430740.5 54 405500.5 55 374377.0 56 340509.0 57 306947.0 58 271343.5 59 232996.5 60 194492.0 61 158829.0 62 125697.5 63 96128.5 64 71776.0 65 54052.5 66 41452.0 67 31638.0 68 23922.0 69 17104.0 70 11871.5 71 8215.0 72 5560.5 73 3678.5 74 2321.5 75 1463.5 76 960.5 77 598.0 78 381.0 79 255.5 80 180.5 81 137.5 82 108.0 83 67.5 84 36.5 85 24.0 86 16.5 87 11.5 88 9.0 89 9.0 90 8.5 91 7.5 92 6.0 93 3.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.015490631916041234 3 0.0 4 1.3004481114701282E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 1.3386965853368968E-4 12-13 5.928513449349114E-4 14-15 2.868635540007636E-4 16-17 0.0018129776612848258 18-19 0.0 20-21 0.0 22-23 1.9891303208566664E-4 24-25 0.009052450956835649 26-27 0.019428184439608833 28-29 0.34460860407571964 30-31 0.3199345648850818 32-33 0.3138025251544814 34-35 0.18355711297872124 36-37 0.04410067856568953 38-39 0.03571279416294911 40-41 0.014323222830771183 42-43 0.013035512257222447 44-45 0.016405585162072005 46-47 0.011026295749246627 48-49 0.006472363715734595 50-51 0.0034997058940274355 52-53 0.0012672108733934142 54-55 6.215397844301134E-5 56-57 1.7540710527408238E-4 58-59 0.0010148921312844248 60-61 8.850905938924007E-4 62-63 1.6237399671030283E-4 64-65 3.4509042016052744E-5 66-67 0.0032608973806493033 68-69 0.005371499090216112 70-71 0.007120850134205091 72-73 0.010845583817776911 74-75 0.007899795842351547 76-77 0.006013512749336652 78-79 0.003761566526465782 80-81 0.004583538470993684 82-83 0.0016150335517265233 84-85 0.0 86-87 0.0 88-89 9.922306356765257E-6 90-91 0.002465243097168086 92-93 0.01491899172249998 94-95 0.0012572078607759633 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 226.0 20-21 785.0 22-23 1770.0 24-25 4813.0 26-27 5931.0 28-29 9491.0 30-31 24794.0 32-33 32823.0 34-35 48197.0 36-37 65754.0 38-39 77612.0 40-41 84298.0 42-43 102237.0 44-45 121624.0 46-47 120276.0 48-49 104000.0 50-51 93407.0 52-53 84406.0 54-55 92614.0 56-57 98719.0 58-59 65405.0 60-61 105832.0 62-63 107915.0 64-65 117893.0 66-67 124660.0 68-69 119656.0 70-71 117955.0 72-73 115932.0 74-75 118547.0 76-77 119684.0 78-79 127587.0 80-81 130232.0 82-83 129726.0 84-85 134753.0 86-87 146069.0 88-89 157344.0 90-91 171810.0 92-93 188597.0 94-95 225113.0 96-97 344069.0 98-99 1295931.0 100-101 7733930.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.7548875061614 #Duplication Level Percentage of deduplicated Percentage of total 1 88.2197523666662 73.00615682924875 2 7.855628833712541 13.001833608480784 3 2.15782078934386 5.357106500418226 4 0.811017444970033 2.6846262969611807 5 0.38007036652105686 1.5726340212937795 6 0.19592184989696249 0.97280943889333 7 0.11780844109209462 0.6824457002896771 8 0.07184502458389272 0.47564215418539524 9 0.04894865833078897 0.3645666642367774 >10 0.13846160554152123 1.685782434257269 >50 0.0023269453472781884 0.1225075155744982 >100 3.8180566183629273E-4 0.06394804823854175 >500 1.586833193285572E-5 0.00994078792178525 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 7.649694773353696E-6 0.0 0.0 0.0 3 0.0 7.649694773353696E-6 0.0 0.0 0.0 4 0.0 3.059877909341478E-5 0.0 0.0 7.649694773353696E-6 5 0.0 6.119755818682957E-5 0.0 0.0 7.649694773353696E-6 6 0.0 6.119755818682957E-5 0.0 0.0 2.294908432006109E-5 7 0.0 6.884725296018326E-5 0.0 0.0 2.294908432006109E-5 8 0.0 9.179633728024436E-5 0.0 0.0 2.294908432006109E-5 9 0.0 9.944603205359804E-5 0.0 0.0 3.059877909341478E-5 10-11 0.0 9.944603205359804E-5 0.0 3.824847386676848E-6 3.824847386676848E-5 12-13 0.0 1.1857026898698228E-4 0.0 7.649694773353696E-6 3.824847386676848E-5 14-15 0.0 1.3004481114701282E-4 0.0 7.649694773353696E-6 4.972301602679903E-5 16-17 0.0 1.3004481114701282E-4 0.0 2.6773931706737934E-5 7.26721003468601E-5 18-19 0.0 1.4151935330704337E-4 0.0 3.442362648009163E-5 7.649694773353696E-5 20-21 0.0 1.5299389546707392E-4 0.0 6.119755818682957E-5 8.032179512021382E-5 22-23 7.649694773353696E-6 1.5299389546707392E-4 0.0 1.9506721672051924E-4 9.56211846669212E-5 24-25 7.649694773353696E-6 1.5681874285375076E-4 0.0 9.179633728024435E-4 1.0709572682695174E-4 26-27 7.649694773353696E-6 1.6446843762710445E-4 0.0 0.003040753672408094 1.0709572682695174E-4 28-29 7.649694773353696E-6 1.6829328501378132E-4 0.0 0.014893955723719645 1.0709572682695174E-4 30-31 7.649694773353696E-6 1.835926745604887E-4 0.0 0.020818644325682083 1.1092057421362858E-4 32-33 7.649694773353696E-6 1.835926745604887E-4 0.0 0.023343043600888805 1.2239511637365913E-4 34-35 7.649694773353696E-6 1.912423693338424E-4 0.0 0.02640292151023028 1.3769450592036653E-4 36-37 7.649694773353696E-6 2.1419145365390347E-4 0.0 0.03154734124531064 1.3769450592036653E-4 38-39 7.649694773353696E-6 2.2949084320061087E-4 0.0 0.04170613590432435 1.3769450592036653E-4 40-41 7.649694773353696E-6 2.4479023274731826E-4 0.0 0.06284989225787396 1.453442006937202E-4 42-43 7.649694773353696E-6 2.4479023274731826E-4 0.0 0.07213279686533867 1.529938954670739E-4 44-45 7.649694773353696E-6 2.5243992752067195E-4 0.0 0.08643390124412341 1.6829328501378132E-4 46-47 7.649694773353696E-6 2.6008962229402563E-4 0.0 0.104689897820732 1.8741752194716555E-4 48-49 7.649694773353696E-6 2.6008962229402563E-4 0.0 0.1193620123960244 1.912423693338424E-4 50-51 7.649694773353696E-6 2.6773931706737937E-4 0.0 0.13763330836217968 1.912423693338424E-4 52-53 7.649694773353696E-6 2.7156416445405624E-4 0.0 0.15949231117703788 2.065417588805498E-4 54-55 7.649694773353696E-6 3.251120278675321E-4 0.0 0.2291733808675167 2.3714053797396458E-4 56-57 7.649694773353696E-6 3.595356543476237E-4 0.0 0.28711981877567094 2.5243992752067195E-4 58-59 7.649694773353696E-6 3.824847386676848E-4 0.0 0.33320922978512696 2.600896222940257E-4 60-61 7.649694773353696E-6 3.9778412821439216E-4 0.0 0.6340526009841945 2.6773931706737937E-4 62-63 7.649694773353696E-6 4.0160897560106903E-4 0.0 0.6408187560112257 2.6773931706737937E-4 64-65 7.649694773353696E-6 4.5898168640122174E-4 0.0 0.6474127929058566 2.7156416445405624E-4 66-67 7.649694773353696E-6 4.895804654946365E-4 0.0 0.6528555507370979 2.8303870661408674E-4 68-69 7.649694773353696E-6 4.972301602679903E-4 0.0 0.6583289073474323 2.906884013874404E-4 70-71 7.649694773353696E-6 5.125295498146976E-4 0.0 0.6641044269013144 2.9833809616079416E-4 72-73 7.649694773353696E-6 5.354786341347586E-4 0.0 0.6685680238015663 3.212871804808552E-4 74-75 7.649694773353696E-6 5.431283289081124E-4 0.0 0.6726491359631506 3.212871804808552E-4 76-77 7.649694773353696E-6 5.507780236814661E-4 0.0 0.6760303010529729 3.251120278675321E-4 78-79 7.649694773353696E-6 5.660774132281735E-4 0.0 0.6792967207211948 3.289368752542089E-4 80-81 7.649694773353696E-6 5.737271080015272E-4 0.0 0.6806660160856252 3.289368752542089E-4 82-83 7.649694773353696E-6 5.737271080015272E-4 0.0 0.6811249977720264 3.480611121875932E-4 84-85 7.649694773353696E-6 5.737271080015272E-4 0.0 0.681484533426374 3.5188595957427E-4 86-87 7.649694773353696E-6 5.737271080015272E-4 0.0 0.6816490018640011 3.5188595957427E-4 88-89 7.649694773353696E-6 5.890264975482346E-4 0.0 0.6817407982012814 3.595356543476237E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 17015 0.0 50.359283 1 GTATCAA 32070 0.0 37.153374 1 TCAACGC 39765 0.0 29.499277 4 ATCAACG 39700 0.0 29.472195 3 CAACGCA 40330 0.0 29.054302 5 TATCAAC 41315 0.0 28.550705 2 AACGCAG 41735 0.0 28.189295 6 ACGCAGA 48020 0.0 24.490921 7 CGCAGAG 48490 0.0 24.192001 8 GCAGAGT 56140 0.0 20.78922 9 GTACATG 36170 0.0 19.788717 1 GTGGTAT 8775 0.0 19.383902 1 GAGTACT 35340 0.0 19.190445 12-13 TACATGG 36905 0.0 19.175129 2 AGAGTAC 51710 0.0 19.112562 10-11 ACATGGG 36915 0.0 18.497808 3 CAGAGTA 55165 0.0 18.18599 10-11 TGGTATC 8985 0.0 17.46004 2 AGTACTT 38660 0.0 17.415628 12-13 GTACTTT 39435 0.0 17.181921 14-15 >>END_MODULE