##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139087_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9400065 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.575869315797284 34.0 31.0 34.0 31.0 34.0 2 32.71218401149354 34.0 31.0 34.0 31.0 34.0 3 32.696603800080105 34.0 31.0 34.0 31.0 34.0 4 36.22471546739305 37.0 35.0 37.0 35.0 37.0 5 36.1818300192605 37.0 35.0 37.0 35.0 37.0 6 36.22619013804692 37.0 37.0 37.0 35.0 37.0 7 36.186137542665925 37.0 37.0 37.0 35.0 37.0 8 36.16037474208955 37.0 37.0 37.0 35.0 37.0 9 37.89395126523061 39.0 38.0 39.0 35.0 39.0 10-11 37.82218761253247 39.0 38.0 39.0 35.0 39.0 12-13 37.79538710636575 39.0 38.0 39.0 35.0 39.0 14-15 39.14304698956869 40.0 39.0 41.0 36.0 41.0 16-17 39.11184396065347 40.0 38.0 41.0 36.0 41.0 18-19 39.07095488169497 40.0 38.5 41.0 36.0 41.0 20-21 39.05222952487141 40.0 39.0 41.0 36.0 41.0 22-23 38.937833743228175 40.0 38.0 41.0 35.0 41.0 24-25 38.80399835997517 40.0 38.0 41.0 35.0 41.0 26-27 38.754894989355975 40.0 38.0 41.0 34.5 41.0 28-29 38.7020909446553 40.0 38.0 41.0 35.0 41.0 30-31 38.6322766086801 40.0 38.0 41.0 35.0 41.0 32-33 38.519839395745294 40.0 38.0 41.0 34.0 41.0 34-35 38.32808165609932 40.0 38.0 41.0 34.0 41.0 36-37 38.46586157963415 40.0 38.0 41.0 34.0 41.0 38-39 38.447693722102116 40.0 38.0 41.0 34.0 41.0 40-41 38.40951229354894 40.0 38.0 41.0 34.0 41.0 42-43 38.44023012308939 40.0 38.0 41.0 34.0 41.0 44-45 38.373869036010085 40.0 38.0 41.0 34.0 41.0 46-47 38.313810180450176 40.0 38.0 41.0 34.0 41.0 48-49 38.15161313062987 40.0 38.0 41.0 33.0 41.0 50-51 38.1493103496287 40.0 37.5 41.0 33.0 41.0 52-53 38.05086266574246 40.0 37.0 41.0 33.0 41.0 54-55 37.89970057630589 40.0 37.0 41.0 33.0 41.0 56-57 37.7274296267077 40.0 36.5 41.0 33.0 41.0 58-59 37.557816277747015 39.0 36.0 41.0 33.0 41.0 60-61 37.37187557829524 39.0 36.0 41.0 32.0 41.0 62-63 37.15354326532521 39.0 35.0 40.5 32.0 41.0 64-65 36.85388673075123 38.0 35.0 40.0 31.5 41.0 66-67 36.49155315937274 38.0 35.0 40.0 31.0 41.0 68-69 36.1477564031686 37.0 35.0 40.0 31.0 41.0 70-71 35.84127637605722 37.0 34.0 39.0 30.5 41.0 72-73 35.50916888489564 36.0 34.0 39.0 30.0 40.5 74-75 35.13894947965133 36.0 34.0 38.5 30.0 40.0 76-77 34.19059626798409 35.0 33.0 37.0 29.0 39.0 78-79 34.47063198662147 35.0 34.0 37.0 29.5 39.0 80-81 34.271918493625606 35.0 34.0 36.5 29.5 39.0 82-83 33.99683252860354 35.0 33.5 36.0 29.0 38.0 84-85 33.760481535373174 35.0 33.0 36.0 29.0 37.0 86-87 33.529371150263984 35.0 33.0 35.0 29.0 37.0 88-89 33.29848413328919 35.0 33.0 35.0 29.0 36.0 90-91 33.11415453126928 35.0 33.0 35.0 29.0 36.0 92-93 33.03094854953755 35.0 33.0 35.0 29.0 36.0 94-95 32.95394039913964 34.0 32.5 35.0 29.0 35.5 96-97 32.938676262271386 34.0 32.0 35.0 29.0 35.0 98-99 33.06828035564861 34.0 32.5 35.0 29.0 35.0 100-101 31.219420937629977 32.5 29.0 34.5 24.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 6.0 20 42.0 21 202.0 22 1062.0 23 3843.0 24 9828.0 25 21296.0 26 38219.0 27 62030.0 28 90044.0 29 124221.0 30 161712.0 31 206758.0 32 264775.0 33 346524.0 34 483277.0 35 699738.0 36 1160816.0 37 2116628.0 38 2472943.0 39 1078359.0 40 57741.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.695176830197845 21.323016664888307 15.69571395425754 24.28609255065631 2 13.746671336831987 21.711055226123534 41.26259167788457 23.279681759159914 3 17.051438910569004 26.490865008032394 31.227854536719597 25.22984154467901 4 12.094851845985058 18.802104116691307 38.845286870313124 30.257757167010514 5 13.040859407006103 37.937458504267475 35.65829292846229 13.363389160264138 6 29.750574038644846 38.35898351330374 18.610128611890303 13.280313836161115 7 26.207526481471454 33.038204105653335 23.094143092445233 17.66012632042998 8 24.40176198819093 36.95522040650153 20.912998136289087 17.73001946901845 9 25.42233755004221 16.97005467196819 21.3194505909747 36.288157187014896 10-11 23.97060908937815 27.052773873838316 28.908881219661726 20.067735817121804 12-13 24.853918983992195 24.627637225570005 29.06685224100643 21.451591549431377 14-15 21.9898508953312 26.019413106815172 26.8241010863676 25.166634911486025 16-17 21.455257939463056 29.137520904522184 27.48712217602778 21.920098979986978 18-19 21.49096841351629 28.21533680884122 29.375068151124488 20.91862662651801 20-21 22.220277737646928 27.251232631822404 29.45719305270768 21.07129657782299 22-23 21.95713897988142 27.21612963251997 29.259458568634543 21.567272818964067 24-25 21.781320519554434 27.36110689118237 29.28119427643216 21.576378312831043 26-27 21.72365638832886 27.47323939718196 29.219978886537685 21.5831253279515 28-29 21.673838488391308 27.507268037885428 29.23720344206837 21.581690031654894 30-31 21.909227428560307 27.41680836631282 29.134463112992993 21.539501092133882 32-33 21.738526567525405 27.52420763638191 29.10503011271526 21.63223568337743 34-35 21.87729316798049 27.55153671283833 29.08360488875926 21.487565230421918 36-37 21.838503027448006 27.51497677316022 29.024031915757742 21.62248828363403 38-39 21.774122578250388 27.64809119722341 29.007766788781364 21.57001943574484 40-41 22.006329113236532 27.499733046207286 28.871522499126357 21.622415341429825 42-43 21.828454351881792 27.653125856098303 28.67219576356918 21.846224028450724 44-45 21.96100531087654 27.697169576449344 28.492029828704275 21.84979528396984 46-47 22.030558787833638 27.74823108061002 28.15684353729394 22.064366594262403 48-49 21.970576489288813 27.90862439874548 28.07245288402797 22.04834622793774 50-51 22.003386816169577 27.98699751936767 27.959826132510806 22.04978953195195 52-53 22.145023623601922 27.89412666074334 27.865226974065106 22.09562274158963 54-55 22.082920322296363 27.804447072239498 27.91980572235716 22.192826883106974 56-57 22.11374689267518 27.904855525258448 27.86486465284485 22.11653292922152 58-59 22.059774224953067 27.967481782061665 27.89584904379651 22.07689494918876 60-61 22.123933501968462 27.87017314654972 27.93408885047989 22.071804501001928 62-63 22.199795688402382 27.93156556484691 27.91572791290775 21.952910833842953 64-65 22.014905080508857 27.88752983711565 27.889002248752547 22.208562833622945 66-67 22.079131473912085 27.927368231728263 27.72923658694793 22.26426370741172 68-69 22.010163334462565 28.04318775674759 27.80380378272308 22.142845126066764 70-71 22.025462256363866 27.877807765079467 27.82345539882347 22.27327457973319 72-73 22.044722263550476 27.89596560902475 27.6385380787067 22.42077404871808 74-75 21.981395712281284 27.930746102587978 27.6289331874628 22.458924997667935 76-77 22.134627844425538 27.731132528524977 27.73500337298463 22.39923625406486 78-79 22.064711336014003 27.695049619299816 27.697873342286993 22.542365702399188 80-81 22.21934451689516 27.78993602918941 27.5346084619286 22.45611099198683 82-83 22.26358229004646 27.894820184435957 27.604233486340355 22.237364039177223 84-85 22.16947704403199 27.72396624255936 27.59146809058242 22.51508862282623 86-87 22.057128475248703 27.896684067863536 27.654285735424356 22.391901721463405 88-89 22.23772452661882 27.659138520590897 27.653164659611562 22.449972293178718 90-91 22.306104486251094 27.832336928405127 27.6794112085331 22.182147376810676 92-93 22.180046911850564 27.691128377704892 27.745691812985836 22.38313289745871 94-95 22.16902579700808 27.582202545523444 27.81615594444904 22.43261571301944 96-97 22.08922180822536 27.783088017756608 27.90528068892502 22.22240948509301 98-99 22.265998084277943 28.24258233802585 27.98854561054615 21.50287396715005 100-101 20.788771108380335 31.824017110288878 25.802922800914008 21.58428898041678 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2429.0 1 2092.5 2 2494.5 3 3417.5 4 4511.0 5 6680.0 6 8609.0 7 10990.0 8 13427.5 9 14165.0 10 13207.0 11 11994.0 12 13048.5 13 17625.5 14 28650.0 15 43775.0 16 55682.0 17 61649.0 18 61994.0 19 58244.0 20 52637.5 21 47032.5 22 43772.0 23 45858.0 24 53171.5 25 65184.5 26 80738.0 27 97907.5 28 117323.0 29 138368.5 30 159614.5 31 181009.0 32 203267.0 33 225912.0 34 246864.0 35 266179.5 36 288528.0 37 307865.0 38 322657.0 39 335756.5 40 347369.0 41 358998.5 42 365145.5 43 369832.5 44 376574.0 45 381338.5 46 382034.5 47 380410.0 48 378708.0 49 375104.5 50 367650.5 51 354973.5 52 337405.0 53 319095.0 54 301511.0 55 281959.5 56 259605.5 57 235133.0 58 208484.0 59 178903.0 60 148204.5 61 120163.0 62 95004.5 63 72219.0 64 53476.0 65 39948.5 66 30001.5 67 22639.0 68 17000.0 69 12164.5 70 8575.0 71 6062.5 72 4209.0 73 2835.5 74 1819.5 75 1156.5 76 746.0 77 475.5 78 298.0 79 186.0 80 119.0 81 86.5 82 70.0 83 49.5 84 35.0 85 27.5 86 24.0 87 23.5 88 18.0 89 10.5 90 5.0 91 2.5 92 1.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.1276448620302095E-5 2 0.014861599361281012 3 2.1276448620302095E-5 4 1.7021158896241676E-4 5 2.1276448620302095E-5 6 1.0638224310151048E-5 7 2.1276448620302095E-5 8 2.1276448620302095E-5 9 1.0638224310151048E-5 10-11 1.7021158896241676E-4 12-13 6.223361221438363E-4 14-15 2.553173834436251E-4 16-17 0.0019680714973779436 18-19 0.0 20-21 0.0 22-23 1.7554798500437195E-4 24-25 0.009135495844067674 26-27 0.019218914775848694 28-29 0.3411444763816461 30-31 0.3174251077301632 32-33 0.3112004114951444 34-35 0.18283428474758837 36-37 0.04380411671647737 38-39 0.035593684402664964 40-41 0.013924195679480656 42-43 0.012619195791604775 44-45 0.016508541972403357 46-47 0.011473656673282179 48-49 0.006325716882334543 50-51 0.0029611865858925794 52-53 0.0011038545634058897 54-55 7.44507439318778E-5 56-57 1.3266823095970065E-4 58-59 8.426626256054022E-4 60-61 7.125706218814084E-4 62-63 1.2363950911111317E-4 64-65 4.155998860781341E-5 66-67 0.0033261564266795864 68-69 0.005337244892401869 70-71 0.006648464458305053 72-73 0.010403146612483097 74-75 0.007557993110450007 76-77 0.005311901113044682 78-79 0.0033832653267324895 80-81 0.00443105538285444 82-83 0.0015548547215961058 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0023533869114225644 92-93 0.014453696004086955 94-95 0.0012953353124918153 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 154.0 20-21 530.0 22-23 1151.0 24-25 2979.0 26-27 3932.0 28-29 6174.0 30-31 16395.0 32-33 21875.0 34-35 31598.0 36-37 43676.0 38-39 51109.0 40-41 56140.0 42-43 67444.0 44-45 81747.0 46-47 80872.0 48-49 70657.0 50-51 62066.0 52-53 55733.0 54-55 61223.0 56-57 64171.0 58-59 42753.0 60-61 68364.0 62-63 69491.0 64-65 76576.0 66-67 80468.0 68-69 80267.0 70-71 79825.0 72-73 78061.0 74-75 80512.0 76-77 80411.0 78-79 86837.0 80-81 89065.0 82-83 89167.0 84-85 92850.0 86-87 100107.0 88-89 109360.0 90-91 120226.0 92-93 132533.0 94-95 160246.0 96-97 249511.0 98-99 951763.0 100-101 5702046.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.29355039186173 #Duplication Level Percentage of deduplicated Percentage of total 1 90.7020682228229 78.27003494832249 2 6.564779506304077 11.32996262277424 3 1.5197155426254667 3.9342494927653857 4 0.5527525836494238 1.9079593172553324 5 0.2641931823312108 1.1399083846342328 6 0.12512766296214572 0.6478626173543888 7 0.07354773889032673 0.44426868584979284 8 0.04809968597091341 0.33205541401309924 9 0.03490213191307802 0.27106459911221426 >10 0.1118606900430193 1.503868805458252 >50 0.002454907153536102 0.13929967179255937 >100 4.785737369780053E-4 0.06850446292867075 >500 1.9571596852675352E-5 0.010960977739368475 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.0638224310151048E-5 0.0 0.0 0.0 3 0.0 1.0638224310151048E-5 0.0 1.0638224310151048E-5 0.0 4 0.0 8.510579448120838E-5 0.0 1.0638224310151048E-5 0.0 5 0.0 8.510579448120838E-5 0.0 1.0638224310151048E-5 0.0 6 4.255289724060419E-5 8.510579448120838E-5 0.0 1.0638224310151048E-5 0.0 7 4.255289724060419E-5 9.574401879135942E-5 0.0 3.191467293045314E-5 0.0 8 4.255289724060419E-5 9.574401879135942E-5 0.0 3.191467293045314E-5 0.0 9 4.255289724060419E-5 1.7021158896241676E-4 0.0 5.319112155075523E-5 0.0 10-11 4.7872009395679715E-5 1.7021158896241676E-4 0.0 9.04249066362839E-5 0.0 12-13 5.319112155075523E-5 1.7021158896241676E-4 0.0 1.0638224310151046E-4 0.0 14-15 6.382934586090628E-5 2.8191294421900273E-4 0.0 1.0638224310151046E-4 5.319112155075524E-6 16-17 8.510579448120838E-5 2.925511685291538E-4 0.0 1.1702046741166151E-4 1.0638224310151048E-5 18-19 8.510579448120838E-5 3.45742290079909E-4 0.0 1.382969160319636E-4 1.595733646522657E-5 20-21 8.510579448120838E-5 4.042525237857398E-4 0.0 1.7021158896241673E-4 2.1276448620302095E-5 22-23 8.510579448120838E-5 4.734009818017216E-4 0.0 3.4042317792483347E-4 2.1276448620302095E-5 24-25 9.04249066362839E-5 5.478685519727789E-4 0.0 9.04249066362839E-4 2.1276448620302095E-5 26-27 9.574401879135942E-5 5.744641127481565E-4 0.0 0.0027712574327943477 2.1276448620302095E-5 28-29 9.574401879135942E-5 5.79783224903232E-4 0.0 0.014425432164564819 2.1276448620302095E-5 30-31 9.574401879135942E-5 6.70208131539516E-4 0.0 0.020563687591521974 2.1276448620302095E-5 32-33 9.574401879135942E-5 6.80846355849667E-4 0.0 0.022382823948557805 2.1276448620302095E-5 34-35 9.574401879135942E-5 7.659521503308753E-4 0.0 0.025148762269197072 2.1276448620302095E-5 36-37 9.574401879135942E-5 8.404197205019327E-4 0.0 0.029643412040235892 2.1276448620302095E-5 38-39 1.0106313094643493E-4 8.776535055874614E-4 0.0 0.038419947096110504 2.1276448620302095E-5 40-41 1.0638224310151046E-4 9.893548608440473E-4 0.0 0.057042158751029914 2.1276448620302095E-5 42-43 1.1702046741166151E-4 0.001037226870239727 0.0 0.06483465805821556 2.1276448620302095E-5 44-45 1.2233957956673703E-4 0.0012127575713572194 0.0 0.07736116718341841 2.1276448620302095E-5 46-47 1.2765869172181256E-4 0.001351054487389183 0.0 0.09404722201389033 2.1276448620302095E-5 48-49 1.2765869172181256E-4 0.001361692711699334 0.0 0.10738755529881974 2.1276448620302095E-5 50-51 1.542542524971902E-4 0.0014680749548008445 0.0 0.12376510162429727 2.1276448620302095E-5 52-53 1.7021158896241676E-4 0.001484032291266071 0.0 0.14259475865326462 2.1276448620302095E-5 54-55 1.7553070111749226E-4 0.001505308739886373 0.0 0.20359965595982582 2.1276448620302095E-5 56-57 1.808498132725678E-4 0.0015319043006617507 0.0 0.2543865388164869 2.1276448620302095E-5 58-59 1.808498132725678E-4 0.0015531807492820528 0.0 0.29552987133599606 2.1276448620302095E-5 60-61 1.9148803758271883E-4 0.0015584998614371283 0.0 0.5726077426060352 3.191467293045314E-5 62-63 2.1276448620302093E-4 0.0015638189735922038 0.0 0.5783417455092066 3.191467293045314E-5 64-65 2.1808359835809646E-4 0.0017712643476401493 0.0 0.5845757449549551 3.191467293045314E-5 66-67 2.23402710513172E-4 0.001797859908415527 0.0 0.5898044322033944 3.191467293045314E-5 68-69 2.23402710513172E-4 0.001840412805656131 0.0 0.5944533362269303 4.7872009395679715E-5 70-71 2.553173834436251E-4 0.0018776465907416598 0.0 0.5989958580073649 5.319112155075523E-5 72-73 3.191467293045314E-4 0.0018936039272068864 0.0 0.602814980534709 5.319112155075523E-5 74-75 3.191467293045314E-4 0.001930837712292415 0.0 0.6062032549774922 5.319112155075523E-5 76-77 3.191467293045314E-4 0.0019787097216880946 0.0 0.6091500431114041 5.319112155075523E-5 78-79 3.191467293045314E-4 0.0020053052824634725 0.0 0.6120915121331608 5.319112155075523E-5 80-81 3.191467293045314E-4 0.002010624394618548 0.0 0.6133468226017587 5.319112155075523E-5 82-83 3.191467293045314E-4 0.002015943506773623 0.0 0.6138149044714052 5.319112155075523E-5 84-85 3.191467293045314E-4 0.002021262618928699 0.0 0.6140914983034692 5.319112155075523E-5 86-87 3.191467293045314E-4 0.002063815516169303 0.0 0.6142404334438112 5.319112155075523E-5 88-89 3.191467293045314E-4 0.0021701977592708138 0.0 0.6142723481167417 5.319112155075523E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11880 0.0 52.794147 1 GTATCAA 22495 0.0 39.836178 1 TCAACGC 28600 0.0 30.878622 4 ATCAACG 28750 0.0 30.702415 3 CAACGCA 29515 0.0 29.92119 5 TATCAAC 29840 0.0 29.814873 2 AACGCAG 30600 0.0 28.889101 6 ACGCAGA 34710 0.0 25.443602 7 CGCAGAG 35225 0.0 25.059414 8 GTGGTAT 5495 0.0 23.453241 1 GCAGAGT 40980 0.0 21.393694 9 TGGTATC 5425 0.0 20.984459 2 CGAGACC 6890 0.0 20.365095 88-89 GTACATG 27115 0.0 20.279148 1 GAGACCG 6975 0.0 19.993248 88-89 AGACCGA 6975 0.0 19.901024 90-91 GACCGAG 7195 0.0 19.825005 90-91 GAGTACT 24870 0.0 19.699018 12-13 AGAGTAC 36965 0.0 19.656824 10-11 TACATGG 27760 0.0 19.59142 2 >>END_MODULE