##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139086_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11271375 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.5749688924377 34.0 31.0 34.0 31.0 34.0 2 32.711888212396445 34.0 31.0 34.0 31.0 34.0 3 32.697131450244534 34.0 31.0 34.0 31.0 34.0 4 36.22432356300806 37.0 35.0 37.0 35.0 37.0 5 36.183306207095406 37.0 35.0 37.0 35.0 37.0 6 36.22658575373457 37.0 37.0 37.0 35.0 37.0 7 36.18677667986381 37.0 37.0 37.0 35.0 37.0 8 36.16349061228111 37.0 37.0 37.0 35.0 37.0 9 37.89788787969525 39.0 38.0 39.0 35.0 39.0 10-11 37.82749935123266 39.0 38.0 39.0 35.0 39.0 12-13 37.79863344090673 39.0 38.0 39.0 35.0 39.0 14-15 39.14536735757616 40.0 39.0 41.0 36.0 41.0 16-17 39.11367628173138 40.0 38.0 41.0 36.0 41.0 18-19 39.077229264397644 40.0 38.5 41.0 36.0 41.0 20-21 39.06299594127053 40.0 39.0 41.0 36.0 41.0 22-23 38.94801968140101 40.0 38.0 41.0 35.0 41.0 24-25 38.8135642852436 40.0 38.0 41.0 35.0 41.0 26-27 38.764065241653185 40.0 38.0 41.0 34.5 41.0 28-29 38.703104511398465 40.0 38.0 41.0 35.0 41.0 30-31 38.63448820871925 40.0 38.0 41.0 35.0 41.0 32-33 38.521749912812155 40.0 38.0 41.0 34.0 41.0 34-35 38.328016194803766 40.0 38.0 41.0 34.0 41.0 36-37 38.46642416196812 40.0 38.0 41.0 34.0 41.0 38-39 38.446191990878575 40.0 38.0 41.0 34.0 41.0 40-41 38.41641126393743 40.0 38.0 41.0 34.0 41.0 42-43 38.44933203184979 40.0 38.0 41.0 34.0 41.0 44-45 38.38328794120717 40.0 38.0 41.0 34.0 41.0 46-47 38.3224737004261 40.0 38.0 41.0 34.0 41.0 48-49 38.15866038569867 40.0 38.0 41.0 33.0 41.0 50-51 38.153963179308164 40.0 37.0 41.0 33.0 41.0 52-53 38.06210229553767 40.0 37.0 41.0 33.0 41.0 54-55 37.911622220737115 40.0 37.0 41.0 33.0 41.0 56-57 37.74370033303633 40.0 36.5 41.0 33.0 41.0 58-59 37.57597070275386 39.0 36.0 41.0 33.0 41.0 60-61 37.39597788904296 39.0 36.0 41.0 32.0 41.0 62-63 37.18209943232203 39.0 35.0 40.5 32.0 41.0 64-65 36.887455527531934 38.0 35.0 40.0 31.5 41.0 66-67 36.53578606356787 38.0 35.0 40.0 31.0 41.0 68-69 36.195872905320755 37.0 35.0 40.0 31.0 41.0 70-71 35.89074170202831 37.0 34.5 39.0 31.0 41.0 72-73 35.562288130919654 36.0 34.0 39.0 30.0 40.5 74-75 35.19360150878482 36.0 34.0 38.5 30.0 40.0 76-77 34.23514948829306 35.0 33.0 37.0 29.0 39.0 78-79 34.519094909063746 35.0 34.0 37.0 30.0 39.0 80-81 34.32164529913649 35.0 34.0 37.0 30.0 39.0 82-83 34.047567247973504 35.0 34.0 36.0 29.0 38.5 84-85 33.80586592959169 35.0 33.0 36.0 29.0 37.0 86-87 33.574668175990695 35.0 33.0 35.5 29.0 37.0 88-89 33.34266509001867 35.0 33.0 35.0 29.0 36.5 90-91 33.15903847706767 35.0 33.0 35.0 29.0 36.0 92-93 33.07467837794773 35.0 33.0 35.0 29.0 36.0 94-95 32.99671510645958 34.0 33.0 35.0 29.0 35.5 96-97 32.97993049368901 34.0 32.0 35.0 29.0 35.0 98-99 33.100876694476625 34.0 32.5 35.0 29.0 35.0 100-101 31.241621275122064 32.5 29.0 34.5 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 9.0 20 50.0 21 264.0 22 1374.0 23 4564.0 24 12135.0 25 25328.0 26 46328.0 27 73561.0 28 107197.0 29 146736.0 30 191533.0 31 243253.0 32 310602.0 33 407049.0 34 567248.0 35 823637.0 36 1372164.0 37 2531736.0 38 2986229.0 39 1346919.0 40 73458.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.489554291290986 21.559836311009086 15.74166417140766 24.208945226292265 2 13.631959593969798 21.744772775975733 41.50356645153047 23.119701178524004 3 16.78784531612159 26.8142706635171 31.53263022479511 24.865253795566204 4 11.918981248590455 19.015814054835943 39.03056648147172 30.03463821510188 5 12.807700923800336 38.14201905268878 35.87159508045824 13.178684943052643 6 29.34971110445709 38.70669727517716 18.73828170919697 13.205309911168781 7 25.870330815894242 33.218218717769574 23.278340042807557 17.633110423528628 8 24.277934147342272 36.96755719688148 21.175065153985205 17.579443501791044 9 25.291404109968834 16.940728172028702 21.43434141797252 36.333526300029945 10-11 23.800394051914335 27.12213679674343 29.11194148530911 19.96552766603313 12-13 24.676499075483505 24.6802164826284 29.176025616217906 21.467258825670196 14-15 21.86992698338356 26.09436758553565 26.923896394381195 25.11180903669959 16-17 21.30819793403861 29.288102236777746 27.546388489073315 21.85731134011033 18-19 21.343030464339975 28.309101595856763 29.405374233400984 20.942493706402278 20-21 22.175878405876425 27.413481824398055 29.34874157034411 21.061898199381407 22-23 21.892712953842693 27.367507182895174 29.21454561006451 21.52523425319762 24-25 21.698762409641205 27.50766357597097 29.33539710075262 21.458176913635203 26-27 21.678942474368643 27.68686135259341 29.211856962959033 21.42233921007891 28-29 21.493212447881383 27.63265465090609 29.25950679298868 21.61462610822384 30-31 21.888630024510828 27.554920576959002 29.156885296193625 21.399564102336544 32-33 21.774106992449855 27.626510799290966 29.12689217152501 21.47249003673417 34-35 21.667537943034187 27.660939333478503 29.253696972853856 21.417825750633455 36-37 21.7692237596126 27.611002610052548 29.0947344580104 21.52503917232444 38-39 21.63816194717377 27.715718648386982 29.110312470568196 21.535806933871047 40-41 21.817371904899336 27.593964552286632 29.022574286930357 21.566089255883675 42-43 21.769576006351166 27.694985263728416 28.82045047480699 21.714988255113425 44-45 21.793921105632847 27.881426966424666 28.561251172158364 21.763400755784122 46-47 21.954458321063917 27.720640444137846 28.24423524391286 22.08066599088537 48-49 21.92747942379342 27.83713548866421 28.22422717268563 22.011157914856735 50-51 21.82964957363533 28.00877936056757 28.1271098313953 22.034461234401807 52-53 22.002157019044322 27.950971168875586 28.045062945486098 22.00180886659399 54-55 21.9890345793375 27.884308525391006 27.98142215054163 22.145234744729866 56-57 22.04780804290084 28.0664638909015 27.848922696467177 22.03680536973048 58-59 21.896103026334636 28.144422008637854 28.03873084298809 21.92074412203942 60-61 21.99332734160119 28.10353430377925 27.928642358194967 21.974495996424597 62-63 22.05735690430562 28.232891809760257 27.856843159698236 21.85290812623589 64-65 21.864535577991 28.13198164634731 27.889017415728457 22.114465359933238 66-67 21.97881149180291 28.122894600989962 27.727361359933226 22.1709325472739 68-69 21.909068609556098 28.179007121317657 27.827838450353536 22.084085818772706 70-71 21.905152195626172 27.95706635290585 27.90829548260524 22.22948596886274 72-73 22.008418605422566 27.99369366052142 27.67762044322954 22.320267290826475 74-75 21.897465809290768 28.062194528221955 27.62204644751734 22.418293214969935 76-77 22.007735350768133 27.836852619384405 27.75556828320879 22.399843746638666 78-79 21.948596005045626 27.833458390193876 27.730637050359846 22.487308554400652 80-81 22.14969971958724 27.849151137074614 27.55772620804919 22.44342293528896 82-83 22.213313606140915 27.958119840709756 27.657852262553323 22.17071429059601 84-85 22.14720752743844 27.748191099993846 27.589229146375704 22.51537222619201 86-87 21.960683971168343 27.983815547740843 27.663216423960723 22.392284057130095 88-89 22.2003603653169 27.717078840228876 27.706659881161972 22.375900913292256 90-91 22.27823531743355 27.87870928553639 27.722151740219942 22.120903656810125 92-93 22.11749106866089 27.79272470604846 27.724154669081756 22.365629556208894 94-95 22.11221126099049 27.63087480357726 27.823492304480858 22.433421630951393 96-97 22.01562873827343 27.906107450269047 27.923648698517393 22.154615112940128 98-99 22.21047528132986 28.28027804240249 28.02562150717914 21.483625169088512 100-101 20.706392832097173 31.909514355121164 25.839751419620683 21.54434139316098 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2777.0 1 2369.5 2 2970.0 3 4231.5 4 5705.5 5 8621.5 6 11084.0 7 13591.0 8 15765.5 9 16132.0 10 14871.0 11 13779.0 12 15546.5 13 21236.5 14 34943.5 15 53614.0 16 68301.0 17 76253.0 18 77065.0 19 72200.5 20 65060.5 21 58136.0 22 54236.0 23 56511.5 24 65526.5 25 80945.0 26 101718.0 27 124341.5 28 147892.5 29 173128.0 30 197860.5 31 223766.5 32 252890.5 33 282066.5 34 308621.0 35 333627.5 36 360532.0 37 383304.0 38 399151.5 39 412395.5 40 426226.0 41 438102.5 42 443922.5 43 450135.0 44 455338.0 45 457067.0 46 457532.5 47 454625.5 48 451816.0 49 452508.0 50 449167.0 51 432009.5 52 407021.0 53 383874.5 54 359269.5 55 330534.0 56 299647.0 57 268128.5 58 236785.0 59 203824.0 60 170234.0 61 138134.5 62 108254.0 63 82603.0 64 61418.5 65 45754.5 66 34894.5 67 27181.5 68 21100.5 69 15591.0 70 11265.0 71 8027.0 72 5573.0 73 3743.5 74 2456.5 75 1574.5 76 1014.5 77 654.0 78 437.5 79 299.5 80 203.5 81 140.5 82 100.5 83 68.5 84 45.5 85 36.0 86 29.5 87 23.5 88 14.0 89 7.5 90 5.0 91 4.0 92 5.0 93 4.5 94 2.5 95 1.5 96 1.0 97 0.5 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.01570349668962305 3 0.0 4 7.98482882523206E-5 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 1.5526056049062337E-4 12-13 6.920184981867785E-4 14-15 3.238291690233002E-4 16-17 0.0018276385977753378 18-19 0.0 20-21 0.0 22-23 2.440062201178337E-4 24-25 0.009336050194936638 26-27 0.019326194063840094 28-29 0.3485923839535954 30-31 0.32421192520228403 32-33 0.31770468697260235 34-35 0.1863121162103065 36-37 0.043820411566543614 38-39 0.035549094634359256 40-41 0.014348782567268027 42-43 0.012990827397855965 44-45 0.01647385135426483 46-47 0.011025554770327227 48-49 0.0063067193845167836 50-51 0.0031815126842933833 52-53 0.0011589049997880112 54-55 7.203913396282089E-5 56-57 1.742611279767915E-4 58-59 8.737554659139938E-4 60-61 8.787229318359895E-4 62-63 1.9812328706939947E-4 64-65 5.000393280931545E-5 66-67 0.003345782474407291 68-69 0.0053184418324418005 70-71 0.007015450717155611 72-73 0.010763574437053062 74-75 0.007871305109804706 76-77 0.0059209190970300205 78-79 0.0036172682573137314 80-81 0.004683492822601708 82-83 0.0016644817129126191 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.002619118529256689 92-93 0.015378217397542552 94-95 0.001316715656945077 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 170.0 20-21 710.0 22-23 1447.0 24-25 3520.0 26-27 4688.0 28-29 8011.0 30-31 21008.0 32-33 28304.0 34-35 41384.0 36-37 56218.0 38-39 66673.0 40-41 72582.0 42-43 87768.0 44-45 104786.0 46-47 103311.0 48-49 89432.0 50-51 79202.0 52-53 71410.0 54-55 79318.0 56-57 86231.0 58-59 57231.0 60-61 90973.0 62-63 93290.0 64-65 101837.0 66-67 109834.0 68-69 101270.0 70-71 98818.0 72-73 97169.0 74-75 99940.0 76-77 99681.0 78-79 106452.0 80-81 109788.0 82-83 108521.0 84-85 112748.0 86-87 120868.0 88-89 131218.0 90-91 144212.0 92-93 157892.0 94-95 189339.0 96-97 290653.0 98-99 1115363.0 100-101 6728105.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.53316415079561 #Duplication Level Percentage of deduplicated Percentage of total 1 89.41377228071119 75.58429089547218 2 7.31711011949362 12.370769416812037 3 1.8406158624005953 4.667792485046033 4 0.6601593639832767 2.2322143952513263 5 0.30288497202361375 1.280191252944064 6 0.1577848088559067 0.8002829488510962 7 0.08292828927683302 0.4907133483128232 8 0.057790649554339026 0.3908181172126436 9 0.039151500551576034 0.29786402005887075 >10 0.12473044259576963 1.5773397389298487 >50 0.0024542715361578022 0.14005504234816288 >100 4.973107705978033E-4 0.07896221206767058 >500 8.58096420994423E-5 0.04700338608606778 >1k 3.431860438290524E-5 0.04170274060710672 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.7744064056071243E-5 0.0 0.0 0.0 3 0.0 1.7744064056071243E-5 0.0 8.872032028035622E-6 0.0 4 0.0 5.323219216821373E-5 0.0 2.6616096084106865E-5 0.0 5 0.0 8.872032028035621E-5 0.0 2.6616096084106865E-5 0.0 6 3.5488128112142486E-5 8.872032028035621E-5 0.0 3.5488128112142486E-5 0.0 7 3.5488128112142486E-5 8.872032028035621E-5 0.0 3.5488128112142486E-5 0.0 8 3.5488128112142486E-5 9.759235230839183E-5 0.0 5.323219216821373E-5 0.0 9 3.5488128112142486E-5 1.4195251244856995E-4 0.0 7.984828825232058E-5 0.0 10-11 3.5488128112142486E-5 1.4638852846258777E-4 0.0 1.242084483924987E-4 0.0 12-13 3.5488128112142486E-5 1.5082454447660557E-4 0.0 1.4638852846258777E-4 0.0 14-15 5.7668208182231535E-5 2.1736478468687272E-4 0.0 1.5969657650464117E-4 4.436016014017811E-6 16-17 1.1533641636446307E-4 2.2180080070089054E-4 0.0 1.9518470461678367E-4 8.872032028035622E-6 18-19 1.1533641636446307E-4 2.3954486475696177E-4 0.0 2.7946900888312207E-4 8.872032028035622E-6 20-21 1.1533641636446307E-4 2.617249448270508E-4 0.0 3.5044526510740707E-4 8.872032028035622E-6 22-23 1.1533641636446307E-4 2.705969768550864E-4 0.0 5.234498896541017E-4 1.3308048042053432E-5 24-25 1.1533641636446307E-4 2.839050248971399E-4 0.0 0.0012509565159530226 1.7744064056071243E-5 26-27 1.1533641636446307E-4 2.927770569251755E-4 0.0 0.0037395614998170144 1.7744064056071243E-5 28-29 1.1533641636446307E-4 2.927770569251755E-4 0.0 0.0168612968692817 1.7744064056071243E-5 30-31 1.1533641636446307E-4 3.371372170653536E-4 0.0 0.02330239212163556 1.7744064056071243E-5 32-33 1.1977243237848088E-4 3.5044526510740707E-4 0.0 0.025817613201583656 1.7744064056071243E-5 34-35 1.3308048042053432E-4 4.1698550531767424E-4 0.0 0.029002672699648444 1.7744064056071243E-5 36-37 1.3308048042053432E-4 4.7021769748588794E-4 0.0 0.03418393940402125 1.7744064056071243E-5 38-39 1.3308048042053432E-4 5.057058255980304E-4 0.0 0.04443113639640239 1.7744064056071243E-5 40-41 1.3308048042053432E-4 5.234498896541016E-4 0.0 0.06468154950039369 1.7744064056071243E-5 42-43 1.3308048042053432E-4 5.456299697241907E-4 0.0 0.07373102216899002 1.7744064056071243E-5 44-45 1.3751649643455212E-4 6.254782579765113E-4 0.0 0.0875181599405574 1.7744064056071243E-5 46-47 1.4195251244856995E-4 6.831464661587428E-4 0.0 0.10561266926173604 2.2180080070089056E-5 48-49 1.4638852846258777E-4 7.05326546228832E-4 0.0 0.11986115269876124 2.6616096084106865E-5 50-51 1.5969657650464117E-4 7.851748344811525E-4 0.0 0.137729425203225 2.6616096084106865E-5 52-53 1.5969657650464117E-4 7.896108504951703E-4 0.0 0.15806855862749664 3.99241441261603E-5 54-55 1.6413259251865897E-4 8.117909305652593E-4 0.0 0.22138381519557285 5.323219216821373E-5 56-57 1.685686085326768E-4 8.339710106353484E-4 0.0 0.27570726730323497 5.323219216821373E-5 58-59 1.685686085326768E-4 8.384070266493662E-4 0.0 0.3175433343314369 5.323219216821373E-5 60-61 1.7744064056071242E-4 8.517150746914197E-4 0.0 0.6130174889931352 5.323219216821373E-5 62-63 1.8631267258874804E-4 8.65023122733473E-4 0.0 0.6189440063878631 6.210422419624935E-5 64-65 1.8631267258874804E-4 9.626154750418649E-4 0.0 0.6250390923911235 6.210422419624935E-5 66-67 2.040567366448193E-4 9.892315711259717E-4 0.0 0.6302247951115103 6.210422419624935E-5 68-69 2.040567366448193E-4 0.0010114116511960609 0.0 0.6354415499439954 6.210422419624935E-5 70-71 2.1736478468687272E-4 0.0010202836832240965 0.0 0.6405607124241719 7.097625622428497E-5 72-73 2.3954486475696177E-4 0.0010202836832240965 0.0 0.6446817713011944 7.097625622428497E-5 74-75 2.3954486475696177E-4 0.0010468997793082035 0.0 0.6481418637921283 7.097625622428497E-5 76-77 2.5728892881303304E-4 0.0010912599394483813 0.0 0.6513934635304033 7.097625622428497E-5 78-79 2.6616096084106864E-4 0.0011178760355324883 0.0 0.6542946180035709 7.097625622428497E-5 80-81 2.6616096084106864E-4 0.001126748067560524 0.0 0.6555633185835801 7.541227223830277E-5 82-83 2.6616096084106864E-4 0.001126748067560524 0.0 0.6559980481529538 7.984828825232058E-5 84-85 2.7503299286910424E-4 0.001126748067560524 0.0 0.6563440574020472 7.984828825232058E-5 86-87 2.7503299286910424E-4 0.0011533641636446307 0.0 0.656525934058622 7.984828825232058E-5 88-89 2.7503299286910424E-4 0.0012332124518969513 0.0 0.6565658582027482 7.984828825232058E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15125 0.0 52.34436 1 GTATCAA 27465 0.0 36.65808 1 TCAACGC 34610 0.0 28.728191 4 ATCAACG 34760 0.0 28.567263 3 CAACGCA 35460 0.0 28.0274 5 TATCAAC 35900 0.0 27.842857 2 AACGCAG 36355 0.0 27.420061 6 ACGCAGA 41540 0.0 23.956411 7 CGCAGAG 42730 0.0 23.279257 8 GTGGTAT 7435 0.0 21.009779 1 GCAGAGT 49325 0.0 20.062973 9 TGGTATC 7300 0.0 20.053612 2 GTACATG 34085 0.0 19.984394 1 GAGTACT 29080 0.0 19.804031 12-13 TACATGG 34460 0.0 19.333433 2 AGAGTAC 44805 0.0 18.754103 10-11 ACATGGG 34700 0.0 18.655554 3 CAGAGTA 48125 0.0 18.280567 10-11 GTACTTT 32235 0.0 17.832853 14-15 AGTACTT 31715 0.0 17.337835 12-13 >>END_MODULE