##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139085_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9289039 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.573328629581596 34.0 31.0 34.0 31.0 34.0 2 32.70777375356052 34.0 31.0 34.0 31.0 34.0 3 32.69438765409425 34.0 31.0 34.0 31.0 34.0 4 36.224214797677135 37.0 35.0 37.0 35.0 37.0 5 36.182114748360945 37.0 35.0 37.0 35.0 37.0 6 36.22422943858886 37.0 37.0 37.0 35.0 37.0 7 36.183890820137584 37.0 37.0 37.0 35.0 37.0 8 36.15920710420098 37.0 37.0 37.0 35.0 37.0 9 37.89359319085645 39.0 38.0 39.0 35.0 39.0 10-11 37.82171551868821 39.0 38.0 39.0 35.0 39.0 12-13 37.794627086827816 39.0 38.0 39.0 35.0 39.0 14-15 39.145050634409 40.0 39.0 41.0 36.0 41.0 16-17 39.11147100362051 40.0 38.0 41.0 36.0 41.0 18-19 39.06624441990178 40.0 38.5 41.0 36.0 41.0 20-21 39.04797282783711 40.0 39.0 41.0 36.0 41.0 22-23 38.93355615976833 40.0 38.0 41.0 35.0 41.0 24-25 38.797394124684665 40.0 38.0 41.0 35.0 41.0 26-27 38.751875897596534 40.0 38.0 41.0 34.5 41.0 28-29 38.69825783779524 40.0 38.0 41.0 35.0 41.0 30-31 38.628795035805425 40.0 38.0 41.0 35.0 41.0 32-33 38.517249364100714 40.0 38.0 41.0 34.0 41.0 34-35 38.323338438896904 40.0 38.0 41.0 34.0 41.0 36-37 38.465735250500146 40.0 38.0 41.0 34.0 41.0 38-39 38.44860505835649 40.0 38.0 41.0 34.0 41.0 40-41 38.40961591221732 40.0 38.0 41.0 34.0 41.0 42-43 38.437833409611954 40.0 38.0 41.0 34.0 41.0 44-45 38.3719095534677 40.0 38.0 41.0 34.0 41.0 46-47 38.30873407545711 40.0 38.0 41.0 34.0 41.0 48-49 38.140593903938395 40.0 38.0 41.0 33.0 41.0 50-51 38.137623703624755 40.0 37.0 41.0 33.0 41.0 52-53 38.035408403893264 40.0 37.0 41.0 33.0 41.0 54-55 37.879237984249414 40.0 37.0 41.0 33.0 41.0 56-57 37.70669228658839 40.0 36.0 41.0 33.0 41.0 58-59 37.531851628932415 39.0 36.0 41.0 32.5 41.0 60-61 37.345786052845476 39.0 35.5 41.0 32.0 41.0 62-63 37.12342100190682 39.0 35.0 40.0 32.0 41.0 64-65 36.82567090100967 38.0 35.0 40.0 31.5 41.0 66-67 36.46342403514488 37.5 35.0 40.0 31.0 41.0 68-69 36.11599651929613 37.0 35.0 40.0 31.0 41.0 70-71 35.8112430467711 36.5 34.0 39.0 30.5 41.0 72-73 35.48146479404446 36.0 34.0 39.0 30.0 40.5 74-75 35.11530553318625 35.5 34.0 38.5 30.0 40.0 76-77 34.16010514128948 35.0 32.5 37.0 29.0 39.0 78-79 34.449014128201156 35.0 34.0 37.0 29.5 39.0 80-81 34.25744999975479 35.0 34.0 36.5 29.0 39.0 82-83 33.983739131405784 35.0 33.5 36.0 29.0 38.0 84-85 33.74516050398705 35.0 33.0 36.0 29.0 37.0 86-87 33.518867379208494 35.0 33.0 35.0 29.0 37.0 88-89 33.290349893878926 35.0 33.0 35.0 29.0 36.0 90-91 33.10773648570122 35.0 33.0 35.0 29.0 36.0 92-93 33.025390877202156 35.0 33.0 35.0 29.0 36.0 94-95 32.94862297197498 34.0 32.5 35.0 29.0 35.5 96-97 32.93471100104323 34.0 32.0 35.0 29.0 35.0 98-99 33.064390318030235 34.0 32.5 35.0 29.0 35.0 100-101 31.22083425665464 32.5 29.0 34.5 24.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 1.0 19 5.0 20 33.0 21 195.0 22 943.0 23 3470.0 24 9487.0 25 20607.0 26 37142.0 27 60487.0 28 89450.0 29 122742.0 30 160293.0 31 205585.0 32 262819.0 33 344539.0 34 479637.0 35 696209.0 36 1158710.0 37 2090228.0 38 2416956.0 39 1072763.0 40 56737.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.86193597227183 21.20859016832529 15.532803289210356 24.396670570192523 2 13.858070876272844 21.50222046888361 41.339245395889044 23.300463258954498 3 17.18040124284129 26.23633362249137 31.02640983921048 25.55685529545686 4 12.078393588132231 18.501834153745953 38.67086158127467 30.748910676847142 5 13.032910404715754 37.90338676620765 35.68186501120999 13.381837817866607 6 30.131893098079694 38.214743012139685 18.400764427920308 13.252599461860312 7 26.474054686825482 32.879863339992795 22.885394590914583 17.76068738226714 8 24.431633885916508 37.11519566232847 20.711571993615273 17.741598458139748 9 25.360632030934525 16.956393443928913 21.267883577623046 36.41509094751352 10-11 24.11912315236943 27.035004909826117 28.753936567404192 20.091935370400265 12-13 24.850311907160545 24.470517867296977 28.99295638639412 21.68621383914836 14-15 21.97300121616822 25.918808794606875 26.74069930587874 25.367490683346162 16-17 21.524577745569545 29.145620175908554 27.32833053096233 22.00147154755957 18-19 21.542556770404346 28.145629488690922 29.247062048076234 21.064751692828505 20-21 22.396652953897373 27.262460251136115 29.19589881887168 21.144987976094836 22-23 22.046938183796073 27.191665363031593 29.02367548433587 21.737720968836467 24-25 21.831419220909066 27.30347311131033 29.1779623521245 21.68714531565611 26-27 21.822696278963413 27.493940747934847 29.035526514597553 21.647836458504187 28-29 21.738266627014404 27.538783270558092 29.071760234492572 21.651189867934935 30-31 22.00604524198902 27.40094033370718 28.984587938437883 21.608426485865916 32-33 21.867642147437966 27.48837079224733 28.931218546289685 21.712768514025022 34-35 21.917748372455176 27.527833259262547 28.913690588447334 21.640727779834947 36-37 21.93355921197867 27.472815736055132 28.868937036826285 21.72468801513991 38-39 21.800604375637622 27.66373482622478 28.876597946723827 21.65906285141377 40-41 22.050699481212924 27.482673650830865 28.736124103360673 21.73050276459554 42-43 21.905676513253148 27.61924208204576 28.57242064891907 21.902660755782026 44-45 22.016345095606702 27.760473116384198 28.313496501663128 21.90968528634597 46-47 22.118330625410312 27.675622534257922 28.053489539078136 22.15255730125363 48-49 22.105854338190742 27.794585525595792 27.984988145412267 22.114571990801203 50-51 22.01902943951957 27.91496893138715 27.930547879912293 22.13545374918099 52-53 22.21875394431762 27.856221950318456 27.78899781048948 22.136026294874448 54-55 22.178920471636296 27.70891956952992 27.841601723226223 22.27055823560756 56-57 22.21011065671151 27.857414259135087 27.77464875648382 22.15782632766958 58-59 22.123271714632455 27.96497401329675 27.80982995575288 22.101924316317916 60-61 22.14932430168646 27.830798214175573 27.85205492815396 22.167822555984003 62-63 22.256445015257604 27.914323432611134 27.787322942109192 22.04190861002207 64-65 22.037156602730292 27.888305642420452 27.820898685182062 22.2536390696672 66-67 22.165117029442825 27.945048281134238 27.584426030403996 22.30540865901894 68-69 22.123141911646666 27.98889820314066 27.69956023157597 22.188399653636708 70-71 22.113544904621797 27.762722131407493 27.7636087504964 22.360124213474318 72-73 22.15195552653131 27.8138079577873 27.577154892008295 22.457081623673098 74-75 22.019062564679675 27.883017979503215 27.562892911736782 22.53502654408032 76-77 22.13050025470241 27.70839687586331 27.64385736026099 22.51724550917328 78-79 22.09035190669024 27.751612195934435 27.582890827011607 22.575145070363718 80-81 22.275129142446374 27.69852764588039 27.435428450420545 22.59091476125269 82-83 22.330645230527217 27.81346358447315 27.55290406900528 22.302987115994355 84-85 22.284623548746534 27.64357383268293 27.493560749719297 22.57824186885124 86-87 22.07002921599627 27.819723209541703 27.58894383507025 22.521303739391772 88-89 22.324007619247276 27.592406902982603 27.581135948903544 22.50244952886657 90-91 22.35402357335346 27.806632907117397 27.596885011423318 22.24245850810583 92-93 22.253649766317 27.680911622754934 27.631076922139147 22.434361688788922 94-95 22.237956623599526 27.535501967840194 27.720139449906796 22.50640195865349 96-97 22.09905472672946 27.74982693233695 27.85772837706475 22.293389963868837 98-99 22.289623937127885 28.194771980301013 27.96670898117427 21.54889510139683 100-101 20.8498994104001 31.83959005370926 25.680118492686 21.630392043204644 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1985.0 1 1711.5 2 2153.0 3 3018.0 4 4035.0 5 6144.0 6 8007.5 7 10003.0 8 11658.5 9 11984.0 10 11192.0 11 10428.0 12 11754.0 13 16264.5 14 27029.0 15 41552.5 16 53011.0 17 58776.0 18 59166.5 19 55936.0 20 50849.5 21 45337.0 22 42040.0 23 44048.5 24 51418.5 25 63488.0 26 79971.5 27 97861.0 28 116872.0 29 137498.5 30 156400.5 31 175666.5 32 197642.0 33 220960.0 34 242954.5 35 263317.0 36 285638.5 37 304646.5 38 317606.5 39 328058.5 40 341578.0 41 354887.0 42 361307.0 43 366628.0 44 372220.0 45 376996.5 46 378958.5 47 377479.0 48 375293.0 49 373027.0 50 368043.5 51 355777.5 52 336856.5 53 316710.0 54 297595.0 55 276266.0 56 253757.5 57 230211.0 58 205306.5 59 179251.0 60 151595.0 61 124771.0 62 99124.5 63 76231.0 64 57736.0 65 44408.5 66 34613.0 67 26003.0 68 18919.5 69 13950.5 70 9879.0 71 6641.5 72 4554.5 73 3042.5 74 2071.5 75 1356.0 76 846.0 77 524.5 78 342.0 79 222.5 80 155.0 81 105.0 82 77.0 83 51.5 84 31.5 85 22.0 86 15.5 87 12.5 88 10.0 89 8.0 90 6.0 91 3.5 92 2.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.0765376267663426E-5 2 0.01465167710028992 3 1.0765376267663426E-5 4 1.5071526774728796E-4 5 1.0765376267663426E-5 6 1.0765376267663426E-5 7 1.0765376267663426E-5 8 0.0 9 0.0 10-11 1.4533257961345624E-4 12-13 6.136264472568153E-4 14-15 3.014305354945759E-4 16-17 0.0019216196637779214 18-19 0.0 20-21 0.0 22-23 2.637768069236136E-4 24-25 0.009039859264628178 26-27 0.019280311220844927 28-29 0.3408861196512381 30-31 0.3170240103111269 32-33 0.3108591608196645 34-35 0.18192652623424604 36-37 0.043099351236765414 38-39 0.03504775447856408 40-41 0.014007125162898799 42-43 0.012625852556267622 44-45 0.01617401905968715 46-47 0.010734089582872829 48-49 0.006258144603233348 50-51 0.0030618964951930226 52-53 0.001020108999511097 54-55 3.4807950901760884E-5 56-57 1.344068348797424E-4 58-59 8.303332881262988E-4 60-61 7.16247276262553E-4 62-63 8.356073791293927E-5 64-65 3.0100445185584296E-5 66-67 0.0032763425999121896 68-69 0.005101262203281186 70-71 0.006931268782389964 72-73 0.01080047755015867 74-75 0.008062077618268782 76-77 0.006055003575837291 78-79 0.0037563943416308986 80-81 0.004647626065061934 82-83 0.0015519474794556825 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0024520724331050956 92-93 0.01481850625204897 94-95 0.0012359608222102883 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 151.0 20-21 499.0 22-23 1126.0 24-25 2458.0 26-27 3469.0 28-29 5996.0 30-31 16423.0 32-33 21896.0 34-35 31579.0 36-37 44735.0 38-39 51905.0 40-41 56019.0 42-43 68047.0 44-45 81260.0 46-47 80604.0 48-49 70411.0 50-51 62687.0 52-53 55753.0 54-55 61288.0 56-57 65287.0 58-59 42996.0 60-61 70199.0 62-63 70183.0 64-65 77434.0 66-67 81901.0 68-69 79863.0 70-71 79678.0 72-73 78174.0 74-75 79213.0 76-77 79864.0 78-79 85888.0 80-81 88871.0 82-83 87988.0 84-85 91215.0 86-87 98731.0 88-89 108576.0 90-91 119941.0 92-93 131092.0 94-95 158446.0 96-97 245444.0 98-99 940224.0 100-101 5611525.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.44001775453548 #Duplication Level Percentage of deduplicated Percentage of total 1 89.88221294767115 76.7953787006596 2 7.063662624737033 12.070389201391613 3 1.7404931676421491 4.461233014349786 4 0.608877463183192 2.0809000505883373 5 0.2756826903814861 1.1777166980406137 6 0.1546518970973746 0.7928076500263367 7 0.08300041621608763 0.4964089924595452 8 0.04779533331047463 0.3266907301304714 9 0.036345075040227666 0.2794791471054278 >10 0.10550894454184098 1.329822079312657 >50 0.0013752644753399273 0.07828696865545372 >100 3.154230221891744E-4 0.051675066988505505 >500 5.90647702841146E-5 0.03514034151550355 >1k 1.9687911217893407E-5 0.024071358776133454 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.229612880299028E-5 0.0 0.0 0.0 3 0.0 3.229612880299028E-5 0.0 0.0 0.0 4 0.0 6.459225760598055E-5 0.0 1.0765376267663426E-5 0.0 5 0.0 7.535763387364398E-5 0.0 1.0765376267663426E-5 0.0 6 4.30615050706537E-5 7.535763387364398E-5 0.0 1.0765376267663426E-5 0.0 7 4.30615050706537E-5 7.535763387364398E-5 0.0 1.0765376267663426E-5 0.0 8 4.30615050706537E-5 8.61230101413074E-5 0.0 1.0765376267663426E-5 0.0 9 4.30615050706537E-5 1.722460202826148E-4 0.0 1.0765376267663426E-5 0.0 10-11 5.382688133831713E-5 1.8301139655027822E-4 0.0 2.153075253532685E-5 0.0 12-13 5.382688133831713E-5 1.8301139655027822E-4 0.0 2.6913440669158564E-5 5.382688133831713E-6 14-15 6.997494573981227E-5 2.3145558975476365E-4 0.0 3.767881693682199E-5 1.0765376267663426E-5 16-17 1.0765376267663426E-4 2.476036541562588E-4 0.0 7.535763387364398E-5 1.0765376267663426E-5 18-19 1.0765376267663426E-4 2.745170948254173E-4 0.0 8.074032200747569E-5 2.153075253532685E-5 20-21 1.0765376267663426E-4 3.014305354945759E-4 0.0 1.0765376267663426E-4 3.229612880299028E-5 22-23 1.0765376267663426E-4 3.2834397616373446E-4 0.0 3.014305354945759E-4 3.229612880299028E-5 24-25 1.3994989147962455E-4 3.8755354563588327E-4 0.0 8.558474132792423E-4 3.229612880299028E-5 26-27 1.5071526774728796E-4 4.0908429817121015E-4 0.0 0.0025029499822317464 3.229612880299028E-5 28-29 1.6148064401495137E-4 4.1446698630504187E-4 0.0 0.015066144086594964 3.229612880299028E-5 30-31 1.6148064401495137E-4 4.68293867643359E-4 0.0 0.021385419955713393 3.229612880299028E-5 32-33 1.6148064401495137E-4 4.7367655577719073E-4 0.0 0.023716123917662528 3.229612880299028E-5 34-35 1.7762870841644653E-4 5.275034371155079E-4 0.0 0.02667660239126997 3.229612880299028E-5 36-37 1.8301139655027822E-4 5.81330318453825E-4 0.0 0.031951636762425045 3.229612880299028E-5 38-39 1.8301139655027822E-4 5.81330318453825E-4 0.0 0.041855782928675395 4.30615050706537E-5 40-41 1.8301139655027822E-4 6.782187048627958E-4 0.0 0.061992419237339835 4.30615050706537E-5 42-43 1.8839408468410994E-4 7.051321455319544E-4 0.0 0.07013642638382722 4.30615050706537E-5 44-45 1.9915946095177336E-4 8.558474132792423E-4 0.0 0.08261888016618296 4.30615050706537E-5 46-47 2.0454214908560508E-4 9.581184878220449E-4 0.0 0.09915988080144782 4.30615050706537E-5 48-49 2.0454214908560508E-4 9.635011759558767E-4 0.0 0.11286958747831718 4.30615050706537E-5 50-51 2.099248372194368E-4 0.001065772250498679 0.0 0.1303202624081996 5.382688133831713E-5 52-53 2.3683827788859537E-4 0.0010765376267663426 0.0 0.1497894453882689 5.382688133831713E-5 54-55 2.3683827788859537E-4 0.0010765376267663426 0.0 0.21172265505613658 5.382688133831713E-5 56-57 2.3683827788859537E-4 0.001087303003034006 0.0 0.2637947800628246 5.382688133831713E-5 58-59 2.3683827788859537E-4 0.001087303003034006 0.0 0.3058228090117826 5.382688133831713E-5 60-61 2.3683827788859537E-4 0.0011142164437031644 0.0 0.590572393979614 5.382688133831713E-5 62-63 2.476036541562588E-4 0.0011303645081046597 0.0 0.5961811550150666 5.382688133831713E-5 64-65 2.476036541562588E-4 0.001216487518245967 0.0 0.6020644331453447 5.382688133831713E-5 66-67 2.476036541562588E-4 0.001216487518245967 0.0 0.607172604184351 5.382688133831713E-5 68-69 2.583690304239222E-4 0.0012541663351827892 0.0 0.6121785041488146 5.382688133831713E-5 70-71 2.583690304239222E-4 0.0012756970877181159 0.0 0.616926035082854 5.382688133831713E-5 72-73 2.7989978295924904E-4 0.0012864624639857794 0.0 0.6209415204306925 5.382688133831713E-5 74-75 2.7989978295924904E-4 0.0013295239690564332 0.0 0.6242949351380698 5.382688133831713E-5 76-77 2.906651592269125E-4 0.0014156469791977405 0.0 0.6270185753337886 5.382688133831713E-5 78-79 3.014305354945759E-4 0.0014425604198668991 0.0 0.6296022656380278 5.382688133831713E-5 80-81 3.0681322362840764E-4 0.0014425604198668991 0.0 0.6308564319732106 5.920956947214884E-5 82-83 3.175785998960711E-4 0.0014533257961345625 0.0 0.6313785527221922 6.459225760598055E-5 84-85 3.2296128802990274E-4 0.0014748565486698891 0.0 0.6317230447627575 6.459225760598055E-5 86-87 3.2296128802990274E-4 0.0015071526774728795 0.0 0.6318468465898356 6.459225760598055E-5 88-89 3.2296128802990274E-4 0.0015609795588111966 0.0 0.6319706484169137 6.997494573981227E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11885 0.0 51.23892 1 GTATCAA 21675 0.0 37.54015 1 TCAACGC 26825 0.0 29.83303 4 ATCAACG 26940 0.0 29.6579 3 CAACGCA 27660 0.0 28.947948 5 TATCAAC 27835 0.0 28.90858 2 AACGCAG 28420 0.0 28.144238 6 ACGCAGA 32920 0.0 24.257957 7 CGCAGAG 33475 0.0 23.791677 8 GTGGTAT 6020 0.0 23.31138 1 TGGTATC 5890 0.0 22.004343 2 GTACATG 27245 0.0 20.587591 1 GCAGAGT 38610 0.0 20.494316 9 TACATGG 27000 0.0 20.265774 2 GAGACCG 7420 0.0 19.902773 88-89 GACCGAG 7580 0.0 19.741268 90-91 ACATGGG 27075 0.0 19.62052 3 GAGTACT 23250 0.0 19.61035 12-13 AGACCGA 7520 0.0 19.308895 90-91 CGAGACC 7475 0.0 19.254705 88-89 >>END_MODULE