##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139084_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12646922 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.60667915877081 34.0 31.0 34.0 31.0 34.0 2 32.73907153060642 34.0 31.0 34.0 31.0 34.0 3 32.72551044435951 34.0 31.0 34.0 31.0 34.0 4 36.23730572545636 37.0 37.0 37.0 35.0 37.0 5 36.19411576982921 37.0 37.0 37.0 35.0 37.0 6 36.23574574113765 37.0 37.0 37.0 35.0 37.0 7 36.193914535093995 37.0 37.0 37.0 35.0 37.0 8 36.17018805049956 37.0 37.0 37.0 35.0 37.0 9 37.9087740084109 39.0 38.0 39.0 35.0 39.0 10-11 37.8393031126467 39.0 38.0 39.0 35.0 39.0 12-13 37.81458120798088 39.0 38.0 39.0 35.0 39.0 14-15 39.17814615287419 41.0 39.0 41.0 36.0 41.0 16-17 39.14921140495687 40.0 39.0 41.0 36.0 41.0 18-19 39.10598464195478 40.0 38.5 41.0 36.0 41.0 20-21 39.08954989748209 40.0 39.0 41.0 36.0 41.0 22-23 38.98147932994336 40.0 38.5 41.0 35.0 41.0 24-25 38.85263248554678 40.0 38.0 41.0 35.0 41.0 26-27 38.805679475941446 40.0 38.0 41.0 35.0 41.0 28-29 38.74262489460086 40.0 38.0 41.0 35.0 41.0 30-31 38.67650633888702 40.0 38.0 41.0 35.0 41.0 32-33 38.56770852711186 40.0 38.0 41.0 34.5 41.0 34-35 38.37809165234604 40.0 38.0 41.0 34.0 41.0 36-37 38.525501880537234 40.0 38.0 41.0 34.0 41.0 38-39 38.5118011884216 40.0 38.0 41.0 34.5 41.0 40-41 38.480617344120546 40.0 38.0 41.0 34.0 41.0 42-43 38.5154576418824 40.0 38.0 41.0 34.0 41.0 44-45 38.45340721595302 40.0 38.0 41.0 34.0 41.0 46-47 38.39662218407629 40.0 38.0 41.0 34.0 41.0 48-49 38.22980467385565 40.0 38.0 41.0 33.0 41.0 50-51 38.22530346727362 40.0 37.5 41.0 33.0 41.0 52-53 38.1288532418669 40.0 37.0 41.0 33.0 41.0 54-55 37.98635579495294 40.0 37.0 41.0 33.0 41.0 56-57 37.81721211351068 40.0 36.5 41.0 33.0 41.0 58-59 37.651834241458474 39.0 36.0 41.0 33.0 41.0 60-61 37.4718486630982 39.0 36.0 41.0 32.5 41.0 62-63 37.26398496170249 39.0 35.0 41.0 32.0 41.0 64-65 36.98591782322708 38.5 35.0 40.0 32.0 41.0 66-67 36.63774025206382 38.0 35.0 40.0 31.0 41.0 68-69 36.300630262123434 37.0 35.0 40.0 31.0 41.0 70-71 36.00169137684492 37.0 35.0 39.5 31.0 41.0 72-73 35.68183524481781 36.0 34.0 39.0 31.0 41.0 74-75 35.3115711581771 36.0 34.0 39.0 30.0 40.0 76-77 34.35170957596635 35.0 33.0 37.0 29.0 39.0 78-79 34.59871225806087 35.0 34.0 37.0 30.0 39.0 80-81 34.38543268679174 35.0 34.0 37.0 30.0 39.0 82-83 34.11091147393399 35.0 34.0 36.0 30.0 38.0 84-85 33.87975230602595 35.0 33.5 36.0 30.0 37.0 86-87 33.66015930303908 35.0 33.0 35.0 29.0 37.0 88-89 33.436067442043324 35.0 33.0 35.0 29.0 36.0 90-91 33.273421618269126 35.0 33.0 35.0 29.0 36.0 92-93 33.19755439671131 35.0 33.0 35.0 29.0 36.0 94-95 33.12192847370531 35.0 33.0 35.0 29.0 35.5 96-97 33.08802647955024 34.5 33.0 35.0 29.0 35.0 98-99 33.189733114656704 34.0 33.0 35.0 29.0 35.0 100-101 31.336821101488447 32.5 29.0 34.5 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 2.0 19 11.0 20 66.0 21 354.0 22 1611.0 23 5371.0 24 14185.0 25 29762.0 26 53054.0 27 84521.0 28 121175.0 29 162798.0 30 209883.0 31 264432.0 32 335108.0 33 437479.0 34 607710.0 35 886298.0 36 1495810.0 37 2786318.0 38 3458209.0 39 1589505.0 40 103259.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.02111826269809 21.309803390089968 15.321523713163069 24.347554634048873 2 13.86838927969008 21.528505622974023 41.399486793842314 23.20361830349358 3 16.981405988066186 26.56156387787984 31.2132020117782 25.24382812227577 4 12.100498232413944 18.58768810624003 38.85131141530314 30.460502246042886 5 12.990047142699792 37.98220135952458 35.83939521722323 13.188356280552396 6 29.864225450605726 38.29050564955692 18.60429111560039 13.240977784236971 7 26.249495825901025 33.00178754971269 23.207996634121457 17.540719990264826 8 24.384288920260598 36.8757156879753 21.05993062976114 17.68006476200296 9 25.44491062726567 16.84165522646538 21.496613958716594 36.21682018755236 10-11 23.993767804254432 26.979442483446743 29.000810237633594 20.025979474665228 12-13 24.797024362927715 24.49436372949507 29.111826213002807 21.596785694574407 14-15 21.98304271321649 25.924575865211487 26.76354078572734 25.328840635844685 16-17 21.58821817036855 29.140416889172105 27.37554465318981 21.895820287269533 18-19 21.59756513067489 28.185366224711927 29.197023528493617 21.02004511611957 20-21 22.429531425647085 27.261741876227585 29.098659107709405 21.210067590415925 22-23 22.077274916314966 27.268479308662357 28.88347595177148 21.770769823251193 24-25 21.876067594201608 27.436337471732852 28.98732171695923 21.700273217106314 26-27 21.907700060251557 27.55557521560862 28.883867222472897 21.65285750166693 28-29 21.84178183877861 27.54895418752717 28.939967263926196 21.669296709768027 30-31 22.0341717015172 27.361560772991478 28.85247303953261 21.751794485958712 32-33 21.789431091843667 27.581711188238785 28.764416970515732 21.864440749401812 34-35 22.00568954674991 27.626069523801277 28.745816160536513 21.6224247689123 36-37 22.003701690637286 27.52321843477647 28.731101875677783 21.74197799890846 38-39 21.88813287872037 27.69727558042675 28.714939202248736 21.699652338604146 40-41 22.044899192887602 27.46529400506514 28.661930085866206 21.827876716181052 42-43 22.065416381488756 27.567259524194842 28.429547842016806 21.9377762522996 44-45 21.96469817608957 27.73662556518395 28.24623459208552 22.05244166664096 46-47 22.12554705128127 27.576536079782837 28.03643658679468 22.261480282141218 48-49 22.118429339861915 27.813854025948643 27.894022534179737 22.173694100009712 50-51 21.983720611593483 27.86173599446528 27.939872491656477 22.214670902284762 52-53 22.131879768949492 27.808212414602103 27.70346843911514 22.356439377333263 54-55 22.10167688073582 27.496474526213838 27.881181728582 22.52066686446834 56-57 22.230391773836526 27.364532253176282 27.922663494717277 22.482412478269918 58-59 21.87482758765219 27.35599842712893 28.254219178745405 22.514954806473476 60-61 22.038614406315276 27.18545761191053 28.371074314567224 22.40485366720697 62-63 21.833620531565156 27.636040486390435 28.29628073774888 22.234058244295525 64-65 21.37479532274372 27.911601846071495 28.198920719398956 22.514682111785834 66-67 21.58642914570861 28.288595494543706 27.690717767781404 22.43425759196628 68-69 21.62198262121778 28.475034808840928 27.40611742744109 22.496865142500205 70-71 21.583915488189017 28.12020812041758 27.35309028317104 22.942786108222364 72-73 21.55601861403388 27.744240423629734 27.337890562318044 23.361850400018337 74-75 21.907513317283218 27.428181433927595 27.361262952126857 23.303042296662323 76-77 22.28857084944408 27.294667163038568 27.230604047644576 23.18615793987278 78-79 22.426947335808443 27.209216113685642 26.659119871641206 23.704716678864713 80-81 22.45323754216362 27.597663052291878 26.504468245479103 23.444631160065402 82-83 22.299807903142327 27.669824756468536 26.708756246726228 23.321611093662906 84-85 22.43858545805011 27.645602898768452 26.598455495433893 23.317356147747546 86-87 22.567313438925865 28.000482438981066 26.598444154287666 22.8337599678054 88-89 22.785724183121317 27.599807736523918 26.900380821769016 22.714087258585746 90-91 22.486214036561044 27.612828245208053 27.136754693933558 22.76420302429734 92-93 22.37476859954507 27.200978416837035 27.05591302924108 23.368339954376815 94-95 22.143809535796528 27.175051811591388 27.708199045418798 22.97293960719329 96-97 21.726829301493275 27.40247020483241 27.984563717204786 22.886136776469527 98-99 21.908247978989806 27.542427278249193 28.280624824865576 22.268699917895425 100-101 20.76710712129045 31.260357416172486 26.05929512024537 21.913240342291694 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2484.0 1 2225.0 2 2995.5 3 4227.5 4 5715.0 5 8810.0 6 11407.5 7 13822.5 8 15708.5 9 15989.5 10 15119.0 11 14290.0 12 16046.5 13 21768.0 14 35049.0 15 53561.5 16 68849.5 17 77124.0 18 78293.5 19 74237.0 20 67626.5 21 60942.0 22 57632.0 23 60650.5 24 69687.5 25 85388.5 26 107243.5 27 131379.5 28 157823.0 29 186421.0 30 213620.0 31 240518.0 32 268235.0 33 296441.5 34 325229.0 35 352129.0 36 382259.5 37 409280.0 38 428626.0 39 446324.0 40 464577.0 41 481074.5 42 489431.0 43 496194.0 44 503828.0 45 512934.5 46 518739.0 47 521126.0 48 527470.0 49 524113.0 50 507731.0 51 488912.5 52 464241.5 53 435913.0 54 409117.5 55 379604.0 56 348112.5 57 313811.0 58 276640.5 59 239117.0 60 201173.0 61 166403.5 62 133420.5 63 103986.5 64 81042.5 65 65413.0 66 54592.5 67 40513.0 68 28044.5 69 21722.5 70 15730.0 71 9735.0 72 6386.0 73 4288.0 74 2767.0 75 1792.5 76 1173.0 77 709.5 78 443.5 79 301.0 80 196.5 81 135.5 82 110.5 83 76.5 84 49.5 85 34.5 86 25.0 87 18.0 88 13.0 89 10.0 90 8.5 91 8.0 92 6.0 93 2.5 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 7.907062287566888E-6 2 0.01661273786617803 3 7.907062287566888E-6 4 1.0279180973836954E-4 5 7.907062287566888E-6 6 7.907062287566888E-6 7 7.907062287566888E-6 8 0.0 9 0.0 10-11 1.1860593431350331E-4 12-13 6.641932321556186E-4 14-15 2.2535127519565632E-4 16-17 0.001798856670421467 18-19 7.907062287566888E-6 20-21 3.953649938457485E-6 22-23 2.4118945783812556E-4 24-25 0.009356578987955085 26-27 0.02009959445972737 28-29 0.34959773860097104 30-31 0.32526691510979644 32-33 0.3188972364714779 34-35 0.187222435270731 36-37 0.04642871433716138 38-39 0.03773502564033194 40-41 0.016004540175724672 42-43 0.014664723977940474 44-45 0.017942816412705013 46-47 0.012669432369136915 48-49 0.007730176815106753 50-51 0.004072218576395518 52-53 0.0015407669921061655 54-55 9.804814701151594E-5 56-57 2.7326648495014724E-4 58-59 0.001261668239332563 60-61 0.0011075271969830272 62-63 2.68726149199792E-4 64-65 7.88230147438449E-5 66-67 0.0033930414124690995 68-69 0.005656228758328707 70-71 0.0073305198100157756 72-73 0.01152011782517962 74-75 0.008488107239238252 76-77 0.006494996484495225 78-79 0.0038488691917906233 80-81 0.004782216192411003 82-83 0.0016942132927877582 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0026616904746970213 92-93 0.01556167732200544 94-95 0.001392513366119882 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 237.0 20-21 728.0 22-23 1505.0 24-25 3804.0 26-27 5296.0 28-29 9302.0 30-31 27004.0 32-33 35443.0 34-35 51263.0 36-37 71281.0 38-39 60993.0 40-41 88288.0 42-43 103842.0 44-45 121085.0 46-47 118175.0 48-49 100174.0 50-51 96456.0 52-53 18463.0 54-55 18534.0 56-57 19131.0 58-59 20745.0 60-61 111106.0 62-63 115710.0 64-65 126080.0 66-67 134423.0 68-69 127342.0 70-71 123418.0 72-73 121065.0 74-75 123148.0 76-77 124689.0 78-79 131345.0 80-81 133662.0 82-83 131972.0 84-85 136468.0 86-87 145389.0 88-89 155591.0 90-91 167132.0 92-93 179971.0 94-95 211997.0 96-97 319052.0 98-99 1290892.0 100-101 7564721.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.21830682617411 #Duplication Level Percentage of deduplicated Percentage of total 1 88.07419072914297 72.41310836835657 2 7.921260261175565 13.025452132066254 3 2.135942575714501 5.268407461595504 4 0.8341950004361113 2.743444019948665 5 0.4045603740788382 1.6631134482862848 6 0.20902932462042645 1.0311622288386104 7 0.1298717694093384 0.7474485889748581 8 0.08114587225141269 0.5337340977955342 9 0.048089172222719474 0.35584292851418514 >10 0.1580659219204769 1.9409921110678037 >50 0.00299198713806021 0.15927871175086722 >100 6.062433397950814E-4 0.08099171776642147 >500 3.38460145280924E-5 0.020954182706401113 >1k 1.6922535223137374E-5 0.016070002332068078 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.3721186862700662E-5 0.0 1.5814124575133776E-5 7.907062287566888E-6 3 0.0 2.3721186862700662E-5 0.0 1.5814124575133776E-5 7.907062287566888E-6 4 0.0 4.7442373725401324E-5 0.0 1.5814124575133776E-5 7.907062287566888E-6 5 0.0 4.7442373725401324E-5 0.0 1.5814124575133776E-5 7.907062287566888E-6 6 0.0 4.7442373725401324E-5 0.0 2.3721186862700662E-5 1.5814124575133776E-5 7 0.0 4.7442373725401324E-5 0.0 2.3721186862700662E-5 1.5814124575133776E-5 8 0.0 5.534943601296822E-5 0.0 2.3721186862700662E-5 1.5814124575133776E-5 9 0.0 9.488474745080265E-5 0.0 2.3721186862700662E-5 1.5814124575133776E-5 10-11 0.0 9.488474745080265E-5 0.0 3.162824915026755E-5 1.5814124575133776E-5 12-13 0.0 9.883827859458609E-5 0.0 3.162824915026755E-5 1.5814124575133776E-5 14-15 0.0 1.5023418346377088E-4 0.0 3.162824915026755E-5 2.767471800648411E-5 16-17 0.0 1.5814124575133775E-4 0.0 5.139590486918477E-5 3.5581780294050995E-5 18-19 0.0 1.7395537032647153E-4 0.0 7.907062287566888E-5 3.953531143783444E-5 20-21 0.0 1.897694949016053E-4 0.0 1.2255946545728676E-4 4.348884258161788E-5 22-23 0.0 2.411653997707901E-4 0.0 3.3605014722159273E-4 6.32564983005351E-5 24-25 0.0 2.965148357837583E-4 0.0 0.0012493158414355683 7.907062287566888E-5 26-27 0.0 3.162824915026755E-4 0.0 0.003554224498261316 8.697768516323576E-5 28-29 0.0 3.162824915026755E-4 0.0 0.020419988357641486 8.697768516323576E-5 30-31 0.0 3.7163192751564375E-4 0.0 0.02944589995889909 8.697768516323576E-5 32-33 0.0 3.874460520907775E-4 0.0 0.03429688267232138 1.0279180973836954E-4 34-35 0.0 4.4674901924752916E-4 0.0 0.039875315116199815 1.1860593431350332E-4 36-37 0.0 5.060519864042808E-4 0.0 0.04942704635958062 1.2255946545728676E-4 38-39 0.0 5.139590486918477E-4 0.0 0.07180403263339491 1.265129966010702E-4 40-41 0.0 5.574478912734656E-4 0.0 0.28258259203306546 1.3837359003242053E-4 42-43 0.0 6.048902649988669E-4 0.0 0.3048053905922722 1.4232712117620398E-4 44-45 0.0 6.879144190183193E-4 0.0 0.34352627461448726 1.5023418346377088E-4 46-47 0.0 7.511709173188543E-4 0.0 0.405857646627377 1.5023418346377088E-4 48-49 0.0 7.788456353253385E-4 0.0 0.45226024166196327 1.7395537032647153E-4 50-51 0.0 8.737303827761412E-4 0.0 0.5467298683426687 1.7395537032647153E-4 52-53 0.0 8.776839139199245E-4 0.0 0.7324430402907521 1.8581596375782185E-4 54-55 0.0 8.81637445063708E-4 0.0 1.392338784093078 1.976765571891722E-4 56-57 0.0 8.934980384950583E-4 0.0 2.1175152341415564 1.976765571891722E-4 58-59 0.0 9.053586319264086E-4 0.0 2.8603481542781712 1.976765571891722E-4 60-61 0.0 9.409404122204596E-4 0.0 3.411699700527923 1.976765571891722E-4 62-63 0.0 9.567545367955934E-4 0.0 3.42215679040323 2.2139774405187287E-4 64-65 0.0 0.001051639284246396 0.0 3.4288145368493614 2.253512751956563E-4 66-67 0.0 0.001051639284246396 0.0 3.4346064599750044 2.411653997707901E-4 68-69 0.0 0.0010714069399653133 0.0 3.4401690782943075 2.49072462058357E-4 70-71 0.0 0.0010793140022528802 0.0 3.4450991316306054 2.530259932021404E-4 72-73 0.0 0.001087221064540447 0.0 3.4493096422987346 2.8465424235240796E-4 74-75 0.0 0.0011386169694096318 0.0 3.4527927032364083 2.8465424235240796E-4 76-77 0.0 0.0012058269988539504 0.0 3.456394370108395 2.8465424235240796E-4 78-79 0.0 0.0012255946545728677 0.0 3.4598813845772116 2.8465424235240796E-4 80-81 0.0 0.001229548185716651 0.0 3.4613402375692677 2.965148357837583E-4 82-83 0.0 0.0012414087791480014 0.0 3.461905592522829 3.083754292151086E-4 84-85 0.0 0.0012690834971544854 0.0 3.4622732709192006 3.162824915026755E-4 86-87 0.0 0.001280944090585836 0.0 3.4624551333518148 3.162824915026755E-4 88-89 0.0 0.001344200588886371 0.0 3.4625262969124027 3.162824915026755E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15650 0.0 50.20081 1 GTATCAA 28675 0.0 37.67249 1 TCAACGC 35190 0.0 30.107222 4 ATCAACG 35220 0.0 30.008533 3 CAACGCA 35875 0.0 29.556255 5 TATCAAC 37025 0.0 28.81741 2 AACGCAG 36975 0.0 28.746878 6 TATCTCG 16700 0.0 26.841125 94-95 ACGCAGA 42330 0.0 25.089968 7 CGCAGAG 43750 0.0 24.226616 8 CTATCTC 26405 0.0 20.99086 94-95 GCAGAGT 50475 0.0 20.845898 9 GTACATG 36890 0.0 20.250656 1 TCGTATC 1345 0.0 19.913166 94-95 GTGGTAT 8420 0.0 19.863333 1 TACATGG 36965 0.0 19.815123 2 TGGTATC 7895 0.0 19.55465 2 ACATGGG 37220 0.0 19.122686 3 GAGTACT 29695 0.0 19.117357 12-13 AGAGTAC 45830 0.0 18.949955 10-11 >>END_MODULE