##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139083_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7591603 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.61934719189083 34.0 31.0 34.0 31.0 34.0 2 32.75356811993462 34.0 31.0 34.0 31.0 34.0 3 32.74126571160267 34.0 31.0 34.0 31.0 34.0 4 36.24577879006581 37.0 37.0 37.0 35.0 37.0 5 36.203915826473015 37.0 37.0 37.0 35.0 37.0 6 36.244652545714 37.0 37.0 37.0 35.0 37.0 7 36.205460954689016 37.0 37.0 37.0 35.0 37.0 8 36.18431574991474 37.0 37.0 37.0 35.0 37.0 9 37.927592630963446 39.0 38.0 39.0 35.0 39.0 10-11 37.86019158272634 39.0 38.0 39.0 35.0 39.0 12-13 37.8321727967071 39.0 38.0 39.0 35.0 39.0 14-15 39.20295476462613 41.0 39.0 41.0 36.0 41.0 16-17 39.17408233807801 40.0 39.0 41.0 36.0 41.0 18-19 39.12844691694231 40.0 39.0 41.0 36.0 41.0 20-21 39.11153088965464 40.0 39.0 41.0 36.0 41.0 22-23 39.000065701773266 40.0 38.5 41.0 35.0 41.0 24-25 38.87017762811443 40.0 38.0 41.0 35.0 41.0 26-27 38.821602469824015 40.0 38.0 41.0 35.0 41.0 28-29 38.76019273379143 40.0 38.0 41.0 35.0 41.0 30-31 38.69877892604573 40.0 38.0 41.0 35.0 41.0 32-33 38.59328595558496 40.0 38.0 41.0 35.0 41.0 34-35 38.40762194485053 40.0 38.0 41.0 34.0 41.0 36-37 38.550733378608555 40.0 38.0 41.0 34.0 41.0 38-39 38.540022225264025 40.0 38.0 41.0 34.5 41.0 40-41 38.50530535059494 40.0 38.0 41.0 34.0 41.0 42-43 38.53763344056273 40.0 38.0 41.0 34.0 41.0 44-45 38.47475103193188 40.0 38.0 41.0 34.0 41.0 46-47 38.41608693202001 40.0 38.0 41.0 34.0 41.0 48-49 38.25415464245033 40.0 38.0 41.0 33.0 41.0 50-51 38.24991986688977 40.0 38.0 41.0 33.0 41.0 52-53 38.154520949120545 40.0 37.0 41.0 33.0 41.0 54-55 38.008389490738224 40.0 37.0 41.0 33.0 41.0 56-57 37.83976958737689 40.0 37.0 41.0 33.0 41.0 58-59 37.676405428021795 39.5 36.0 41.0 33.0 41.0 60-61 37.49578372995799 39.0 36.0 41.0 33.0 41.0 62-63 37.28342468013659 39.0 35.0 41.0 32.0 41.0 64-65 36.998996039977804 38.5 35.0 40.0 32.0 41.0 66-67 36.64730150888399 38.0 35.0 40.0 31.0 41.0 68-69 36.31147799080743 37.0 35.0 40.0 31.0 41.0 70-71 36.00618102571957 37.0 35.0 39.5 31.0 41.0 72-73 35.6822947527542 36.0 34.0 39.0 31.0 41.0 74-75 35.308308673672485 36.0 34.0 39.0 30.0 40.0 76-77 34.34434195266644 35.0 33.0 37.0 29.0 39.0 78-79 34.59641059600399 35.0 34.0 37.0 30.0 39.0 80-81 34.38063707689912 35.0 34.0 37.0 30.0 39.0 82-83 34.1053387746811 35.0 34.0 36.0 30.0 38.5 84-85 33.87328179719056 35.0 33.5 36.0 29.0 37.0 86-87 33.64968937497028 35.0 33.0 35.0 29.0 37.0 88-89 33.42243747297833 35.0 33.0 35.0 29.0 36.5 90-91 33.253790797569195 35.0 33.0 35.0 29.0 36.0 92-93 33.17716302765155 35.0 33.0 35.0 29.0 36.0 94-95 33.10033728050662 35.0 33.0 35.0 29.0 35.5 96-97 33.06620943492371 34.0 33.0 35.0 29.0 35.0 98-99 33.173117280096314 34.0 33.0 35.0 29.0 35.0 100-101 31.2981796712085 32.5 29.0 34.5 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 0.0 14 0.0 15 0.0 16 1.0 17 0.0 18 1.0 19 6.0 20 32.0 21 191.0 22 968.0 23 3345.0 24 8659.0 25 18045.0 26 32192.0 27 50293.0 28 71872.0 29 97464.0 30 125059.0 31 158384.0 32 199579.0 33 261164.0 34 365627.0 35 532220.0 36 897257.0 37 1689918.0 38 2098224.0 39 924169.0 40 56932.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.14418052265919 21.080296501357225 15.315280663459527 24.460242312524063 2 13.774788491781752 21.45423271364876 41.365562429326545 23.405416365242946 3 17.133434699742516 26.332232160251834 31.093046117676625 25.441287022329018 4 12.189200442753158 18.466476517630234 38.61041476296991 30.733908276646694 5 13.103797209574106 37.87554166769302 35.716366020816956 13.304295101915919 6 30.09441222024021 38.030602763422 18.561997849729213 13.312987166608576 7 26.312390981508248 32.87294302309315 23.11373804896516 17.70092794643344 8 24.42062631568063 36.970900612163206 20.97510894602892 17.633364126127248 9 25.44122763005389 16.835034708743333 21.298215936739577 36.4255217244632 10-11 24.074402044103394 26.87600131329494 28.95221918194371 20.09737746065796 12-13 24.830856536243513 24.401978855856804 29.13962264797143 21.627541959928255 14-15 21.95112071853812 25.870620748867772 26.70744254111512 25.47081599147898 16-17 21.581810067451986 29.04011131435081 27.3868421336884 21.991236484508807 18-19 21.65136928261396 28.1835865231625 29.12846601699272 21.036578177230815 20-21 22.35403405732583 27.27010527866025 29.062204393221414 21.313656270792507 22-23 22.098738889134804 27.21569148207401 28.909169665045752 21.776399963745437 24-25 21.898732467446898 27.382425854699093 28.940902838976417 21.777938838877585 26-27 21.880748465065484 27.524736733236416 28.90044622557918 21.694068576118923 28-29 21.79906711960192 27.545909717192053 28.903630303943423 21.751392859262605 30-31 22.03603013559561 27.33732814627942 28.87672954683696 21.749912171288006 32-33 21.819697523818775 27.541061587221193 28.796840961533395 21.842399927426634 34-35 21.978715650187226 27.545433680707898 28.78969163807845 21.686159031026424 36-37 21.902314172976432 27.54076463687747 28.79747653833849 21.759444651807613 38-39 21.896245025248568 27.6097079213873 28.717781820146122 21.77626523321801 40-41 22.03849281648143 27.39494317396608 28.66225625442468 21.904307755127814 42-43 22.00350309085886 27.561443714810828 28.471661727383562 21.963391466946746 44-45 21.967169374485454 27.6337348462181 28.311121250348386 22.087974528948063 46-47 22.065693438209053 27.596044777843804 28.061246555079585 22.277015228867562 48-49 22.03742195060296 27.806576695260187 28.002486667431338 22.153514686705517 50-51 21.98550022024085 27.883354609373516 27.9304604145381 22.200684755847533 52-53 22.09875388181612 27.78837058903133 27.734296451300043 22.378579077852507 54-55 22.059069707263173 27.551057109724216 27.874694214167068 22.515178968845547 56-57 22.120205001084287 27.391249942671493 28.037448397264765 22.451096658979456 58-59 21.908665733781092 27.33732107769622 28.22684701383158 22.527166174691107 60-61 21.994033696086433 27.183319503869402 28.394749242794166 22.427897557249995 62-63 21.790358782777503 27.665727419432518 28.31459683798807 22.229316959801906 64-65 21.45201684625201 27.84513818221973 28.17299724687654 22.529847724651713 66-67 21.543641814092577 28.21454195511238 27.811370891456345 22.430445339338696 68-69 21.611736713416477 28.429157835787922 27.495555632204567 22.463549818591037 70-71 21.586589900370228 28.090041787996327 27.449498971177334 22.87386934045611 72-73 21.54046302677993 27.797503225017394 27.39570075285429 23.266332995348385 74-75 21.853746348333207 27.484113000999287 27.464368584640038 23.19777206602747 76-77 22.22423561969672 27.344823544798746 27.322201775986425 23.108739059518104 78-79 22.364417990708837 27.228768645661294 26.843061626074594 23.56375173755528 80-81 22.31929028940368 27.614207326741635 26.726381738615252 23.34012064523943 82-83 22.224917926079694 27.701990205105837 26.84459111774464 23.22850075106983 84-85 22.34322152889462 27.670560384329594 26.780155696358182 23.2060623904176 86-87 22.469585809026213 27.955371061371597 26.79204245410942 22.78300067549277 88-89 22.61645209582208 27.61849360113469 27.058824214373946 22.706230088669283 90-91 22.382310643329266 27.64478039870412 27.247253669368675 22.725655288597935 92-93 22.292112232667918 27.20932212790422 27.258839724437113 23.239725914990757 94-95 22.07124289831138 27.197351161122313 27.82103241059735 22.910373529968957 96-97 21.709075902409268 27.455714997017015 27.998331322247694 22.836877778326027 98-99 21.87064339337062 27.597354819661096 28.322816084146535 22.20918570282175 100-101 20.65041485724182 31.288318716605374 26.10965843652233 21.951607989630475 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1609.0 1 1416.0 2 1833.5 3 2585.0 4 3475.0 5 5361.0 6 6965.5 7 8533.0 8 9804.5 9 9997.5 10 9356.5 11 8646.5 12 9581.0 13 12759.5 14 20290.0 15 30778.5 16 39237.5 17 43572.0 18 43917.5 19 41657.5 20 38320.0 21 34909.0 22 33087.5 23 35069.0 24 40637.5 25 49789.5 26 62111.0 27 75759.5 28 91010.0 29 107909.0 30 125523.5 31 143199.0 32 159913.5 33 175927.5 34 191929.0 35 206835.0 36 223123.5 37 239179.5 38 252385.5 39 264286.0 40 275725.5 41 286177.0 42 292967.0 43 297854.0 44 302900.5 45 306585.5 46 309378.0 47 311784.5 48 313748.5 49 310948.0 50 304430.0 51 295798.0 52 282497.5 53 267625.0 54 252351.0 55 235104.0 56 216255.5 57 194852.5 58 171085.5 59 146945.5 60 122225.0 61 99010.0 62 78184.5 63 59747.0 64 44271.5 65 33506.0 66 26053.0 67 19621.5 68 14569.5 69 10646.0 70 7408.0 71 5058.0 72 3394.5 73 2189.0 74 1436.0 75 936.5 76 595.5 77 369.5 78 237.5 79 154.5 80 100.5 81 72.0 82 58.5 83 43.0 84 32.0 85 24.0 86 17.5 87 16.0 88 13.5 89 10.0 90 6.5 91 4.5 92 3.5 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.6344897118566392E-5 2 0.016281146419274032 3 2.6344897118566392E-5 4 1.8441427982996477E-4 5 2.6344897118566392E-5 6 1.3172448559283196E-5 7 1.3172448559283196E-5 8 0.0 9 0.0 10-11 1.3831070987247357E-4 12-13 5.861739608881022E-4 14-15 2.9638009258387194E-4 16-17 0.0016992458641475327 18-19 0.0 20-21 0.0 22-23 2.305426757217682E-4 24-25 0.009216969976790891 26-27 0.020068015083502384 28-29 0.3542496540942809 30-31 0.3301094860158406 32-33 0.3242182249602855 34-35 0.18959063932540282 36-37 0.04730751235434919 38-39 0.03856872189874682 40-41 0.016785460479898602 42-43 0.015756139150901998 44-45 0.019248846726223526 46-47 0.013145098647206586 48-49 0.008038149405048194 50-51 0.004649351909796683 52-53 0.0019614190288125403 54-55 2.897179659198397E-4 56-57 5.095841453651057E-4 58-59 0.001779346312116909 60-61 0.0017215394318606868 62-63 5.455006781075863E-4 64-65 2.753405709259196E-4 66-67 0.0032804444650773984 68-69 0.005284554771079601 70-71 0.006672109572195853 72-73 0.010558709941807676 74-75 0.007629851829652217 76-77 0.005620382967336774 78-79 0.003427174952363049 80-81 0.004416179491230842 82-83 0.001519309018258496 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.002812490498342911 92-93 0.015094444660174823 94-95 0.001401334122634778 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 129.0 20-21 489.0 22-23 998.0 24-25 2618.0 26-27 3175.0 28-29 5484.0 30-31 15269.0 32-33 19947.0 34-35 28941.0 36-37 39176.0 38-39 34424.0 40-41 49499.0 42-43 57516.0 44-45 67418.0 46-47 66385.0 48-49 56231.0 50-51 54459.0 52-53 10815.0 54-55 11099.0 56-57 11429.0 58-59 12061.0 60-61 62207.0 62-63 64414.0 64-65 70315.0 66-67 73537.0 68-69 71470.0 70-71 69834.0 72-73 68226.0 74-75 70185.0 76-77 70589.0 78-79 75083.0 80-81 76474.0 82-83 75946.0 84-85 78324.0 86-87 83845.0 88-89 89741.0 90-91 98269.0 92-93 106378.0 94-95 126396.0 96-97 195153.0 98-99 785030.0 100-101 4632625.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.30928183356518 #Duplication Level Percentage of deduplicated Percentage of total 1 89.56278032638974 76.40536468661669 2 7.345856784516679 12.533395334786803 3 1.7687218679679146 4.526651769589941 4 0.6349274377846781 2.166608149353461 5 0.28031564309536267 1.195676309958968 6 0.1432917512974598 0.7334469837516078 7 0.0827072750525456 0.4938988766000665 8 0.04685678511560915 0.3197854949793843 9 0.03000838065986113 0.23039940627728994 >10 0.10328709292202606 1.2938315956475905 >50 9.217387367760672E-4 0.049733970772538 >100 3.249164612525232E-4 0.05120742166558824 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.3172448559283198E-5 0.0 0.0 0.0 3 0.0 1.3172448559283198E-5 0.0 0.0 0.0 4 0.0 2.6344897118566396E-5 0.0 3.951734567784959E-5 0.0 5 0.0 2.6344897118566396E-5 0.0 5.268979423713279E-5 0.0 6 0.0 2.6344897118566396E-5 0.0 5.268979423713279E-5 0.0 7 0.0 2.6344897118566396E-5 0.0 5.268979423713279E-5 0.0 8 0.0 2.6344897118566396E-5 0.0 6.586224279641599E-5 1.3172448559283198E-5 9 0.0 2.6344897118566396E-5 0.0 6.586224279641599E-5 1.3172448559283198E-5 10-11 0.0 2.6344897118566396E-5 0.0 7.903469135569919E-5 1.3172448559283198E-5 12-13 0.0 3.951734567784959E-5 0.0 7.903469135569919E-5 1.3172448559283198E-5 14-15 6.586224279641599E-6 9.220713991498238E-5 0.0 9.220713991498238E-5 1.3172448559283198E-5 16-17 2.6344897118566396E-5 1.0537958847426558E-4 0.0 1.1855203703354878E-4 1.3172448559283198E-5 18-19 3.951734567784959E-5 1.2513826131319039E-4 0.0 1.7782805555032318E-4 1.3172448559283198E-5 20-21 3.951734567784959E-5 1.4489693415211516E-4 0.0 2.5686274690602234E-4 1.3172448559283198E-5 22-23 3.951734567784959E-5 1.7124183127068156E-4 0.0 5.005530452527615E-4 1.9758672838924797E-5 24-25 3.951734567784959E-5 1.9758672838924798E-4 0.0 0.0012843137345301117 2.6344897118566396E-5 26-27 3.951734567784959E-5 2.1075917694853116E-4 0.0 0.0035829060081250296 2.6344897118566396E-5 28-29 3.951734567784959E-5 2.2393162550781435E-4 0.0 0.01977843151176372 2.6344897118566396E-5 30-31 3.951734567784959E-5 2.5027652262638077E-4 0.0 0.029051835297499093 2.6344897118566396E-5 32-33 3.951734567784959E-5 2.5027652262638077E-4 0.0 0.03365560606896857 2.6344897118566396E-5 34-35 5.268979423713279E-5 3.2931121398207993E-4 0.0 0.03931975894946034 2.6344897118566396E-5 36-37 6.586224279641599E-5 4.149321296174207E-4 0.0 0.04943619944298984 2.6344897118566396E-5 38-39 6.586224279641599E-5 4.544494752952703E-4 0.0 0.07068335896911364 2.6344897118566396E-5 40-41 6.586224279641599E-5 5.334841666509696E-4 0.0 0.26722287769789854 2.6344897118566396E-5 42-43 6.586224279641599E-5 5.532428394898943E-4 0.0 0.2877192076561432 2.6344897118566396E-5 44-45 7.24484670760576E-5 6.322775308455935E-4 0.0 0.3242529937353152 2.6344897118566396E-5 46-47 7.903469135569919E-5 7.178984464809343E-4 0.0 0.3842798418199687 2.6344897118566396E-5 48-49 7.903469135569919E-5 7.310708950402174E-4 0.0 0.4296128235367418 3.2931121398207994E-5 50-51 7.903469135569919E-5 8.298642592348414E-4 0.0 0.5220899986471895 3.951734567784959E-5 52-53 7.903469135569919E-5 8.298642592348414E-4 0.0 0.693463554403464 3.951734567784959E-5 54-55 7.903469135569919E-5 8.298642592348414E-4 0.0 1.3062063440356404 3.951734567784959E-5 56-57 7.903469135569919E-5 8.430367077941247E-4 0.0 1.9726466202197348 4.610356995749119E-5 58-59 7.903469135569919E-5 8.496229320737662E-4 0.0 2.6540046943972175 6.586224279641599E-5 60-61 9.220713991498238E-5 8.562091563534078E-4 0.0 3.168764225421166 6.586224279641599E-5 62-63 9.220713991498238E-5 8.69381604912691E-4 0.0 3.1794536674270244 6.586224279641599E-5 64-65 9.220713991498238E-5 0.001001106090505523 0.0 3.1867248590317487 6.586224279641599E-5 66-67 1.0537958847426558E-4 0.001001106090505523 0.0 3.1926590471077056 6.586224279641599E-5 68-69 1.0537958847426558E-4 0.0010076923147851647 0.0 3.1982309928482824 6.586224279641599E-5 70-71 1.0537958847426558E-4 0.0010406234361833725 0.0 3.203743662570343 6.586224279641599E-5 72-73 1.0537958847426558E-4 0.0010735545575815807 0.0 3.2085911236401587 6.586224279641599E-5 74-75 1.0537958847426558E-4 0.0011064856789797886 0.0 3.2123847888252324 6.586224279641599E-5 76-77 1.0537958847426558E-4 0.0011789341460558462 0.0 3.215941349936239 6.586224279641599E-5 78-79 1.0537958847426558E-4 0.001198692818894771 0.0 3.219155427384704 6.586224279641599E-5 80-81 1.0537958847426558E-4 0.0012184514917336958 0.0 3.2206505002961823 6.586224279641599E-5 82-83 1.0537958847426558E-4 0.0012250377160133374 0.0 3.221177398238554 6.586224279641599E-5 84-85 1.0537958847426558E-4 0.0012382101645726205 0.0 3.221519881901095 6.586224279641599E-5 86-87 1.0537958847426558E-4 0.0012513826131319039 0.0 3.2216055028167307 6.586224279641599E-5 88-89 1.0537958847426558E-4 0.0013304173044876029 0.0 3.2216252614895695 6.586224279641599E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9040 0.0 48.91552 1 GTATCAA 16780 0.0 37.587776 1 TCAACGC 20285 0.0 30.450632 4 ATCAACG 20455 0.0 30.134296 3 CAACGCA 20895 0.0 29.561668 5 TATCAAC 21185 0.0 29.324137 2 AACGCAG 21465 0.0 28.897995 6 TATCTCG 9160 0.0 27.93406 94-95 ACGCAGA 24870 0.0 24.941515 7 CGCAGAG 25400 0.0 24.438065 8 CTATCTC 14595 0.0 21.103506 94-95 GCAGAGT 29390 0.0 20.97357 9 GTACATG 21065 0.0 20.479992 1 TACATGG 21470 0.0 19.711887 2 GAGTACT 17155 0.0 19.311752 12-13 ACATGGG 21450 0.0 19.003466 3 AGAGTAC 26585 0.0 18.992853 10-11 CGCTATC 14455 0.0 18.458733 92-93 CAGAGTA 28930 0.0 18.079597 10-11 GTGGTAT 5325 0.0 17.90457 1 >>END_MODULE